gnu: Add r-spatialexperiment.
* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
parent
c5f9e435da
commit
9d45783d77
|
@ -19426,6 +19426,38 @@ operations on sparse matrices. Currently, the optimizations are limited to
|
|||
data in the column sparse format.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public r-spatialexperiment
|
||||
(package
|
||||
(name "r-spatialexperiment")
|
||||
(version "1.10.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "SpatialExperiment" version))
|
||||
(sha256
|
||||
(base32
|
||||
"18fcfyjvp9nzadlicsnz62wva8ik0z6jqg1b906avm2vk6rbxw70"))))
|
||||
(properties `((upstream-name . "SpatialExperiment")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs (list r-biocfilecache
|
||||
r-biocgenerics
|
||||
r-dropletutils
|
||||
r-magick
|
||||
r-rjson
|
||||
r-s4vectors
|
||||
r-singlecellexperiment
|
||||
r-summarizedexperiment))
|
||||
(native-inputs (list r-knitr))
|
||||
(home-page "https://github.com/drighelli/SpatialExperiment")
|
||||
(synopsis "S4 class for spatially resolved -omics data")
|
||||
(description
|
||||
"This package defines an S4 class for storing data from spatial -omics
|
||||
experiments. The class extends SingleCellExperiment to support storage and
|
||||
retrieval of additional information from spot-based and molecule-based
|
||||
platforms, including spatial coordinates, images, and image metadata. A
|
||||
specialized constructor function is included for data from the 10x Genomics
|
||||
Visium platform.")
|
||||
(license license:gpl3)))
|
||||
|
||||
(define-public r-delayedmatrixstats
|
||||
(package
|
||||
(name "r-delayedmatrixstats")
|
||||
|
|
Reference in New Issue