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59229 Commits (051a45e642ff21908375bee24d272c536096d026)

Author SHA1 Message Date
Nicolas Goaziou 0f9331e486
gnu: Update emacs-modus-themes.
* gnu/packages/emacs-xyz.scm (emacs-modus-operandi-theme):
(emacs-modus-vivendi-theme): Update to 0.8.0.
2020-05-01 16:10:15 +02:00
Florian Pelz fd31731b9d
system: Blacklist usbkbd kernel module in default kernel-arguments.
This is said to avoid a race with the usbhid kernel module.
See <https://issues.guix.gnu.org/35574#18>.

* gnu/system.scm (%default-modprobe-blacklist): Blacklist it.
2020-05-01 12:27:52 +00:00
Raghav Gururajan 53e8b852e9
gnu: spacefm: Fix privilege and disk management.
* gnu/packages/lxde.scm (spacefm)[inputs]: Remove dbus.
Add ktsuss.
[arguments]<#:phases>[patch-source-files]: New phase.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-05-01 14:10:33 +02:00
Florian Pelz e06664da02
system: Blacklist usbmouse kernel module in default kernel-arguments.
This avoids a race with the bcm5974 kernel module.
Fixes <https://bugs.gnu.org/35574>.

* gnu/system.scm (%default-modprobe-blacklist): New variable.
(<operating-system>)[kernel-arguments]: Default to ...
(%default-kernel-arguments): ... this new variable.
* doc/guix.texi (operating-system Reference): Document the change.
2020-05-01 08:46:59 +00:00
Florian Pelz 73ddcab607
Revert "install: Pass "modprobe.blacklist=radeon"."
This reverts commit 7859191210, which is no longer
needed since uvesafb was added in 557e6820a7.
2020-05-01 08:26:07 +00:00
Leo Famulari 5af110868c
gnu: VLC: Update to 3.0.10.
* gnu/packages/patches/vlc-fix-test_libvlc_slaves.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (vlc): Update to 3.0.10.
[source]: Remove obsolete patch.
[arguments]: Remove obsolete workarounds for libssh and fribidi
compatibility issues in 'patch-source' phase.
2020-04-30 21:31:15 -04:00
Leo Famulari 65fd3f0ac3
gnu: libmicrodns: Update to 0.1.2 [security fixes].
This fixes CVE-2020-6071, CVE-2020-6072, CVE-2020-6073, CVE-2020-6077,
CVE-2020-6078, and CVE-2020-6079.

* gnu/packages/dns.scm (libmicrodns): Update to 0.1.2.
[source]: Build from a tarball.
[build-system]: Use the meson-build-system.
[native-inputs]: Remove field.
2020-04-30 21:31:11 -04:00
Brice Waegeneire 02ee43e486
gnu: Add usbguard.
* gnu/packages/hardware.scm (usbguard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:04 +02:00
Brice Waegeneire 22df0a1f59
gnu: Add libqb.
* gnu/packages/hardware.scm (libqb): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:04 +02:00
Brice Waegeneire 135c1e0e43
gnu: umockdev: Fix test.
* gnu/packages/check.scm (umockdev)[inputs]: Remove
'gobject-introspection'.
[arguments]: Replace phase 'skip-broken-test' by 'fix-test'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:04 +02:00
Jean-Baptiste Note 524e5fe56b
gnu: Add apt-mirror.
* gnu/packages/debian.scm (apt-mirror): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:03 +02:00
Rene Saavedra 7ff2159b10
gnu: balsa: Update to 2.6.0.
* gnu/packages/mail.scm (balsa): Update to 2.6.0.
[inputs]: Replace gmime-2.6 with gmime; add libical and libsecret.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-01 01:21:03 +02:00
Ludovic Courtès 69de98391d
profiles: Mark manual database as non-substitutable.
Fixes <https://bugs.gnu.org/40381>.
Reported by pkill9 <pkill9@runbox.com>.

* guix/profiles.scm (manual-database): Pass #:substitutable? #f.
2020-05-01 01:21:03 +02:00
Marius Bakke 229f4fa952
gnu: emacs-toml-mode: Fix syntax error in description.
* gnu/packages/emacs-xyz.scm (emacs-toml-mode)[description]: Replace usage of
@acronym with @dfn to work around a Guile Texinfo limitation.
2020-04-30 23:31:53 +02:00
Leo Famulari 6c7a39c45e
doc: Bootloader Configuration: Fix an obsolete example.
Reported by rawmat on #guix.

* doc/guix.texi (Bootloader Configuration): Replace 'grub-configuration' with
'bootloader-configuration'.
2020-04-30 17:22:01 -04:00
Vagrant Cascadian ac4fefb298
gnu: diffoscope: Update to 143.
* gnu/packages/diffoscope (diffoscope): Update to 143.
  [native-inputs]: Add openssl and python-h5py.
  [arguments] Add openssl to add-known-tools phase.
  [arguments] Remove hdf5 from add-known-tools phase, added upstream.
2020-04-30 13:13:07 -07:00
Leo Famulari 2a94f72ade
gnu: MPD: Update to 0.21.23.
* gnu/packages/mpd.scm (mpd): Update to 0.21.23.
2020-04-30 14:17:49 -04:00
Simon Josefsson 194cb75d85
gnu: libntlm: Update to 1.6 [fixes CVE-2019-17455].
* gnu/packages/gsasl.scm (libntlm): Update to 1.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-30 12:50:06 -04:00
Pierre Neidhardt 192177b049
gnu: sbcl-osicat: Fix library path.
* gnu/packages/lisp-xyz.scm (sbcl-osicat)[arguments]: Replace 'cleanup phase
  to preserve the location of libosicat.so so that it can be found when
  loading the system.
2020-04-30 16:57:40 +02:00
Ricardo Wurmus 24599740e7
gnu: r-vgam: Update to 1.1-3.
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-3.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
2020-04-30 15:37:22 +02:00
Ricardo Wurmus 0ffd9701f5
gnu: r-rcpparmadillo: Update to 0.9.870.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.870.2.0.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 599f2b50de
gnu: r-spatial: Update to 7.3-12.
* gnu/packages/statistics.scm (r-spatial): Update to 7.3-12.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus aad9233c1d
gnu: r-nnet: Update to 7.3-14.
* gnu/packages/statistics.scm (r-nnet): Update to 7.3-14.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 9c313889f1
gnu: r-kernsmooth: Update to 2.23-17.
* gnu/packages/statistics.scm (r-kernsmooth): Update to 2.23-17.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 1cf9a5cd75
gnu: r-foreign: Update to 0.8-79.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-79.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 175ec5eff4
gnu: r-class: Update to 7.3-17.
* gnu/packages/statistics.scm (r-class): Update to 7.3-17.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus b2c95239e0
gnu: r-mass: Update to 7.3-51.6.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.6.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 1b6434a324
gnu: r-boot: Update to 1.3-25.
* gnu/packages/statistics.scm (r-boot): Update to 1.3-25.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus c54b41093d
gnu: r-kutils: Update to 1.70.
* gnu/packages/cran.scm (r-kutils): Update to 1.70.
[propagated-inputs]: Remove r-lavaan.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 2a749c8596
gnu: r-univoutl: Update to 0.2.
* gnu/packages/cran.scm (r-univoutl): Update to 0.2.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus d7a29bd586
gnu: r-graphlayouts: Update to 0.7.0.
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.7.0.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus aa180e9e03
gnu: r-systemfonts: Update to 0.2.1.
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.1.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 8dfa9ab05a
gnu: r-ggfortify: Update to 0.4.10.
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.10.
2020-04-30 15:37:21 +02:00
Ricardo Wurmus 7d1e02c872
gnu: r-dalex: Update to 1.2.1.
* gnu/packages/cran.scm (r-dalex): Update to 1.2.1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 1514fa85e4
gnu: r-arm: Update to 1.11-1.
* gnu/packages/cran.scm (r-arm): Update to 1.11-1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus b5ea7affcf
gnu: r-usethis: Update to 1.6.1.
* gnu/packages/cran.scm (r-usethis): Update to 1.6.1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 78b686824d
gnu: r-rootsolve: Update to 1.8.2.1.
* gnu/packages/cran.scm (r-rootsolve): Update to 1.8.2.1.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 0ec790f82d
gnu: r-proxy: Update to 0.4-24.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-24.
2020-04-30 15:37:20 +02:00
Ricardo Wurmus 0590673090
gnu: r-pkgbuild: Update to 1.0.7.
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.7.
2020-04-30 15:37:20 +02:00
Roel Janssen eca648b65b
gnu: Add miniasm.
* gnu/packages/bioinformatics.scm (miniasm): New variable.
2020-04-30 15:30:16 +02:00
Ricardo Wurmus e174231863
gnu: Add one more missing module import.
This is a follow-up to commit 61fc72d3ac.

* gnu/packages/backup.scm: Add missing import of (gnu packages protobuf).
2020-04-30 14:44:45 +02:00
Ricardo Wurmus 4ac3996036
gnu: Add missing module import.
This is a follow-up to commit 61fc72d3ac.

* gnu/packages/backup.scm: Add missing import of (guix build-system cmake).
2020-04-30 14:41:53 +02:00
Nicolas Goaziou 61fc72d3ac
gnu: Add zbackup.
* gnu/packages/backup.scm (zbackup): New variable.
2020-04-30 14:04:05 +02:00
Ricardo Wurmus cf1ae79375
gnu: python2-pysnptools: Update to 0.4.11.
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.4.11;
implement in terms of...
(python-pysnptools): ...this new variable.
[propagated-inputs]: Add python-dill, python-h5py, and python-psutil.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus 46d07f8472
gnu: kaldi-gstreamer-server: Fix bug.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[arguments]: Patch
master_server.py before build.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus cb44af24c8
gnu: kaldi-gstreamer-server: Use Tornado 6.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server)[inputs]: Replace
python-tornado with python-tornado-6.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus 7395047017
gnu: Add python-tornado-6.
* gnu/packages/python-web.scm (python-tornado-6): New variable.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus 4a148c6da3
gnu: python2-warpedlmm: Fix build.
* gnu/packages/bioinformatics.scm (python2-warpedlmm)[propagated-inputs]: Add
python2-weave.
[arguments]: Disable tests and add "use-weave" phase.
2020-04-30 13:08:33 +02:00
Ricardo Wurmus ed33317893
gnu: Add python2-weave.
* gnu/packages/python-science.scm (python2-weave): New variable.
2020-04-30 13:08:33 +02:00
Eric Brown 1b73fbdf5e
gnu: Add r-rserve.
* gnu/packages/cran.scm (r-rserve): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-30 13:08:33 +02:00