gnu: Add r-motifmatchr.
* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
This commit is contained in:
		
							parent
							
								
									2def2e203f
								
							
						
					
					
						commit
						9a38f39ec0
					
				
					 1 changed files with 34 additions and 0 deletions
				
			
		| 
						 | 
					@ -8972,6 +8972,40 @@ scan putative TFBS from sequence/alignment, query JASPAR database and
 | 
				
			||||||
provides a wrapper of de novo motif discovery software.")
 | 
					provides a wrapper of de novo motif discovery software.")
 | 
				
			||||||
    (license license:gpl2)))
 | 
					    (license license:gpl2)))
 | 
				
			||||||
 | 
					
 | 
				
			||||||
 | 
					(define-public r-motifmatchr
 | 
				
			||||||
 | 
					  (package
 | 
				
			||||||
 | 
					    (name "r-motifmatchr")
 | 
				
			||||||
 | 
					    (version "1.12.0")
 | 
				
			||||||
 | 
					    (source
 | 
				
			||||||
 | 
					     (origin
 | 
				
			||||||
 | 
					       (method url-fetch)
 | 
				
			||||||
 | 
					       (uri (bioconductor-uri "motifmatchr" version))
 | 
				
			||||||
 | 
					       (sha256
 | 
				
			||||||
 | 
					        (base32
 | 
				
			||||||
 | 
					         "0zrpn0hqdg0hm80ydkfpiqncwyb8y0xp6mlin7g955p8zcpcm67z"))))
 | 
				
			||||||
 | 
					    (properties `((upstream-name . "motifmatchr")))
 | 
				
			||||||
 | 
					    (build-system r-build-system)
 | 
				
			||||||
 | 
					    (propagated-inputs
 | 
				
			||||||
 | 
					     `(("r-biostrings" ,r-biostrings)
 | 
				
			||||||
 | 
					       ("r-bsgenome" ,r-bsgenome)
 | 
				
			||||||
 | 
					       ("r-genomeinfodb" ,r-genomeinfodb)
 | 
				
			||||||
 | 
					       ("r-genomicranges" ,r-genomicranges)
 | 
				
			||||||
 | 
					       ("r-iranges" ,r-iranges)
 | 
				
			||||||
 | 
					       ("r-matrix" ,r-matrix)
 | 
				
			||||||
 | 
					       ("r-rcpp" ,r-rcpp)
 | 
				
			||||||
 | 
					       ("r-rcpparmadillo" ,r-rcpparmadillo)
 | 
				
			||||||
 | 
					       ("r-rsamtools" ,r-rsamtools)
 | 
				
			||||||
 | 
					       ("r-s4vectors" ,r-s4vectors)
 | 
				
			||||||
 | 
					       ("r-summarizedexperiment" ,r-summarizedexperiment)
 | 
				
			||||||
 | 
					       ("r-tfbstools" ,r-tfbstools)))
 | 
				
			||||||
 | 
					    (native-inputs `(("r-knitr" ,r-knitr)))
 | 
				
			||||||
 | 
					    (home-page "https://bioconductor.org/packages/motifmatchr")
 | 
				
			||||||
 | 
					    (synopsis "Fast motif matching in R")
 | 
				
			||||||
 | 
					    (description
 | 
				
			||||||
 | 
					     "Quickly find motif matches for many motifs and many sequences.
 | 
				
			||||||
 | 
					This package wraps C++ code from the MOODS motif calling library.")
 | 
				
			||||||
 | 
					    (license license:gpl3)))
 | 
				
			||||||
 | 
					
 | 
				
			||||||
(define-public r-singlecellexperiment
 | 
					(define-public r-singlecellexperiment
 | 
				
			||||||
  (package
 | 
					  (package
 | 
				
			||||||
    (name "r-singlecellexperiment")
 | 
					    (name "r-singlecellexperiment")
 | 
				
			||||||
| 
						 | 
					
 | 
				
			||||||
		Reference in a new issue