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gnu: Add r-spatialexperiment.

* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
Ricardo Wurmus 2023-07-19 15:00:19 +02:00
parent c5f9e435da
commit 9d45783d77
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@ -19426,6 +19426,38 @@ operations on sparse matrices. Currently, the optimizations are limited to
data in the column sparse format.")
(license license:expat)))
(define-public r-spatialexperiment
(package
(name "r-spatialexperiment")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "SpatialExperiment" version))
(sha256
(base32
"18fcfyjvp9nzadlicsnz62wva8ik0z6jqg1b906avm2vk6rbxw70"))))
(properties `((upstream-name . "SpatialExperiment")))
(build-system r-build-system)
(propagated-inputs (list r-biocfilecache
r-biocgenerics
r-dropletutils
r-magick
r-rjson
r-s4vectors
r-singlecellexperiment
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/drighelli/SpatialExperiment")
(synopsis "S4 class for spatially resolved -omics data")
(description
"This package defines an S4 class for storing data from spatial -omics
experiments. The class extends SingleCellExperiment to support storage and
retrieval of additional information from spot-based and molecule-based
platforms, including spatial coordinates, images, and image metadata. A
specialized constructor function is included for data from the 10x Genomics
Visium platform.")
(license license:gpl3)))
(define-public r-delayedmatrixstats
(package
(name "r-delayedmatrixstats")