11dc49afc2
gnu: r-diffbind: Update to 3.0.14.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14.
2021-03-15 15:03:07 +01:00
ee61edb621
gnu: r-reportingtools: Update to 2.30.2.
...
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2.
2021-03-15 15:03:07 +01:00
fa227c9640
gnu: r-genomeinfodb: Update to 1.26.4.
...
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4.
2021-03-15 15:03:07 +01:00
b45c625f10
gnu: r-deseq2: Update to 1.30.1.
...
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1.
2021-03-15 15:03:07 +01:00
4ce712aca4
gnu: alacritty: Use more packaged rust libraries.
...
* gnu/packages/terminals.scm (alacritty)[arguments]: Move
rust-bitflags-1, rust-dirs-2, rust-libc-0.2, rust-unicode-width-0.1,
rust-winapi-0.3 from cargo-inputs ...
[inputs]: ... to here.
2021-03-15 15:53:17 +02:00
ca3b97baaa
gnu: rust-dirs-2: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-dirs-2)[inputs]: Add rust-cfg-if-0.1,
rust-dirs-sys-0.3.
2021-03-15 15:53:17 +02:00
a4bbebb2b3
gnu: rust-dirs-sys-0.3: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-dirs-sys-0.3)[inputs]: Add
rust-cfg-if-0.1, rust-libc-0.2, rust-redox-users-0.3, rust-winapi-0.3.
2021-03-15 15:53:17 +02:00
647dfa788e
gnu: rust-lazy-static-1: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-lazy-static-1)[inputs]: Add
rust-spin-0.5.
2021-03-15 15:53:16 +02:00
f69a3fe28c
gnu: alacritty: Use packaged rust-wayland-client.
...
* gnu/packages/terminals.scm (alacritty)[arguments]: Remove
rust-wayland-client-0.28 from cargo-inputs. In custom
'add-absolute-library-references remove substitutions for
rust-wayland-client.
[inputs]: Add rust-wayland-client-0.28.
2021-03-15 15:53:16 +02:00
190e94b278
gnu: rust-glutin-0.26: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-glutin-0.26)
[arguments]: Don't skip build. Remove rust-wayland-client-0.28 from
cargo-inputs.
[inputs]: Add rust-wayland-client-0.28, rust-wayland-egl-0.28.
2021-03-15 15:53:16 +02:00
87d747860d
gnu: rust-winit-0.24: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-winit-0.24)[arguments]: Move
rust-wayland-client-0.28 from cargo-inputs ...
[inputs]: ... to here.
2021-03-15 15:53:16 +02:00
6f655caf42
gnu: rust-wayland-server-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-server-0.28)
[arguments]: Don't skip build. Remove rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28 from cargo-inputs.
[inputs]: Add rust-bitflags-1, rust-downcast-rs-1, rust-lazy-static-1,
rust-libc-0.2, rust-nix-0.18, rust-parking-lot-0.18, rust-scoped-tls-1,
rust-wayland-commons-0.28, rust-wayland-scanner-0.28,
rust-wayland-sys-0.28.
(rust-wayland-server-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
fb6f926193
gnu: rust-wayland-scanner-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-scanner-0.28):
[arguments]: Don't skip build. Remove cargo-inputs.
[inputs]: Add rust-proc-macro2-1, rust-quote-1, rust-xml-rs-0.8.
(rust-wayland-scanner-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
facf27e08b
gnu: rust-wayland-protocols-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-protocols-0.28)
[arguments]: Don't skip build. Remove everything from cargo-inputs
except rust-bitflags-1.
[inputs]: Add rust-bitflags-1, rust-wayland-client-0.28,
rust-wayland-commons-0.28, rust-wayland-scanner-0.28,
rust-wayland-server-0.28.
(rust-wayland-protocols-0.23): Adjust accordingly.
2021-03-15 15:53:16 +02:00
bb06a747b2
gnu: rust-wayland-egl-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-egl-0.28)
[arguments]: Don't skip build. Remove cargo-inputs.
[inputs]: Add rust-wayland-client-0.28, rust-wayland-sys-0.28.
[native-inputs]: Add pkg-config.
2021-03-15 15:53:15 +02:00
3b6ec859c2
gnu: rust-wayland-cursor-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-cursor-0.28)
[arguments]: Don't skip build. Remove rust-wayland-client-0.28 from
cargo-inputs.
[inputs]: Add rust-nix-0.18, rust-wayland-client-0.28, rust-xcursor-0.3.
2021-03-15 15:53:15 +02:00
770e326fdb
gnu: rust-wayland-client-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-client-0.28)
[arguments]: Don't skip build. Remove rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28 from cargo-inputs.
[inputs]: Add rust-bitflags-1, rust-downcast-rs-1, rust-libc-0.2,
rust-nix-0.18, rust-scoped-tls-1, rust-wayland-commons-0.28,
rust-wayland-scanner-0.28, rust-wayland-sys-0.28.
(rust-wayland-client-0.23): Adjust accordingly.
2021-03-15 15:53:15 +02:00
f35ab79e03
gnu: rust-wayland-commons-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-commons-0.28)
[arguments]: Don't skip build. Remove rust-wayland-sys-0.28 from
cargo-inputs.
[inputs]: Add rust-nix-0.18, rust-once-cell-1, rust-smallvec-1,
rust-wayland-sys-0.28.
(rust-wayland-commons-0.23): Adjust accordingly.
2021-03-15 15:53:15 +02:00
b10c637e48
gnu: rust-libloading-0.6: Update to 0.6.7.
...
* gnu/packages/crates-io.scm (rust-libloading-0.6): Update to 0.6.
[arguments]: Replace rust-cfg-if-0.1 with 1.
[inputs]: Add rust-cfg-if-1, rust-winapi-0.3.
2021-03-15 15:53:15 +02:00
bafeee4f6d
gnu: dlib-0.4: Update to 0.4.2.
...
* gnu/packages/crates-io.scm (rust-dlib-0.4): Update to 0.4.2.
[arguments]: Replace rust-libloading-0.5 with 0.6.
[inputs]: Add rust-libloading-0.6.
2021-03-15 15:53:15 +02:00
358f5d9b1b
gnu: rust-proc-macro2-1: Adapt for new build system.
...
* gnu/packages/crates-io.scm (rust-proc-macro2-1)[inputs]: Add
rust-unicode-xid-0.2.
2021-03-15 15:53:15 +02:00
c805bdd550
gnu: rust-winapi-0.3: Adjust for new build system.
...
* gnu/packages/crates-io.scm (rust-winapi-0.3)[inputs]: Add
rust-winapi-i686-pc-windows-gnu, rust-winapi-x86-64-pc-windows-gnu.
2021-03-15 15:53:14 +02:00
12c699572c
gnu: rust-pkg-config-0.3: Hardcode location of pkg-config.
...
* gnu/packages/crates-io.scm (rust-pkg-config-0.3)[arguments]: Add phase
to hardcode location of pkg-config binary.
2021-03-15 15:53:14 +02:00
d499911432
gnu: rust-pkg-config-0.3: Update to 0.3.19.
...
* gnu/packages/crates-io.scm (rust-pkg-config-0.3): Update to 0.3.19.
2021-03-15 15:53:14 +02:00
4363b542f2
gnu: rust-wayland-sys-0.28: Adapt for new build system.
...
* gnu/packages/crates-graphics.scm (rust-wayland-sys-0.28)[arguments]:
Don't skip build. Add phase to refer explicitly to wayland libraries.
[inputs]: Add rust-dlib-0.4, rust-lazy-static-1, rust-libc-0.2,
rust-pkg-config-0.3.
[propagated-inputs]: Add wayland.
(rust-wayland-sys-0.23): Adjust accordingly.
2021-03-15 15:53:14 +02:00
69c757c45a
gnu: rust-quote-1: Update to 1.0.9.
...
* gnu/packages/crates-io.scm (rust-quote-1): Update to 1.0.9.
2021-03-15 15:53:14 +02:00
78e7e178a3
build-system/cargo: Don't clobber packaged crates while building.
...
This fixes an issue where two packages share a common dependent.
* guix/build/cargo-build-system.scm (unpack-rust-crates): Only copy rust
crates into the target directory if there isn't one already there with
the same name.
2021-03-15 15:53:11 +02:00
bf612ead76
gnu: r-variantannotation: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here...
* gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
2021-03-15 14:06:24 +01:00
082f3c5433
gnu: r-edger: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
2021-03-15 14:06:16 +01:00
35b62c044e
gnu: r-genomeinfodb: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
2021-03-15 14:05:56 +01:00
8d6d75ff39
gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here.
[source]: Use 'bioconductor-uri'.
2021-03-15 14:05:47 +01:00
9949f459bf
gnu: r-iranges: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-iranges): Move from here...
* gnu/packages/bioconductor.scm (r-iranges): ...to here.
2021-03-15 14:05:37 +01:00
d64e3a487b
gnu: r-s4vectors: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here...
* gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
2021-03-15 14:05:27 +01:00
852fa82d4c
gnu: r-bioccheck: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here...
* gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
2021-03-15 14:05:22 +01:00
d5576b6eb7
gnu: r-grohmm: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here...
* gnu/packages/bioconductor.scm (r-grohmm): ...to here.
2021-03-15 14:04:26 +01:00
5ac55aea8b
gnu: r-biocstyle: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here...
* gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
2021-03-15 14:03:21 +01:00
134404b437
gnu: r-biocviews: Move to (gnu packages bioconductor).
...
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here...
* gnu/packages/bioconductor.scm (r-biocviews): ...to here.
2021-03-15 14:03:18 +01:00
53dff6ac8f
gnu: r-rsqlite: Update to 2.2.4.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
2021-03-15 13:45:31 +01:00
2e2cc58681
gnu: r-rcpparmadillo: Update to 0.10.2.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
2021-03-15 13:45:31 +01:00
2fc2983e59
gnu: r-formatr: Update to 1.8.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.8.
[native-inputs]: Add r-knitr.
2021-03-15 13:45:31 +01:00
fe903cb89d
gnu: r-survival: Update to 3.2-9.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
2021-03-15 13:45:31 +01:00
bbc542b53c
gnu: r-textshaping: Update to 0.3.2.
...
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
2021-03-15 13:45:31 +01:00
ea23f17ece
gnu: r-mlr3tuning: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
2021-03-15 13:45:31 +01:00
921ecdba7c
gnu: r-bbotk: Update to 0.3.1.
...
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
2021-03-15 13:45:31 +01:00
ee92bb9004
gnu: r-workflows: Update to 0.2.2.
...
* gnu/packages/cran.scm (r-workflows): Update to 0.2.2.
[propagated-inputs]: Add r-vctrs.
2021-03-15 13:45:31 +01:00
e4d4046999
gnu: r-spatstat: Update to 2.0-1.
...
* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1.
[propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv,
r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core,
r-spatstat-geom, and r-spatstat-linnet.
2021-03-15 13:45:31 +01:00
b0036b407c
gnu: r-brms: Update to 2.15.0.
...
* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
2021-03-15 13:45:30 +01:00
7bd5a64303
gnu: r-forecast: Update to 8.14.
...
* gnu/packages/cran.scm (r-forecast): Update to 8.14.
2021-03-15 13:45:30 +01:00
58a2c438d3
gnu: r-lavaan: Update to 0.6-8.
...
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
2021-03-15 13:45:30 +01:00
dae999bc48
gnu: r-parallelly: Update to 1.24.0.
...
* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
2021-03-15 13:45:30 +01:00
Ricardo Wurmus
Efraim Flashner
zimoun