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84638 Commits (11cf6d399cc5aa65519737b76a58c8b5629d743a)

Author SHA1 Message Date
Ricardo Wurmus 11cf6d399c
gnu: r-dose: Update to 3.18.3. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.3.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus b4888a5581
gnu: r-genefilter: Update to 1.74.1. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.1.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 218912f6ad
gnu: r-annotationhub: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.2.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 0bb9c9a723
gnu: r-annotationforge: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.1.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus d54a4285ea
gnu: bedtools-2.18: Fix build with newer toolchain. 
* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Add phase
'compatibility, fixing syntax quirks that are problematic with newer
toolchains.
[native-inputs]: Do not inherit.
[inherit]: Do not inherit.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 3c3d7f0410
gnu: r-biocthis: Set HOME variable. 
* gnu/packages/bioconductor.scm (r-biocthis)[arguments]: Add build phase
'set-HOME.
 2021-11-03 21:07:29 +00:00
Mădălin Ionel Patrașcu 4f9f2539f3
gnu: Add r-zellkonverter. 
* gnu/packages/bioconductor.scm (r-zellkonverter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus b36fc71953
gnu: r-lubridate: Update to 1.8.0. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.8.0.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus ca6798d7d3
gnu: r-robustbase: Update to 0.93-9. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-9.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus a0f8df49dc
gnu: r-ztable: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-ztable): Update to 0.2.3.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus 34a9cca76c
gnu: r-hmisc: Update to 4.6-0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.6-0.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus ee8094c640
gnu: r-plotly: Update to 4.10.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.0.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus f86e606155
gnu: r-tidyr: Update to 1.1.4. 
* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.4.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus e49de81b3d
gnu: r-viridis: Update to 0.6.2. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.2.
 2021-11-03 21:07:29 +00:00
Ricardo Wurmus af55b6c7f5
gnu: r-mvtnorm: Update to 1.1-3. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-3.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 66767856a3
gnu: r-rcpparmadillo: Update to 0.10.7.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.7.0.0.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus b3d04cd11e
gnu: r-readr: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-readr): Update to 2.0.2.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus d2cabb2474
gnu: r-desc: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-desc): Update to 1.4.0.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 9f46618044
gnu: r-data-table: Update to 1.14.2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.14.2.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 56703a6a1e
gnu: r-tibble: Update to 3.1.5. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.5.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 34244f64df
gnu: r-rlang: Update to 0.4.12. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.12.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus da7d8aab1c
gnu: r-testthat: Update to 3.1.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.1.0.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 0ee5a2c170
gnu: r-knitr: Update to 1.36. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.36.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 4ea639a14a
gnu: r-mime: Update to 0.12. 
* gnu/packages/statistics.scm (r-mime): Update to 0.12.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 0178f11814
gnu: r-stringi: Update to 1.7.5. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.5.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus b2245f66f6
gnu: r-mgcv: Update to 1.8-38. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-38.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus fb735f7de9
gnu: r-logger: Update to 0.2.2. 
* gnu/packages/cran.scm (r-logger): Update to 0.2.2.
 2021-11-03 21:07:28 +00:00
Ricardo Wurmus 9a54f60ba3
gnu: r-paws-common: Update to 0.3.13. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.3.13.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus ccc23f0e59
gnu: r-dismo: Update to 1.3-5. 
* gnu/packages/cran.scm (r-dismo): Update to 1.3-5.
[propagated-inputs]: Add r-terra.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus f8e998d9aa
gnu: r-ztpln: Update to 0.1.2. 
* gnu/packages/cran.scm (r-ztpln): Update to 0.1.2.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus 745dac9391
gnu: r-keras: Update to 2.6.1. 
* gnu/packages/cran.scm (r-keras): Update to 2.6.1.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus e50595af50
gnu: r-stringfish: Update to 0.15.4. 
* gnu/packages/cran.scm (r-stringfish): Update to 0.15.4.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus a4ddc61806
gnu: r-exactextractr: Update to 0.7.1. 
* gnu/packages/cran.scm (r-exactextractr): Update to 0.7.1.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus b8cd476693
gnu: r-textplot: Update to 0.2.1. 
* gnu/packages/cran.scm (r-textplot): Update to 0.2.1.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus b774be8a60
gnu: r-lwgeom: Update to 0.2-8. 
* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-8.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus ad8043821a
gnu: r-textshaping: Update to 0.3.6. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.6.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus 80bcd91076
gnu: r-decon: Update to 1.3-4. 
* gnu/packages/cran.scm (r-decon): Update to 1.3-4.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus 06b820105e
gnu: r-seurat: Update to 4.0.5. 
* gnu/packages/cran.scm (r-seurat): Update to 4.0.5.
 2021-11-03 21:07:27 +00:00
Ricardo Wurmus 7494bac621
gnu: r-qtl2: Update to 0.28. 
* gnu/packages/cran.scm (r-qtl2): Update to 0.28.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus f006a08991
gnu: r-qtl: Update to 1.50. 
* gnu/packages/cran.scm (r-qtl): Update to 1.50.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 00fd349975
gnu: r-perm: Update to 1.0-0.2. 
* gnu/packages/cran.scm (r-perm): Update to 1.0-0.2.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus a365fcbc9c
gnu: r-tidymodels: Update to 0.1.4. 
* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.4.
[propagated-inputs]: Add r-hardhat.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 5643a55947
gnu: r-tidytext: Update to 0.3.2. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.3.2.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus d9b0e009c5
gnu: r-workflows: Update to 0.2.4. 
* gnu/packages/cran.scm (r-workflows): Update to 0.2.4.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 2e401e85b5
gnu: r-igraph: Update to 1.2.7. 
* gnu/packages/cran.scm (r-igraph): Update to 1.2.7.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 453ceb8563
gnu: r-exactranktests: Update to 0.8-34. 
* gnu/packages/cran.scm (r-exactranktests): Update to 0.8-34.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 4ccb7b345e
gnu: r-spatstat-geom: Update to 2.3-0. 
* gnu/packages/cran.scm (r-spatstat-geom): Update to 2.3-0.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 1f552f46ce
gnu: r-goftest: Update to 1.2-3. 
* gnu/packages/cran.scm (r-goftest): Update to 1.2-3.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus 2498f757af
gnu: r-memuse: Update to 4.2-1. 
* gnu/packages/cran.scm (r-memuse): Update to 4.2-1.
 2021-11-03 21:07:26 +00:00
Ricardo Wurmus bb3f7c1ae9
gnu: r-lightgbm: Update to 3.3.0. 
* gnu/packages/cran.scm (r-lightgbm): Update to 3.3.0.
 2021-11-03 21:07:26 +00:00