gnu: Add r-spatialexperiment.
* gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
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@ -19426,6 +19426,38 @@ operations on sparse matrices. Currently, the optimizations are limited to
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data in the column sparse format.")
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data in the column sparse format.")
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(license license:expat)))
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(license license:expat)))
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(define-public r-spatialexperiment
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(package
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(name "r-spatialexperiment")
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(version "1.10.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "SpatialExperiment" version))
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(sha256
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(base32
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"18fcfyjvp9nzadlicsnz62wva8ik0z6jqg1b906avm2vk6rbxw70"))))
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(properties `((upstream-name . "SpatialExperiment")))
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(build-system r-build-system)
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(propagated-inputs (list r-biocfilecache
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r-biocgenerics
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r-dropletutils
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r-magick
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r-rjson
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r-s4vectors
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r-singlecellexperiment
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r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/drighelli/SpatialExperiment")
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(synopsis "S4 class for spatially resolved -omics data")
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(description
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"This package defines an S4 class for storing data from spatial -omics
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experiments. The class extends SingleCellExperiment to support storage and
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retrieval of additional information from spot-based and molecule-based
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platforms, including spatial coordinates, images, and image metadata. A
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specialized constructor function is included for data from the 10x Genomics
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Visium platform.")
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(license license:gpl3)))
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(define-public r-delayedmatrixstats
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(define-public r-delayedmatrixstats
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(package
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(package
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(name "r-delayedmatrixstats")
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(name "r-delayedmatrixstats")
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