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106515 Commits (039bef4ac81ecc88f99434b8d414604281d4818d)

Author SHA1 Message Date
Tobias Geerinckx-Rice 039bef4ac8
gnu: ccache: Update to 4.7.4.
* gnu/packages/ccache.scm (ccache): Update to 4.7.4.
2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice aceb4e49d1
gnu: byacc: Update to 20221106.
* gnu/packages/c.scm (byacc): Update to 20221106.
2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice 2b7b0cac71
gnu: fio: Update to 3.33.
* gnu/packages/benchmark.scm (fio): Update to 3.33.
2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice 930b94809d
gnu: libltc: Update to 1.3.2.
* gnu/packages/audio.scm (libltc): Update to 1.3.2.
2022-12-11 01:00:00 +01:00
Tobias Geerinckx-Rice b0913931e9
gnu: realmd: Update to 0.17.1.
* gnu/packages/admin.scm (realmd): Update to 0.17.1.
2022-12-11 01:00:00 +01:00
Jelle Licht 688028931f
gnu: emacs-pdf-tools: Update home page.
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools)[home-page]: Update.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:31:28 +01:00
Konrad Hinsen a67461f0e1
gnu: emacs-hyperbole: Add missing files.
* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Add a new
INSTALL-DOC phase.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:24:09 +01:00
Nicolas Goaziou 7d570036f0
gnu: emacs-pg: Update to 0.20.
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.20.
2022-12-13 21:24:09 +01:00
Nicolas Goaziou c922d935c3
gnu: emacs-fountain-mode: Update to 3.6.1.
* gnu/packages/emacs-xyz.scm (emacs-fountain-mode): Update to 3.6.1.
2022-12-13 21:24:08 +01:00
Nicolas Goaziou 98f7332aa8
gnu: emacs-debbugs: Update to 0.35.
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.35.
2022-12-13 21:24:08 +01:00
Nicolas Goaziou 89795dec98
gnu: emacs-project: Update to 0.9.3.
* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.9.3.
2022-12-13 21:24:08 +01:00
dan e4ab2ccb18
gnu: emacs-beancount: Update to 0.0.0-1.687775d.
* gnu/packages/finance.scm (emacs-beancount): Update to 0.0.0-1.687775d.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-13 21:24:02 +01:00
Mark H Weaver d83eef22b2
gnu: icecat: Update to 102.6.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2022-46872, CVE-2022-46874, CVE-2022-46875,
CVE-2022-46878, CVE-2022-46880, CVE-2022-46881, and CVE-2022-46882.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2022-12-13 12:36:39 -05:00
Ricardo Wurmus 3d2b2f12e5
gnu: bedops: Update to 2.4.41.
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.41.
[arguments]: Remove trailing #T from build phases; do not set BINDIR in
make-flags; set CC; replace 'install phase.
[native-inputs]: Add diffutils, perl, and which.
2022-12-13 18:22:55 +01:00
Petr Hodina 22acc0b029
services: nix: Add more configuration fields.
* gnu/services/nix.scm (<nix-configuration>)[build-directory]: New field.
(nix-service-etc, nix-shepherd-service): Take them into account.
* doc/guix.texi (Nix): Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13 17:46:39 +01:00
Lars-Dominik Braun bbcd06e56c
ui: Take package upstream name into account when searching.
* guix/ui.scm (%package-metrics): Add PACKAGE-UPSTREAM-NAME*.
* tests/ui.scm ("package-relevance and upstream name"): New test.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13 17:46:39 +01:00
Lars-Dominik Braun 052faadde7
packages: Add 'package-upstream-name*'.
* guix/packages.scm (package-upstream-name*): New procedure.
* tests/packages.scm ("package-upstream-name*"): New test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-13 17:46:39 +01:00
Ludovic Courtès a2f0297af0
gnu: guile-gnutls: Add properties for the 'generic-git' updater.
* gnu/packages/tls.scm (guile-gnutls)[properties]: New field.
2022-12-13 17:46:39 +01:00
Ricardo Wurmus 23322c2de8
gnu: tophat: Remove trailing #T from build phases and snippet.
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus b339e181e1
gnu: python-bx-python: Update to 0.9.0.
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'build-extensions and 'disable-cython-doctests.
[native-inputs]: Replace python-nose with python-pytest.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus de30c74b63
gnu: bioawk: Use gexp.
* gnu/packages/bioinformatics.scm (bioawk)[arguments]: Use gexp and simplify
'install phase.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus 057579495f
gnu: blasr-libcpp: Remove trailing #T from build phases.
* gnu/packages/bioinformatics.scm (blasr-libcpp)[arguments]: Remove
trailing #T from build phases.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus eaf5198a5e
gnu: pbbam: Drop input labels.
* gnu/packages/bioinformatics.scm (pbbam)[native-inputs]: Drop labels.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus 8b2fdcb2c3
gnu: pbbam: Update to 2.1.0.
* gnu/packages/bioinformatics.scm (pbbam): Update to 2.1.0.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus 684d046e6c
gnu: pbcopper: Update to 2.0.0.
* gnu/packages/bioinformatics.scm (pbcopper): Update to 2.0.0.
2022-12-13 16:31:55 +01:00
Ricardo Wurmus 53f65f7315
gnu: bedtools: Remove unnecessary quasiquotation.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Remove quasiquote.
[native-inputs]: Drop input label.
2022-12-13 16:31:54 +01:00
Ricardo Wurmus 4f1a36bd7b
gnu: bamutils: Update to 1.0.15.
* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.15.
[arguments]: Remove quasiquoting; remove USER_WARNINGS from make-flags.
[native-inputs]: Update libstatgen.
2022-12-13 16:31:54 +01:00
Ricardo Wurmus 8cc22866c2
gnu: bamtools: Update to 2.5.2.
* gnu/packages/bioinformatics.scm (bamtools): Update to 2.5.2.
[arguments]: Enable tests; remove extra phases.
[inputs]: Add jsoncpp.
[native-inputs]: Add pkg-config.
2022-12-13 16:31:54 +01:00
Ricardo Wurmus 6d2afaf25b
gnu: aragorn: Update to 1.2.41.
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.41.
[source]: Fetch C source file from new location.
[arguments]: Drop trailing #T in build phases; use gexp.
[native-inputs]: Add origin for man page.
[home-page]: Update to new home page.
[license]: Update to GPLv3+.
2022-12-13 16:31:54 +01:00
Maxim Cournoyer 93b0c1e35e
gnu: Add rpi-imager.
* gnu/packages/raspberry-pi.scm (rpi-imager): New variable.
2022-12-13 10:11:20 -05:00
jgart 87638cdd48
gnu: mercury: Update to 22.01.4.
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete and non-existent file from being patched.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:12 +00:00
jgart 1810d67ad4
gnu: mercury-minimal: Update to 22.01.4.
* gnu/packages/mercury.scm (mercury-minimal): Update to 22.01.4.
[arguments]: Remove obsolete file path, update libatomic-ops, and update
libgc-8.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:12 +00:00
Sharlatan Hellseher 0682e7c2e3
gnu: python-h5netcdf: Update to 1.1.0.
* gnu/packages/python-xyz.scm (python-h5netcdf): Update to 1.1.0.
[build-system]: Use pyproject-build-system, to simplify package.
[description]: Style content and add links to referenced projects.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
Sharlatan Hellseher 1a0dcc2112
gnu: python-asdf-astropy: Update to 0.3.0.
* gnu/packages/astronomy.scm (python-asdf-astropy): Update to 0.3.0.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
EuAndreh 866eb7fffb
gnu: Add tmux-plugin-resurrect.
* gnu/packages/tmux.scm (tmux-plugin-resurrect): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
Paul A. Patience 36bd9121d6
gnu: Add rust-csv-index-0.1.
* gnu/packages/crates-io.scm (rust-csv-index-0.1): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
Martin Schmidt 34cf5e06a9
gnu: nheko: Support video calls.
* gnu/packages/messaging.scm (nheko)[inputs]: Replace GST-PLUGINS-GOOD with
GST-PLUGINS-GOOD-QT to fix video calls.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
Martin Schmidt 27efd3ed3c
gnu: Add gst-plugins-good-qt.
* gnu/packages/gstreamer.scm (gst-plugins-good-qt): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-12-13 13:42:11 +00:00
Christopher Baines 2fb187ed7c
gnu: guix-data-service: Update to 0.0.1-36.7b69611.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-36.7b69611.
2022-12-13 13:42:11 +00:00
Ricardo Wurmus 81841559f4
gnu: kaldi: Update to 0-1.be22248.
* gnu/packages/machine-learning.scm (kaldi): Update to 0-1.be22248.
2022-12-13 14:38:13 +01:00
Ricardo Wurmus f764947dab
gnu: kaldi: Remove trailing #T from build phases.
* gnu/packages/machine-learning.scm (kaldi)[arguments]: Remove trailing #T
from build phases.
2022-12-13 14:38:12 +01:00
Ricardo Wurmus c978ae3c6b
gnu: kaldi-gstreamer-server: Update to 0-3.f79e204.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): Update to
0-3.f79e204.
2022-12-13 14:38:12 +01:00
Ricardo Wurmus 8466aceb13
gnu: kaldi-gstreamer-server: Drop input labels.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Drop
package labels.
2022-12-13 14:38:12 +01:00
Ricardo Wurmus 79cf84c7ab
gnu: kaldi-gstreamer-server: Remove trailing #T from build phases.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]:
Remove trailing #T from build phases.
2022-12-13 14:38:12 +01:00
Ricardo Wurmus 01f4617b99
gnu: gst-kaldi-nnet2-online: Update to 0-3.7888ae5.
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to
0-3.7888ae5.
[arguments]: Do to quote list; remove trailing #T from build phases; augment
CPLUS_INCLUDE_PATH instead of replacing it.
[inputs]: Replace openfst with openfst-1.7.3.
2022-12-13 14:38:03 +01:00
Pierre Neidhardt 417604ec25
gnu: sbcl-alloy: Update to 20221126.
* gnu/packages/lisp-xyz.scm (sbcl-alloy): Update to 20221126.
2022-12-13 11:18:59 +01:00
Pierre Neidhardt 706dead679
gnu: sbcl-3b-bmfont: Update to 20220327.
* gnu/packages/lisp-xyz.scm (sbcl-3b-bmfont): Update to 20220327.
2022-12-13 11:18:59 +01:00
Pierre Neidhardt e7eefbf85c
gnu: Add cl-sdf.
* gnu/packages/lisp-xyz.scm (cl-sdf, ecl-sdf, sbcl-sdf): New variables.
2022-12-13 11:18:59 +01:00
Pierre Neidhardt f0ebbe1598
gnu: sbcl-cl-vectors: Build all subsystems.
* gnu/packages/lisp-xyz.scm (sbcl-cl-vectors)[arguments]: Build cl-paths,
cl-aa and cl-aa-misc as well.
2022-12-13 11:18:59 +01:00
Pierre Neidhardt 4f64d30b5d
gnu: Add cl-binpack.
* gnu/packages/lisp-xyz.scm (cl-binpack, ecl-binpack, sbcl-binpack): New variables.
2022-12-13 11:18:59 +01:00