gnu: Add r-chromomap.
* gnu/packages/cran.scm (r-chromomap): New variable.
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@ -306,6 +306,42 @@ are included as well.")
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;; Any version of the GPL.
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;; Any version of the GPL.
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(license license:gpl3+)))
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(license license:gpl3+)))
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;; The package sources include multiple non-minified JavaScript files and the
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;; v5.1.0 variant of d3.js. The d3.js file is not minified.
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(define-public r-chromomap
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(package
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(name "r-chromomap")
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(version "4.1.1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "chromoMap" version))
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(sha256
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(base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"))))
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(properties `((upstream-name . "chromoMap")))
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(build-system r-build-system)
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(propagated-inputs (list r-htmltools r-htmlwidgets))
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(native-inputs (list r-knitr))
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(home-page "https://cran.r-project.org/package=chromoMap")
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(synopsis "Interactive genomic visualization of biological data")
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(description
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"This package provides interactive, configurable and graphics
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visualization of the chromosome regions of any living organism allowing users
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to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It
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introduces a special plot viz. the \"chromosome heatmap\" that, in addition to
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mapping elements, can visualize the data associated with chromosome
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elements (like gene expression) in the form of heat colors. Users can
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investigate the detailed information about the mappings (like gene names or
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total genes mapped on a location) or can view the magnified single or double
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stranded view of the chromosome at a location showing each mapped element in
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sequential order. The package provide multiple features like visualizing
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multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and
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labelling. The plots can be saved as HTML documents that can be customized
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and shared easily. In addition, you can include them in R Markdown or in R
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Shiny applications.")
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(license (list license:gpl3
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license:isc)))) ;for bundled d3js
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(define-public r-collections
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(define-public r-collections
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(package
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(package
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(name "r-collections")
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(name "r-collections")
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