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3579 Commits (06986a86ad41621240e8d7c9ad788102479be53e)

Author SHA1 Message Date
Ricardo Wurmus 06986a86ad
gnu: r-missmethyl: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.34.0.
 2023-04-29 20:09:31 +02:00
Ricardo Wurmus 9b03d78000
gnu: r-glimma: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.10.0.
[source]: Delete minified JavaScript files.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add esbuild.
 2023-04-29 20:09:31 +02:00
Ricardo Wurmus 9619504c81
gnu: r-reportingtools: Update to 2.39.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.39.0.
[source]: Delete minified JavaScript files.
[arguments]: Add 'process-javascript phase.
[native-inputs]: Add source code for jquery 1.8.0.
 2023-04-29 20:09:31 +02:00
Ricardo Wurmus 91204fc357
gnu: Add r-densvis. 
* gnu/packages/bioconductor.scm (r-densvis): New variable.
 2023-04-29 20:09:31 +02:00
Ricardo Wurmus 6834f24096
gnu: r-dmrseq: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.1.
 2023-04-19 20:12:28 -04:00
Ricardo Wurmus f26cf1895b
gnu: r-beachmat: Update to 2.14.2. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.14.2.
 2023-04-19 20:12:28 -04:00
Ricardo Wurmus cb85ea56a2
gnu: r-gdsfmt: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.34.1.
 2023-04-19 20:12:28 -04:00
Ricardo Wurmus 5ccd264893
gnu: r-ebimage: Update to 4.40.1. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.40.1.
 2023-04-19 20:12:27 -04:00
Ricardo Wurmus d2485dde5b
gnu: r-enrichplot: Update to 1.18.4. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.4.
 2023-04-19 20:12:27 -04:00
Ricardo Wurmus 6d10745d6b
gnu: r-structuralvariantannotation: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.14.1.
 2023-04-19 20:12:27 -04:00
Ricardo Wurmus ec37e00e90
gnu: r-rhdf5: Update to 2.42.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.42.1.
 2023-04-19 20:12:27 -04:00
Ricardo Wurmus 60dccb6a62
gnu: r-numbat: Update to 1.3.0. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.0.
 2023-04-06 17:33:12 +02:00
Ricardo Wurmus 11956155e5
gnu: r-bionero: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.6.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 04b87844df
gnu: r-flowclust: Update to 3.36.1. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.36.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 44599e7966
gnu: r-rhdf5filters: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.10.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 4afcef7847
gnu: r-biomart: Update to 2.54.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.54.1.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 91c41b8ce7
gnu: r-annotationforge: Update to 1.40.2. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.40.2.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 473bd926cf
gnu: r-anvil: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.10.2.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 2c3383e8d8
gnu: r-amaretto: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.14.0.
 2023-03-31 15:25:24 +02:00
Ricardo Wurmus 928e9aa236
gnu: Add r-shinymethyl. 
* gnu/packages/bioconductor.scm (r-shinymethyl): New variable.
 2023-03-30 14:35:50 +02:00
Ricardo Wurmus a5997202b8
gnu: Add r-flowsorted-blood-epic. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): New variable.
 2023-03-30 14:34:05 +02:00
Ricardo Wurmus 0024e4e6d4
gnu: Add r-flowsorted-blood-450k. 
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): New variable.
 2023-03-30 14:33:59 +02:00
Ricardo Wurmus e93a570fd6
gnu: Add r-enmix. 
* gnu/packages/bioconductor.scm (r-enmix): New variable.
 2023-03-30 14:31:02 +02:00
Ricardo Wurmus 96e81b18b9
gnu: Add r-champ. 
* gnu/packages/bioconductor.scm (r-champ): New variable.
 2023-03-30 14:26:40 +02:00
Ricardo Wurmus bd35053677
gnu: Add r-dmrcate. 
* gnu/packages/bioconductor.scm (r-dmrcate): New variable.
 2023-03-30 14:22:27 +02:00
Ricardo Wurmus a969d91ca5
gnu: Add r-dss. 
* gnu/packages/bioconductor.scm (r-dss): New variable.
 2023-03-30 14:15:59 +02:00
Ricardo Wurmus 6d1cc311e5
gnu: Add r-missmethyl. 
* gnu/packages/bioconductor.scm (r-missmethyl): New variable.
 2023-03-30 14:10:45 +02:00
Ricardo Wurmus de1c49c25d
gnu: Add r-illuminahumanmethylationepicanno-ilm10b4-hg19. 
* gnu/packages/bioconductor.scm
(r-illuminahumanmethylationepicanno-ilm10b4-hg19): New variable.
 2023-03-30 14:07:42 +02:00
Ricardo Wurmus 1254ce1342
gnu: Add r-illumina450probevariants-db. 
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): New variable.
 2023-03-30 14:01:42 +02:00
Ricardo Wurmus fcc8b808e7
gnu: Add r-champdata. 
* gnu/packages/bioconductor.scm (r-champdata): New variable.
 2023-03-30 13:55:40 +02:00
Ricardo Wurmus 2f9b2699b1
gnu: Add r-globaltest. 
* gnu/packages/bioconductor.scm (r-globaltest): New variable.
 2023-03-30 13:29:08 +02:00
Ricardo Wurmus 09496d569a
gnu: Add r-isva. 
* gnu/packages/bioconductor.scm (r-isva): New variable.
 2023-03-30 13:24:13 +02:00
Ricardo Wurmus a545bdd0c1
gnu: Add r-minfidata. 
* gnu/packages/bioconductor.scm (r-minfidata): New variable.
 2023-03-30 13:11:37 +02:00
Ricardo Wurmus 9e5a079eb4
gnu: Add r-illuminahumanmethylation450kmanifest. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kmanifest): New
variable.
 2023-03-30 13:11:19 +02:00
Ricardo Wurmus e42e4cecd0
gnu: Add r-flowai. 
* gnu/packages/bioconductor.scm (r-flowai): New variable.
 2023-03-30 13:03:30 +02:00
Ricardo Wurmus 766479ca25
gnu: r-nmf: Update to 0.26. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.26.
 2023-03-21 12:31:30 +01:00
Ricardo Wurmus 326be9abff
gnu: r-singlecellexperiment: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.20.1.
 2023-03-21 09:36:15 +01:00
Ricardo Wurmus fa048ce50e
gnu: r-variancepartition: Update to 1.28.9. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.9.
 2023-03-21 09:36:15 +01:00
Ricardo Wurmus 481abed581
gnu: r-biocparallel: Update to 1.32.6. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.6.
 2023-03-21 09:36:15 +01:00
Mădălin Ionel Patrașcu 2336d5f57a
gnu: Add r-annotationhubdata. 
* gnu/packages/bioconductor.scm (r-annotationhubdata): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu 40b79eafee
gnu: Add r-affylmgui. 
* gnu/packages/bioconductor.scm (r-affylmgui): New variable.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu 9f09ac6b21
gnu: Add r-affyplm. 
* gnu/packages/bioconductor.scm (r-affyplm): New variable.
 2023-03-20 18:25:10 +01:00
Mădălin Ionel Patrașcu 284b5eca60
gnu: Add r-affyilm. 
* gnu/packages/bioconductor.scm (r-affyilm): New variable.
 2023-03-20 18:25:10 +01:00
Ricardo Wurmus a28a357675
gnu: r-mutoss: Update to 0.1-13. 
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 55710837d9
gnu: r-valr: Update to 0.6.7. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus ab428404de
gnu: r-numbat: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
 2023-03-19 16:11:53 +01:00
Ricardo Wurmus 953d808d28
gnu: r-biocthis: Update to 1.8.3. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.8.3.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 81697789df
gnu: r-chromvar: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.2.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus d9f29e0342
gnu: r-fishpond: Update to 2.4.1. 
* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.4.1.
[propagated-inputs]: Remove r-rcpp.
 2023-03-15 17:40:42 +01:00
Ricardo Wurmus 0d90a01416
gnu: r-s4vectors: Update to 0.36.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.2.
 2023-03-15 17:40:42 +01:00