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129891 Commits (0118fe6f85cd4ecef26c82847cb2723efb5de985)

Author SHA1 Message Date
Troy Figiel 0118fe6f85
gnu: python-plotnine: Reformat with guix style. 
* gnu/packages/python-science.scm (python-plotnine): Reformat with guix style.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-18 21:04:21 +00:00
Troy Figiel 662ae5eac2
gnu: python-plotnine: Fix build. 
* gnu/packages/python-science.scm (python-plotnine): Fix build.
[arguments]<#:test-flags>: Add test_custom_shape to ignored tests.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-01-18 20:56:59 +00:00
Herman Rimm 3e3975275b
gnu: u-boot: Update to 2024.01. 
* gnu/packages/bootloaders.scm (u-boot): Update to 2024.01.
[source]: Remove patman patch, add build-without-libcrypto patch.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: Remove
upstreamed diffs.
* gnu/packages/patches/u-boot-build-without-libcrypto.patch: Add file.
* gnu/packages/patches/u-boot-patman-change-id.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Add patch, remove patch.

Change-Id: I5a21d4cd645449ff669f17cdabe5313870bec46f
Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
 2024-01-18 10:18:00 -08:00
Dariqq a7a0b5dc59
gnu: linux-libre 4.14: Update to 4.14.336. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.336.
(linux-libre-4.14-pristine-source): Update hash.

Change-Id: I6d3a8958d745bc729194e4ff64774d9a7df5aa50
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:36 -05:00
Wilko Meyer c8d15a5670
gnu: linux-libre 4.19: Update to 4.19.305. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.305.
(linux-libre-4.19-pristine-source): Update hashes.

Change-Id: I6b99e5b626077cbd6fd36f45cacfb12ce8e3decc
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer 33cdd7d362
gnu: linux-libre 5.4: Update to 5.4.267. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.267.
(linux-libre-5.4-pristine-source): Update hashes.

Change-Id: Ic185da10b89a3b677be471545c4cd4fb506e66c4
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer afd2c566d8
gnu: linux-libre 5.10: Update to 5.10.208. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.208.
(linux-libre-5.10-pristine-source): Update hashes.

Change-Id: I0b627be7dc308e7217c541451642266395ee4f95
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer fe3e9a02be
gnu: linux-libre 5.15: Update to 5.15.147. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.147.
(linux-libre-5.15-pristine-source): Update hashes.

Change-Id: I88c1a8ac970334bf29bceeef20aab193ab3ef4f6
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:35 -05:00
Wilko Meyer 1a2a4d242e
gnu: linux-libre 6.1: Update to 6.1.73. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.73.
(linux-libre-6.1-pristine-source): Update hashes.

Change-Id: I9f0ec4b0ec25b41acc40c8b7c529bf9bcd838a06
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:34 -05:00
Wilko Meyer 95fc3f4488
gnu: linux-libre 6.6: Update to 6.6.12. 
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.12.
(linux-libre-6.6-pristine-source): Update hashes.

Change-Id: I47248352ba921ec9eba237d92b7f0e33ffb994d9
Signed-off-by: Leo Famulari <leo@famulari.name>
 2024-01-18 10:13:23 -05:00
Ricardo Wurmus f1aaaf2ac1
gnu: r-tximeta: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.2.

Change-Id: I166ca1f24ecef8067f36a35a140dff345fdab7a0
 2024-01-18 16:01:55 +01:00
Ricardo Wurmus b19e208c17
gnu: r-basilisk: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.2.

Change-Id: I9524ac5f52107c38b3c1172f3083836c7eabac99
 2024-01-18 16:01:55 +01:00
Ricardo Wurmus cde5a13151
gnu: r-scran: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.30.1.

Change-Id: I4a2784c87fdaa09a370c4d46101dbb569bcc39ab
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus eee867139c
gnu: r-xcms: Update to 4.0.2. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.2.

Change-Id: I1fe358bb287acb2810b83c383b0cd1b28e8c97b5
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus a162ff0fa4
gnu: r-genomicalignments: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.38.2.

Change-Id: Ia521daa60db1fab67d77be2fddf356e6e4950efd
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus 5ad5cb8c6e
gnu: r-edger: Update to 4.0.9. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.9.

Change-Id: I253e9e2a5675b13e7947601a8726bea8aad63792
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus c64c5a33b2
gnu: r-dss: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.50.1.

Change-Id: Ief667e0b83ae2220900d021ebe93d27c4747c91d
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus e3efa67a2e
gnu: r-densvis: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.12.1.

Change-Id: I52383b9b530fdf0fe262752d639c9f2834e70fd0
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus 85cc64bfb8
gnu: r-animalcules: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.18.2.
[propagated-inputs]: Remove r-biomformat, r-glmnet, and r-plotroc; add r-rocit.

Change-Id: Idd769a9608154b66871a38701a49e84f008f849c
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus d7baeddebe
import/cran: Add transformation for "packaging". 
* guix/import/cran.scm (transform-sysname): Add case for "python-packaging".

Change-Id: I0d125fb3858c009a8527d60f56754b9b9c90b409
 2024-01-18 16:01:54 +01:00
Ricardo Wurmus f6f48b13e5
gnu: Add r-rocit. 
* gnu/packages/cran.scm (r-rocit): New variable.

Change-Id: I255db21624dd3684d38748ce42ce71e8fa9fb73b
 2024-01-18 16:01:54 +01:00
宋文武 48b5e88518
gnu: libime: Update to 1.1.5. 
* gnu/packages/fcitx5.scm (libime): Update to 1.1.5.

Change-Id: I5dc2b083df7b3b3f4ed93bcbf2e86190d647a497
 2024-01-18 19:26:45 +08:00
宋文武 21eeda2f57
gnu: fcitx5: Update to 5.1.7. 
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.1.7.

Change-Id: Ifd87b6bb21afd2980d95a09177f28048d9a7e182
 2024-01-18 19:26:45 +08:00
宋文武 6a048713ec
gnu: fcitx5-rime: Update to 5.1.4. 
* gnu/packages/fcitx5.scm (fcitx5-rime): Update to 5.1.4.

Change-Id: If418aff57363ffc2f2469eedbf90606d7ff3aac8
 2024-01-18 18:14:57 +08:00
宋文武 cdc320ef53
gnu: fcitx5-configtool: Update to 5.1.3. 
* gnu/packages/fcitx5.scm (fcitx5-configtool): Update to 5.1.3.

Change-Id: I9b75478fb4b3fe1d690de9f33a0dce02781a05a3
 2024-01-18 18:14:57 +08:00
宋文武 314bc2d046
gnu: fcitx5-chinese-addons: Update to 5.1.3. 
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): Update to 5.1.3.

Change-Id: I90c8231e967add94c59c4c912025100b9f4bca57
 2024-01-18 18:14:57 +08:00
宋文武 35382441e4
gnu: fcitx5-anthy: Update to 5.1.3. 
* gnu/packages/fcitx5.scm (fcitx5-anthy): Update to 5.1.3.

Change-Id: Ifb45a5e36aeb03f54df449c60ab58ee8f393d534
 2024-01-18 18:14:57 +08:00
宋文武 6c1804b6da
gnu: fcitx5-qt: Update to 5.1.4. 
* gnu/packages/fcitx5.scm (fcitx5-qt): Update to 5.1.4.

Change-Id: Ie2b8a3bb061d4a068602a841dae4b50a37715668
 2024-01-18 18:14:57 +08:00
宋文武 c9d2cf0fa5
gnu: fcitx5-gtk: Update to 5.1.1. 
* gnu/packages/fcitx5.scm (fcitx5-gtk): Update to 5.1.1.

Change-Id: If4d6fcddc1a284aa02519b93fdd89664ec1915d5
 2024-01-18 18:14:57 +08:00
宋文武 3cb77a3ed1
gnu: libime: Update to 1.1.4. 
* gnu/packages/fcitx5.scm (libime): Update to 1.1.4.

Change-Id: Ibf60683739337e886316ea88d97e899053469ed7
 2024-01-18 18:14:57 +08:00
宋文武 b38955ec6e
gnu: fcitx5-lua: Update to 5.0.12. 
* gnu/packages/fcitx5.scm (fcitx5-lua): Update to 5.0.12.

Change-Id: Ie4b4c3496a59a0a956359a73a780de8a6c2211f7
 2024-01-18 18:14:57 +08:00
宋文武 fbcdbb82a8
gnu: fcitx5: Update to 5.1.6. 
* gnu/packages/fcitx5.scm (fcitx5): Update to 5.1.6.
[inputs]: Add libuv.

Change-Id: I77e722c8ae76272ce76bbb42e5a3a01d81dff433
 2024-01-18 18:14:57 +08:00
宋文武 c9ed353be1
gnu: xcb-imdkit: Update to 1.0.6. 
* gnu/packages/fcitx5.scm (xcb-imdkit): Update to 1.0.6.

Change-Id: If5398cee97d20fed4e1f643fabc8950f007d6786
 2024-01-18 18:14:57 +08:00
Nicolas Graves via Guix-patches via c49957de72
gnu: emacs-org-agenda-files-track: Update to 0.4.0. 
* gnu/packages/emacs-xyz.scm (emacs-org-agenda-files-track): Update to 0.4.0.

Change-Id: I69e0efd85d03dc5202d18a47d4e05b82e01b0994
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-18 10:52:42 +03:00
Nicolas Graves via Guix-patches via 2ebb7f57c2
gnu: emacs-org-dynamic-agenda-ql: Rename package to emacs-org-agenda-files-track-ql. 
* gnu/packages/emacs-xyz.scm (emacs-org-dynamic-agenda-ql): Define in terms of
'deprecated-package'.
(emacs-org-agenda-files-track-ql): New variable, formerly known as
"emacs-org-dynamic-agenda-ql".

Change-Id: Ib73181ecf6538de77c78f2d3b20f02e0df85beac
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-18 10:52:42 +03:00
Nicolas Graves via Guix-patches via aa592f7192
gnu: emacs-org-dynamic-agenda: Rename package to emacs-org-agenda-files-track. 
* gnu/packages/emacs-xyz.scm (emacs-org-dynamic-agenda): Define in terms of
'deprecated-package'.
(emacs-org-agenda-files-track): New variable, formerly known as
"emacs-org-dynamic-agenda".

Change-Id: If0e8e3fe5871b585880944fd73a5ae37c6fd3464
Signed-off-by: Andrew Tropin <andrew@trop.in>
 2024-01-18 10:52:41 +03:00
Ricardo Wurmus 6394736d79
Revert "gnu: r-randomforestsrc: Update to 3.2.3." 
This reverts commit 891c0845e2.

It was pushed by accident.  Any version of r-randomforestsrc later than 2.9.3
needs r-diagrammer, which contains too many minified JavaScript files.
 2024-01-18 08:12:47 +01:00
Ricardo Wurmus 4532eb6389
gnu: r-fastcluster: Update to 1.2.6. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.2.6.

Change-Id: I438a15e96022737c5f002d8a3b1accdf17458ce5
 2024-01-17 23:09:52 +01:00
Ricardo Wurmus fd32212bf0
gnu: r-withr: Update to 3.0.0. 
* gnu/packages/statistics.scm (r-withr): Update to 3.0.0.

Change-Id: Ib20faa2879849b566c17934ec1bea85ca7b41ca5
 2024-01-17 23:09:52 +01:00
Ricardo Wurmus 3a9ef6b8c2
gnu: r-roxygen2: Update to 7.3.0. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.0.

Change-Id: I28783dafddbf63c61fe8885b0a14030b697bc6a2
 2024-01-17 23:09:52 +01:00
Ricardo Wurmus b8d9b01625
gnu: r-dbi: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-dbi): Update to 1.2.1.

Change-Id: If362fb70ce921631f2cd8ac695662d7ea2c8b195
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus c6c76247f9
gnu: r-digest: Update to 0.6.34. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.34.

Change-Id: Ib01bc0c2081a916cf1a9d099d9e3782a816670f1
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus aa71ac746f
gnu: r-matrix: Update to 1.6-5. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-5.

Change-Id: I8b2ee394d194307fc107c9bfada81320f10df22f
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus bfcf9be720
gnu: r-mass: Update to 7.3-60.0.1. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-60.0.1.

Change-Id: I4addec35e70445932413ce1a3f033a278ef7eda4
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus 91e4f49fa8
gnu: r-paws: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws): Update to 0.5.0.

Change-Id: I9692850a4464872f61d1eb884f5b1f0bcb5e0876
 2024-01-17 23:09:51 +01:00
Ricardo Wurmus 5dcfb69df2
gnu: r-paws-cost-management: Update to 0.5.0. 
* gnu/packages/cran.scm (r-paws-cost-management): Update to 0.5.0.

Change-Id: I4e306920691e197a887767c2267556dcfd2e7f81
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus 891c0845e2
gnu: r-randomforestsrc: Update to 3.2.3. 
* gnu/packages/cran.scm (r-randomforestsrc): Update to 3.2.3.

Change-Id: I18ece3d34400315157d86841be39612cabb797f2
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus d7a5da6d02
gnu: r-spatstat-data: Update to 3.0-4. 
* gnu/packages/cran.scm (r-spatstat-data): Update to 3.0-4.

Change-Id: Ia119a9f9cc98b67dc1192377f3d8c994a98718f1
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus 7f7284d8cd
gnu: r-rintrojs: Update to 0.3.4. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.4.

Change-Id: I1332c6c5fe0817f796ed206ed85e3544b26c7b7e
 2024-01-17 23:09:50 +01:00
Ricardo Wurmus 92e835b1fe
gnu: r-rglpk: Update to 0.6-5.1. 
* gnu/packages/cran.scm (r-rglpk): Update to 0.6-5.1.

Change-Id: Idb952e1bbd5e57c779681661fa7a1c0c38a86bb2
 2024-01-17 23:09:49 +01:00