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103526 Commits (041dbd604b4030da80c790601389c0fde9c41050)

Author SHA1 Message Date
Ricardo Wurmus 4d031b58f1
gnu: r-quantsmooth: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.66.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 45e8cd7612
gnu: r-oligo: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus eef6764047
gnu: r-oligoclasses: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.62.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus adfdd8e86e
gnu: r-geneplotter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.78.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus e82e8329f5
gnu: r-zellkonverter: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 61b9cc9b50
gnu: r-zlibbioc: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.46.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus d9a9bcf5c6
gnu: r-xvector: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.40.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ed59644ba0
gnu: r-xmapbridge: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 753beb909f
gnu: r-xina: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xina): Update to 1.18.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 681a784204
gnu: r-vsn: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.68.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 7a6fa454aa
gnu: r-variantannotation: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.46.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 998c7242c2
gnu: r-tximport: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.28.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ea8a5b5d01
gnu: r-topgo: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.52.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 221c9b3914
gnu: r-systempiper: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ec18aab140
gnu: r-sva: Update to 3.48.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.48.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 77e5cffb35
gnu: r-summarizedexperiment: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 028e3d5219
gnu: r-structuralvariantannotation: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.16.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 08ca51d2e0
gnu: r-stringdb: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus b54be030aa
gnu: r-stager: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.22.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 5698bf6fed
gnu: r-slingshot: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.8.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 15caa80904
gnu: r-scds: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scds): Update to 1.16.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 93c0b52f6a
gnu: r-trajectoryutils: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.8.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus a48cb51ed0
gnu: r-transcriptr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.28.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus b28d21fff2
gnu: r-simplifyenrichment: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 8db5bea2ba
gnu: r-shortread: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 7c53819208
gnu: r-shinymethyl: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.0.
[propagated-inputs]: Remove r-illuminahumanmethylation450kmanifest and r-matrixstats; add
r-biobase, r-htmltools, and r-matrixgenerics.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 6264a7cca0
gnu: r-seqpattern: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus bbdb686878
gnu: r-seqlogo: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.66.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 8e9d0d590f
gnu: r-scry: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scry): Update to 1.12.0.
[propagated-inputs]: Remove r-hdf5array.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3cd53df25a
gnu: r-scmap: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 70433802aa
gnu: r-scdblfinder: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 22f63061e3
gnu: r-scannotatr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.6.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 2521248770
gnu: r-rtracklayer: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 04a5521933
gnu: r-rsamtools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus c2f9c0af28
gnu: r-rhdf5filters: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.0.
[arguments]: Add phase 'use-system-libraries.
[inputs]: Add bzip2, c-blosc, and zstd:lib.
[native-inputs]: Add r-biocstyle and r-rmarkdown.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 4e9e8ed194
gnu: r-rhdf5: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.44.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus cc5dc923a6
gnu: r-regioner: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 07a18fe524
gnu: r-rcas: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus bc5d14d246
gnu: r-rbgl: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.76.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 70af2c3137
gnu: r-protgenerics: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 8e08912fcd
gnu: r-pcamethods: Update to 1.92.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.92.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus fdf3453dad
gnu: r-pcaexplorer: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus e408cd70e8
gnu: r-oscope: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.30.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 18d4032d2a
gnu: r-organismdbi: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.42.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3c31e017e2
gnu: r-organism-dplyr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.28.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 394c951ba2
gnu: r-mzr: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3e05ea0edb
gnu: r-mzid: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.38.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6d09227e1f
gnu: r-msnid: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.34.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6bbb3bedb1
gnu: r-msnbase: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 5c6355ca35
gnu: r-msa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-msa): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus ba6ed3ff40
gnu: r-mutationalpatterns: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.10.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 37e95f3c9c
gnu: r-muscat: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus da92987a4b
gnu: r-mmuphin: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.14.0.
[propagated-inputs]: Remove r-biocstyle.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 2ebeeeb438
gnu: r-methylkit: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 15efeebe53
gnu: r-metaneighbor: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.20.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 0ee6b4203d
gnu: r-metagenomeseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.42.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 380e27f153
gnu: r-maser: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-maser): Update to 1.18.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3c8d7bd3c6
gnu: r-manor: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.72.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 6e5c2c48df
gnu: r-makecdfenv: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.76.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 4d1208e654
gnu: r-made4: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 343036f151
gnu: r-maaslin2: Update to 1.13.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.13.0.
[propagated-inputs]: Remove r-mumin and r-rmarkdown.
[arguments]: Remove.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d1da543257
gnu: r-limma: Update to 3.56.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus b962e908a0
gnu: r-keggrest: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 2c32ed3955
gnu: r-interactivedisplaybase: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.38.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus ab9cdb4082
gnu: r-impute: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 8d8a7d55e2
gnu: r-rhtslib: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.2.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus c3882920fd
gnu: r-hpar: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.42.0.
[propagated-inputs]: Add r-experimenthub.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus fdc4c55da2
gnu: r-harshlight: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.72.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus f7a3988fc7
gnu: r-gseabase: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.62.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 57e4aab4ee
gnu: r-gostats: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.66.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 96613abcc5
gnu: r-globaltest: Update to 5.54.0. 
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.54.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 5cb6453b43
gnu: r-glad: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-glad): Update to 2.64.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus a6f4e6e7fb
gnu: r-genomicranges: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 7c75371b19
gnu: r-genomicfiles: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 25ffc3d9ef
gnu: r-genomicfeatures: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 8e72841e03
gnu: r-genomicalignments: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d87887a2ba
gnu: r-genomeinfodb: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus dac6f08730
gnu: r-genomation: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.32.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus ff563c9a60
gnu: r-geneoverlap: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus d7a10c3d52
gnu: r-genefilter: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.0.
[propagated-inputs]: Remove r-biocgenerics; add r-matrixgenerics.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 70c3d4ac37
gnu: r-gage: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.50.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 476042884c
gnu: r-fastseg: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.46.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 3ce5803cac
gnu: r-ensembldb: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus f9b6a2ad85
gnu: r-enmix: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.36.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus cbe7726d68
gnu: r-edger: Update to 3.42.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 2a1f12e3d1
gnu: r-edaseq: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.34.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 59cecee237
gnu: r-dittoseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.0.
 2023-04-29 20:27:56 +02:00
Ricardo Wurmus 70784f1dcf
gnu: r-dirichletmultinomial: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 876c2dcb74
gnu: r-diffcyt: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.20.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f327d05ecc
gnu: r-dexseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.46.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus dc78185fc7
gnu: r-deseq2: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.0.
[propagated-inputs]: Remove r-geneplotter.
[native-inputs]: Add r-rmarkdown.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 176c45cb21
gnu: r-complexheatmap: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.16.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f86ea9868a
gnu: r-chipseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.50.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 219901a7b2
gnu: r-chipseeker: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0.
[propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble,
and r-yulab-utils.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 6c700d8b3a
gnu: r-champ: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-champ): Update to 2.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 7b4443f365
gnu: r-category: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.66.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 5d526f71c8
gnu: r-bsgenome: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 9201a7728b
gnu: r-biovizbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.48.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus bbd90f85b9
gnu: r-biostrings: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus c9d5ec9e66
gnu: r-biocparallel: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus d0199e0c5c
gnu: r-biomart: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 766fb8a21c
gnu: r-biobase: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.60.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus b8c4b8b44f
gnu: r-bamsignals: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.32.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 968878ef27
gnu: r-aroma-light: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 83b381a95b
gnu: r-annotationhub: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f6c878674f
gnu: r-annotationforge: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus aa97ff9c34
gnu: r-annotationfilter: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 46ff186f73
gnu: r-annotationdbi: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus d9d1b77c84
gnu: r-annotate: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 4f2c3411ec
gnu: r-affxparser: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 1b4dd53a4f
gnu: r-affyio: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.70.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 5d8d8c2256
gnu: r-affycoretools: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus a7485d9850
gnu: r-affycontam: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.58.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus b121b78bda
gnu: r-affycomp: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 6a19dd1e21
gnu: r-affy: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 21b305edbe
gnu: r-italics: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-italics): Update to 2.60.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 669d0d17da
gnu: r-isoformswitchanalyzer: Update to 1.21.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.21.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus a0846151b3
gnu: r-iranges: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 116bc67509
gnu: r-infercnv: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 09260401c4
gnu: r-ideoviz: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.36.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus e057271297
gnu: r-bluster: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.10.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 0ef0e70d81
gnu: r-dss: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.48.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 72bfb25766
gnu: r-drimseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c901f7c4f3
gnu: r-dmrcate: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus b23aac21d5
gnu: r-derfinderhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus b7b1423882
gnu: r-delayedarray: Update to 0.25.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.25.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c179c05e35
gnu: r-deepsnv: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.46.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 57bb01b808
gnu: r-decoupler: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 28b2d8a1e3
gnu: r-deconvr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 228c0fae2b
gnu: r-decontam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.20.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 37a7539db3
gnu: r-deconrnaseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.42.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 8ccd86a17b
gnu: r-decomptumor2sig: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c9794ffe59
gnu: r-decipher: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 52e738d346
gnu: r-debcam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.18.0.
[source]: Delete bundled Java archives.
[arguments]: Add phase 'build-jar; add phase 'strip-jar-timestamps; do a fake
installation and disable tests due to a regression in R 4.3.0.
[inputs]: Replace openjdk with icedtea:jdk; add java-pj.
[native-inputs]: Add zip.
 2023-04-29 20:27:17 +02:00
Ricardo Wurmus 2bf6f659c4
gnu: Add java-pj. 
* gnu/packages/java.scm (java-pj): New variable.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4837210129
gnu: r-dearseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 8f93a53a4c
gnu: r-damefinder: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 01ba2a24d2
gnu: r-dama: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-dama): Update to 1.72.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 9b305554a3
gnu: r-cummerbund: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.42.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 6233b26d1d
gnu: r-coverageview: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus f869abfae3
gnu: r-cardelino: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 084e990d2f
gnu: r-breakpointr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.18.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus cb191936d8
gnu: r-biocgenerics: Update to 0.46.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.46.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 3b302bdf35
gnu: r-biocversion: Update to 3.17.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.17.1.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus ae85652e4b
gnu: r-barcodetrackr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.8.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 41bff44b32
gnu: r-banocc: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.24.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus c6d14bd6fb
gnu: r-bandits: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 7bce4cdacb
gnu: r-bambu: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4f4d38cc4d
gnu: r-badregionfinder: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.28.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus e10c8fe41a
gnu: r-bader: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bader): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00