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gnu: r-biocparallel: Build reproducibly. 

* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase
"make-reproducible".
master
Ricardo Wurmus 2021-03-15 23:31:58 +01:00
parent d99a18252c
commit 8f9fd9b70c
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1 changed files with 28 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -1705,6 +1705,34 @@ powerful online queries from gene annotation to database mining.")
(properties (properties
`((upstream-name . "BiocParallel"))) `((upstream-name . "BiocParallel")))
(build-system r-build-system) (build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'make-reproducible
(lambda _
;; Remove generated documentation.
(for-each delete-file
'("inst/doc/BiocParallel_BatchtoolsParam.pdf"
"inst/doc/Introduction_To_BiocParallel.pdf"
"inst/doc/Errors_Logs_And_Debugging.pdf"
"inst/doc/BiocParallel_BatchtoolsParam.R"
"inst/doc/Introduction_To_BiocParallel.R"
"inst/doc/Errors_Logs_And_Debugging.R"))
;; Remove time-dependent macro
(substitute* '("inst/doc/BiocParallel_BatchtoolsParam.Rnw"
"inst/doc/Introduction_To_BiocParallel.Rnw"
"inst/doc/Errors_Logs_And_Debugging.Rnw"
"vignettes/BiocParallel_BatchtoolsParam.Rnw"
"vignettes/Introduction_To_BiocParallel.Rnw"
"vignettes/Errors_Logs_And_Debugging.Rnw")
(("\\today") "later"))
;; Initialize the random number generator seed when building.
(substitute* "R/internal_rng_stream.R"
(("\"L'Ecuyer-CMRG\"\\)" m)
(string-append
m "; if (!is.na(Sys.getenv(\"SOURCE_DATE_EPOCH\"))) {set.seed(100)}\n"))))))))
(propagated-inputs (propagated-inputs
`(("r-futile-logger" ,r-futile-logger) `(("r-futile-logger" ,r-futile-logger)
("r-snow" ,r-snow) ("r-snow" ,r-snow)