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gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
zimoun 2020-09-14 18:07:42 +02:00 • committed by Ricardo Wurmus
parent 6b1946b334
commit 916a3e59ab
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GPG key ID: 197A5888235FACAC
2 changed files with 29 additions and 29 deletions
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29
gnu/packages/bioconductor.scm
View file

@ -8347,6 +8347,35 @@ routines.")
objects from the @code{graph} package.") objects from the @code{graph} package.")
(license license:epl1.0))) (license license:epl1.0)))
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")
(version "1.10.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "SingleCellExperiment" version))
(sha256
(base32
"092wvk11n7pa234vlwhxm3gdi4k3sbnz1splhxalbdhz3jf02zfp"))))
(properties
`((upstream-name . "SingleCellExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/SingleCellExperiment")
(synopsis "S4 classes for single cell data")
(description "This package defines an S4 class for storing data from
single-cell experiments. This includes specialized methods to store and
retrieve spike-in information, dimensionality reduction coordinates and size
factors for each cell, along with the usual metadata for genes and
libraries.")
(license license:gpl3)))
(define-public r-scater (define-public r-scater
(package (package
(name "r-scater") (name "r-scater")

29
gnu/packages/bioinformatics.scm
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@ -10791,35 +10791,6 @@ variety of commonly used matrix types, including sparse and HDF5-backed
matrices.") matrices.")
(license license:gpl3))) (license license:gpl3)))
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")
(version "1.10.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "SingleCellExperiment" version))
(sha256
(base32
"092wvk11n7pa234vlwhxm3gdi4k3sbnz1splhxalbdhz3jf02zfp"))))
(properties
`((upstream-name . "SingleCellExperiment")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/SingleCellExperiment")
(synopsis "S4 classes for single cell data")
(description "This package defines an S4 class for storing data from
single-cell experiments. This includes specialized methods to store and
retrieve spike-in information, dimensionality reduction coordinates and size
factors for each cell, along with the usual metadata for genes and
libraries.")
(license license:gpl3)))
(define-public r-dropbead (define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2")) (revision "2"))