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1836 Commits (04680bfb0f7fb312b4afed7b8ddc2dc8b6b413f9)

Author SHA1 Message Date
Ricardo Wurmus 56a2dcfdc7
gnu: r-motifmatchr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.14.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 0b6b42b6c4
gnu: r-tfbstools: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.30.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus a92a277873
gnu: r-cner: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.28.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 370d020e88
gnu: r-beachmat: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.0.
[propagated-inputs]: Add r-rcpp.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus dbb929bf4a
gnu: r-hitc: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.36.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 914bd41da9
gnu: r-fithic: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.18.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 64b03c66ad
gnu: r-rgraphviz: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.36.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 5565b8bada
gnu: r-s4vectors: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus a78daaa572
gnu: r-preprocesscore: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.54.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus a9f203ba6c
gnu: r-icens: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.64.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 3b19239c0f
gnu: r-m3c: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.14.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 06dd2fd625
gnu: r-rgreat: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.24.0.
 2021-06-05 09:12:56 +02:00
Ricardo Wurmus 5d611d3f15
gnu: r-pcatools: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.4.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus db46064043
gnu: r-biodist: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.64.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 36f51f8afe
gnu: r-biocworkflowtools: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.18.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus e828fa21bb
gnu: r-biocset: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus e9e4f65dc1
gnu: r-biocpkgtools: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.1.
[propagated-inputs]: Remove r-rappdirs.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 2023951c8e
gnu: r-biocor: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.16.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 4faded238e
gnu: r-bioconcotk: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus e7b465e81b
gnu: r-multiassayexperiment: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.18.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 37f824c5e7
gnu: r-grohmm: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.26.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 28613e1000
gnu: r-experimenthub: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.0.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 1e2c0e824c
gnu: r-biocviews: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.60.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 6513592747
gnu: r-biocstyle: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus cd9af2379d
gnu: r-biocgraph: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.54.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 834a6dbaab
gnu: r-ebarrays: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.56.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus f218b9b216
gnu: r-reactomepa: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.36.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus a95a14c0cc
gnu: r-graphite: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.38.0.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus dc2878754c
gnu: r-biobroom: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.24.0.
 2021-06-05 09:12:55 +02:00
Ricardo Wurmus 7c990fbcb3
gnu: r-bioassayr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.30.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 02ec364cf6
gnu: r-chemminer: Update to 3.44.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.44.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 8a8f200703
gnu: r-bigpint: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.8.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 90eb7ae1a9
gnu: r-biggr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.28.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 302929da31
gnu: r-hyperdraw: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.44.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus d51885812f
gnu: r-hypergraph: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.64.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 92f5efa65d
gnu: r-rsbml: Update to 2.50.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.50.0.
[inputs]: Remove zlib.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 58b8ed9f08
gnu: r-bifet: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.12.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 49403e8241
gnu: r-bicare: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.50.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 3c64554bbc
gnu: r-bhc: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.44.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus bacd432cb1
gnu: r-bgx: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.58.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 51d637a32d
gnu: r-bgmix: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.52.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus e4087ae9c9
gnu: r-universalmotif: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.1.
[propagated-inputs]: Remove r-ggseqlogo and r-rdpack.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 56ec3a6fb9
gnu: r-unifiedwmwqpcr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.28.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 58f2abfbce
gnu: r-htqpcr: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.46.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 2ca9f4fe9b
gnu: r-variancepartition: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.22.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 27e06000b1
gnu: r-variantfiltering: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.28.0.
 2021-06-05 09:12:54 +02:00
Ricardo Wurmus 7a287bc670
gnu: r-timeseriesexperiment: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 99496a17f5
gnu: r-wavcluster: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.26.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 66e45a9f1f
gnu: r-reqon: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.38.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 0615d394c9
gnu: r-seqbias: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.40.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 988337d87b
gnu: r-bigmelon: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.18.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 0cc4deb017
gnu: r-gdsfmt: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus d0c36449d2
gnu: r-watermelon: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.36.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 125ffdf788
gnu: r-roc: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.68.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus bb3ef4894b
gnu: r-genie3: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus d37ae38d19
gnu: r-circrnaprofiler: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.6.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus cec7972759
gnu: r-cicero: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus f9049add35
gnu: r-rcistarget: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.12.0.
[propagated-inputs]: Add r-arrow, r-dplyr, r-genomeinfodb, r-genomicranges, and r-tibble.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 9c0b691a29
gnu: r-depecher: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.8.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 480dcf3038
gnu: r-mixomics: Update to 6.16.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 9ed2ec5bff
gnu: r-flowsom: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.0.0.
[propagated-inputs]: Remove r-tsne; add r-colorramps, r-dplyr, r-ggforce, r-ggnewscale,
r-ggplot2, r-ggpointdensity, r-ggpubr, r-ggrepel, r-magrittr,
r-pheatmap, r-rlang, r-rtsne, r-scattermore, and r-tidyr.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 53c041713a
gnu: r-opencyto: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.4.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus 6489371b80
gnu: r-flowstats: Update to 4.4.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.4.0.
 2021-06-05 09:12:53 +02:00
Ricardo Wurmus a1557adfcf
gnu: r-rprotobuflib: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.4.0.
[arguments]: Adjust build phase "unpack-bundled-sources".
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus c474b4784e
gnu: r-flowclust: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.30.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 57a41cd789
gnu: r-flowviz: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.56.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 417b4108bc
gnu: r-ggcyto: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.20.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 5e49dfd00e
gnu: r-flowmeans: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.52.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 19855b595c
gnu: r-flowcore: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.4.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 4299d97756
gnu: r-consensusclusterplus: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.56.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 6a7589de24
gnu: r-flowutils: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.56.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus db56495f39
gnu: r-rsubread: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.1.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 758c1cd3c2
gnu: r-annotatr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 28472b62d3
gnu: r-biosigner: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.20.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 3501292721
gnu: r-ropls: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.24.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 3d9b6386fa
gnu: r-multidataset: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.20.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus f9c306eb01
gnu: r-birewire: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.24.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus ec78a01db3
gnu: r-rqc: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.26.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus f039c22c97
gnu: r-quasr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.32.0.
[propagated-inputs]: Remove r-genomicalignments and r-rhisat2.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus 274b1e2e16
gnu: r-rhisat2: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.8.0.
 2021-06-05 09:12:52 +02:00
Ricardo Wurmus eca0820c77
gnu: r-sgseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.26.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 0e74fff5eb
gnu: r-rbowtie: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.32.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 69295659be
gnu: r-iclusterplus: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.28.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 46fc0334ff
gnu: r-biocfilecache: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.0.0.
[propagated-inputs]: Add r-filelock.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 1dce605505
gnu: r-arrmnormalization: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.32.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 7cf4911aa2
gnu: r-progeny: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.14.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 25ba2d38a1
gnu: r-rbowtie2: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.14.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 6145252f1a
gnu: r-zfpkm: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.14.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus fc400d10c0
gnu: r-zinbwave: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.1.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 34137c2145
gnu: r-webbioc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.64.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 3a7ad7fb8a
gnu: r-widgettools: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.70.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus e91b4088f2
gnu: r-wiggleplotr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.16.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 2da5ef4c55
gnu: r-wrench: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.10.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus d463b4006d
gnu: r-xcms: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus ef30a43ec7
gnu: r-massspecwavelet: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.58.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 48737e92e4
gnu: r-roar: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.28.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 4a9e3d2fbe
gnu: r-yarn: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.18.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus 8d6a721a94
gnu: r-quantro: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.26.0.
 2021-06-05 09:12:51 +02:00
Ricardo Wurmus a72006c9b0
gnu: r-gcrma: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.64.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 995c43885e
gnu: r-yapsa: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.18.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 774e916736
gnu: r-somaticsignatures: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.28.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 79469116bd
gnu: r-gtrellis: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.24.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 9866a9b984
gnu: r-yamss: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.18.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 3e1c585523
gnu: r-ebimage: Update to 4.34.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.34.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 7238b33185
gnu: r-aucell: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.14.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 51e7e0145b
gnu: r-allelicimbalance: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.30.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 0cef014f7c
gnu: r-annotationtools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.66.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 77a1c4a6aa
gnu: r-abaenrichment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.22.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus b7f6999ee4
gnu: r-gofuncr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.12.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 2357a732e5
gnu: r-atacseqqc: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.16.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 4627fefcdc
gnu: r-genomicscores: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.4.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 6e762d2f5a
gnu: r-motifstack: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.36.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus 1390f426db
gnu: r-motifbreakr: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.0.
 2021-06-05 09:12:50 +02:00
Ricardo Wurmus b532b80afb
gnu: r-motifdb: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.34.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus f16dcdc1bf
gnu: r-rgadem: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 2ace8e39c9
gnu: r-bacon: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.20.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 33bf7b57b1
gnu: r-abseqr: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.10.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 822024e6f9
gnu: r-a4: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 76fb2de29b
gnu: r-a4base: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 1217dab2e2
gnu: r-a4reporting: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 751b4904b0
gnu: r-a4preproc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 319d9dcfb2
gnu: r-a4classif: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 2aad8aa075
gnu: r-a4core: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.40.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 387c023105
gnu: r-annaffy: Update to 1.63.1. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.63.1.
[propagated-inputs]: Add r-biocmanager.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus ad3b03d6ad
gnu: r-mlinterfaces: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.72.0.
[propagated-inputs]: Add r-magrittr.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 2a7532cca8
gnu: r-clusterexperiment: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.12.0.
[propagated-inputs]: Remove r-rspectra; add r-biocsingular.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 2b4c784b2b
gnu: r-clusterprofiler: Update to 4.0.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 8b0dc8e39c
gnu: r-enrichplot: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.0.
[propagated-inputs]: Add r-ggtree.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus ca136dd70a
gnu: r-dose: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus c8bec0d962
gnu: r-fgsea: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.18.0.
 2021-06-05 09:12:49 +02:00
Ricardo Wurmus 1bfe5c274f
gnu: r-sigpathway: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.60.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus dda291540b
gnu: r-anota: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.40.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 376d9dd825
gnu: r-gosemsim: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.18.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus faf60162a3
gnu: r-heatplus: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.0.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 1ade726fdf
gnu: r-varianttools: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.34.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 2c5bba1392
gnu: r-tradeseq: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.6.0.
[propagated-inputs]: Remove r-clusterexperiment and r-dplyr; add r-matrix, r-matrixstats,
and r-viridis.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 0c35cde14f
gnu: r-ioniser: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.16.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus ac150da152
gnu: r-linnorm: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.16.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus f1635d65e7
gnu: r-lumi: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.44.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 973d33484b
gnu: r-methylumi: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.38.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus a387e1d89c
gnu: r-minfi: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.38.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 136adea01b
gnu: r-bumphunter: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.34.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 18c81e5615
gnu: r-siggenes: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.66.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 7e29fb98e1
gnu: r-illuminaio: Update to 0.34.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.34.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 23d3d7af06
gnu: r-geoquery: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.60.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 6db7802b5b
gnu: r-scone: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.0.
[propagated-inputs]: Add r-matrixgenerics and r-singlecellexperiment.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus 611024367b
gnu: r-scdd: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.16.0.
 2021-06-05 09:12:48 +02:00
Ricardo Wurmus d7390d7c63
gnu: r-noiseq: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.36.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 716ac28a58
gnu: r-monocle: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 12ec22ca50
gnu: r-mast: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.18.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 79928c5e58
gnu: r-icobra: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 2ed5a0844e
gnu: r-ihw: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 0c15284ad0
gnu: r-lpsymphony: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.20.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus c63c44190d
gnu: r-karyoploter: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.18.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 9a67123210
gnu: r-ebseq: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.32.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 729f6adcf4
gnu: r-dnacopy: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.66.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus ac27feed69
gnu: r-copynumber: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.32.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 749cf40ecc
gnu: r-chipexoqual: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.16.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus a10f236ca3
gnu: r-savr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.30.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 8aef574b84
gnu: r-biocsingular: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.0.
[propagated-inputs]: Add r-scaledmatrix.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus f5ae14832c
gnu: r-biocneighbors: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.10.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 618f98c022
gnu: r-ruvseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.26.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus cac2839447
gnu: r-dnabarcodes: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.22.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus c6078d915d
gnu: r-inspect: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.22.0.
 2021-06-05 09:12:47 +02:00
Ricardo Wurmus 79c1e0335f
gnu: r-plgem: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.64.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 481c3222e6
gnu: r-rots: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.20.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 089f64657b
gnu: r-glimma: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.2.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 4485bc7183
gnu: r-goseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.44.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 87d6e68015
gnu: r-ctc: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.66.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 675f1a9144
gnu: r-genomicinteractions: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus ba7757cf1f
gnu: r-interactionset: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.20.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 43a0a48a69
gnu: r-riboseqr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 0443b3c180
gnu: r-riboprofiling: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.22.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus afc59d2e2c
gnu: r-chipcomp: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.22.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 38f2e3979f
gnu: r-bayseq: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.26.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 11c7a044bd
gnu: r-qdnaseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.28.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 1c3e239270
gnu: r-cghcall: Update to 2.54.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.54.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 09c90d8fb4
gnu: r-cghbase: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.52.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 0045d21f67
gnu: r-marray: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.70.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 202202c8ad
gnu: r-matrixgenerics: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus 538605493c
gnu: r-chippeakanno: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.0.
[propagated-inputs]: Add r-interactionset.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus fceca5cd82
gnu: r-graph: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.70.0.
 2021-06-05 09:12:46 +02:00
Ricardo Wurmus bed64f7be6
gnu: r-multtest: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.48.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus ff7a86f0ca
gnu: r-mbkmeans: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.8.0.
[propagated-inputs]: Remove r-bluster; add r-rcpparmadillo.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 27abca93b1
gnu: r-diffbind: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.1.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 737a228702
gnu: r-greylistchip: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.24.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 941a868515
gnu: r-apeglm: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 371149da6f
gnu: r-qvalue: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 359c350c7d
gnu: r-oligo: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 2c9c656f47
gnu: r-oligoclasses: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus c68607725b
gnu: r-geneplotter: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 473371dfc1
gnu: r-zlibbioc: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 092d2a8d85
gnu: r-xvector: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus e4a34df239
gnu: r-vsn: Update to 3.60.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 2817a8f292
gnu: r-tximport: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus ad6ba3de65
gnu: r-topgo: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 7728c5909f
gnu: r-systempiper: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 81c55df9a8
gnu: r-sva: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
 2021-06-05 09:12:45 +02:00
Ricardo Wurmus 6eaa9221d9
gnu: r-summarizedexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
 2021-06-05 09:12:44 +02:00