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Author SHA1 Message Date
Ricardo Wurmus bdffd215a6
gnu: r-experimenthub: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.12.0.

Change-Id: I9c78efff6d3cdbb9227a3584048b9ef3eca1c19f
2024-05-08 12:53:37 +02:00
Ricardo Wurmus 2e0f0f44c0
gnu: r-biocviews: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.72.0.

Change-Id: I12ba24d16cce3c9aea674b5a7bb48ae837468fe1
2024-05-08 12:53:37 +02:00
Ricardo Wurmus b9f227c7b8
gnu: r-biocstyle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.32.0.

Change-Id: I88c9702a7c4d1c38a1515055513a24c40531bfd8
2024-05-08 12:53:37 +02:00
Ricardo Wurmus 000a4021b9
gnu: r-biocgraph: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.66.0.

Change-Id: I768ba4f032e742623325ddb1d02ef5603fc6d47b
2024-05-08 12:53:37 +02:00
Ricardo Wurmus 14c7c8d462
gnu: r-bioccheck: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.40.0.

Change-Id: I2ba21396e88a3a0b85ce68150446ca435ba0aef0
2024-05-08 12:53:37 +02:00
Ricardo Wurmus efaa01c156
gnu: r-biocbaseutils: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.6.0.

Change-Id: I4396532de61a7bc06423c7dddaec9af096adb206
2024-05-08 12:53:37 +02:00
Ricardo Wurmus 5f6cd5a08e
gnu: r-ebarrays: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.68.0.

Change-Id: I204d9dc9f9d0cd62e2ca755f564067ef7985f7ed
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 673c680099
gnu: r-reactomepa: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.48.0.

Change-Id: I89d8101b4a3e410619c92b54de864194f12eb482
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 641602b9f9
gnu: r-graphite: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.50.0.

Change-Id: I76f3fe726fafc2437a9b6b7f00922e44265321cf
2024-05-08 12:53:36 +02:00
Ricardo Wurmus f20f659115
gnu: r-biobroom: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.36.0.

Change-Id: I7ce12a8b513c3a8de58c6c3d301f9949f0591a4e
2024-05-08 12:53:36 +02:00
Ricardo Wurmus bdf3ab2e3b
gnu: r-bioassayr: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.42.0.

Change-Id: I6735615a04c3e8943086aa0cffb03dadb723a654
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 83b7790cae
gnu: r-fmcsr: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-fmcsr): Update to 1.46.0.

Change-Id: Id233057e337e67a3e1edfaaf10ef5e273901436b
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 16d94b478d
gnu: r-chemminer: Update to 3.56.0.
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.56.0.

Change-Id: I04a8ec120f3c949ede3b6c38590d56455a1b32dc
2024-05-08 12:53:36 +02:00
Ricardo Wurmus cfc7f49dc5
gnu: r-chemmineob: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-chemmineob): Update to 1.42.0.

Change-Id: I6de9b4e325ed48535934a23a284ffc8f6b51c77a
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 0b85ec45ee
gnu: r-biggr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.40.0.

Change-Id: Ic28d925fef3901693c7d7769a494bccc8da5121b
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 25c010f0a7
gnu: r-hyperdraw: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.56.0.

Change-Id: I6279b34131142abcf14a8fd08b9faa1298013a85
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 9ec37522fd
gnu: r-hypergraph: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.76.0.

Change-Id: Id3778bdb1eb98ef71b6dbca207b1a96acf8e8e28
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 6006340e76
gnu: r-hybridmtest: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.48.0.

Change-Id: I89893ca526c27493f3966e3d777366024dc0fa91
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 3a7e38fd78
gnu: r-rsbml: Update to 2.62.0.
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.62.0.

Change-Id: I870e9d67c6f8123c53ec72c49d934613e25d9c77
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 1e2a028525
gnu: r-bifet: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.24.0.

Change-Id: I1737a7b834c834436791eb407c275f1b322d2c4c
2024-05-08 12:53:36 +02:00
Ricardo Wurmus c1d8f61898
gnu: r-bicare: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.62.0.

Change-Id: I9861a66178d503c45122a64a219086ef9cd8754e
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 4ce9c19290
gnu: r-bhc: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.56.0.

Change-Id: I0bba03639a3f1b301214051fd00b6f13de49f433
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 40a55d3f50
gnu: r-bgx: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.70.0.

Change-Id: Ibbbae41e23ab19f5cba7e2264fa2c2848a38a15f
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 841b39867d
gnu: r-acde: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-acde): Update to 1.34.0.

Change-Id: Iad20ebfe118270c0f878ac1d3c7c0cbe521ab359
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 31878ae8ec
gnu: r-acme: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-acme): Update to 2.60.0.

Change-Id: I3d29a5f5c4df1f77b5dc50415d537cde96e53437
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 98cae12891
gnu: r-acgh: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.82.0.

Change-Id: I2e354918b664aeb4f58aff1f7dd6c7ade652dcca
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 7619b4b16c
gnu: r-ace: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ace): Update to 1.22.0.

Change-Id: I05b8a0c1b400f2789691358a96653abd91761b57
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 1d14455948
gnu: r-universalmotif: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.22.0.

Change-Id: I8162abd88011435179e0c3ca41fe9d058f8f4522
2024-05-08 12:53:36 +02:00
Ricardo Wurmus 23d29d93dd
gnu: r-ucell: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.8.0.

Change-Id: I6c7867ce56a96e9320f050c9653ad558d9c9d102
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 30cdef4c82
gnu: r-variancepartition: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.34.0.

Change-Id: I9908a4020f5f17e015d9be1f54ea0383e5638759
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 31325acf18
gnu: r-variantfiltering: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.40.0.

Change-Id: I3e41dfc9a50657003144c8b767a5d424be571df2
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 2eb6a2fcf4
gnu: r-tilingarray: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.82.0.

Change-Id: I1353b206d83001b8965a949e55908a1306a8de7c
2024-05-08 12:53:35 +02:00
Ricardo Wurmus c7fe318467
gnu: r-wavcluster: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.38.0.

Change-Id: I285c6f42b2cde094e6c32e95b473c9540045866b
2024-05-08 12:53:35 +02:00
Ricardo Wurmus b3b6f34f35
gnu: r-bigmelon: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.30.0.
[native-inputs]: Remove r-knitr.

Change-Id: I5fd606d69b30ad6768cfd11594c6be66a9ae56fe
2024-05-08 12:53:35 +02:00
Ricardo Wurmus c7dfb85604
gnu: r-gdsfmt: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.40.0.

Change-Id: I972ee519a6c81bb88577b8ec86ca7a6ff6ab39d6
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 2ff8b4be6d
gnu: r-watermelon: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.10.0.

Change-Id: Iee6a26d982a87f586ad34625e8cd64d9df839fe1
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 45a4d44004
gnu: r-roc: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.80.0.

Change-Id: I4053fc2e0ab8298b95da11357c3543bdc4480272
2024-05-08 12:53:35 +02:00
Ricardo Wurmus c25e80f57c
gnu: r-genie3: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.26.0.

Change-Id: I7eb05930f49b4c44678e5069cda9083fa3b2d86a
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 15f55f8107
gnu: r-circrnaprofiler: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.18.0.

Change-Id: I5249ad323937706edb460e6f5dbc67f3b89aeea4
2024-05-08 12:53:35 +02:00
Ricardo Wurmus a675626580
gnu: r-cicero: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.22.0.

Change-Id: Iec08b05b328caf90a1a97b1dcec68eda81817f0a
2024-05-08 12:53:35 +02:00
Ricardo Wurmus b9dc1c39a9
gnu: r-chicago: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.32.0.

Change-Id: I5ae8e14628f6ba5babf4202a16cbf2a93d4812a0
2024-05-08 12:53:35 +02:00
Ricardo Wurmus b189f75029
gnu: r-rcistarget: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.24.0.
[propagated-inputs]: Add r-zoo.

Change-Id: Ifef3f1d3a3b0a6aa960d96d702c380c0b721707c
2024-05-08 12:53:35 +02:00
Ricardo Wurmus ed72f9bf20
gnu: r-depecher: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.20.0.
[propagated-inputs]: Add r-clusterr.

Change-Id: I438cfd508bb90af157a1b17a520d17374b5e1007
2024-05-08 12:53:35 +02:00
Ricardo Wurmus e258bc7be1
gnu: r-mixomics: Update to 6.28.0.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.28.0.

Change-Id: I878f0f648b15fc17a69c8b72aedf88c8d9b05f1d
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 7a3af14943
gnu: r-flowsom: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.12.0.

Change-Id: I0bd56b6915c9aed7ec5e86191f3a90ee5126bd79
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 3263b67123
gnu: r-opencyto: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.16.0.

Change-Id: I4b0121062299fac4831edaa096a1efdf70a8b7ea
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 4544b49e78
gnu: r-flowstats: Update to 4.16.0.
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.16.0.

Change-Id: I41a6906f6856b3bb7ecdcc9b5376213c80b4b55c
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 13652b01d2
gnu: r-flowworkspace: Update to 4.16.0.
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.16.0.

Change-Id: Ib561cb7faf49b258a9fba370d62b2d2d3babff4d
2024-05-08 12:53:35 +02:00
Ricardo Wurmus cf25a9b0f2
gnu: r-rprotobuflib: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.16.0.

Change-Id: I9ec03796c28a24ee683580c8be8236fc46ec4895
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 34880ea220
gnu: r-flowclust: Update to 3.42.0.
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.42.0.

Change-Id: Ibdffc56edbbc159b090302ef9491c176b93ad993
2024-05-08 12:53:35 +02:00
Ricardo Wurmus 1c80d54d79
gnu: r-flowviz: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.68.0.

Change-Id: I09f751cb47129b67903fb0b279a9c1b7b3555f7a
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 90cdcc1227
gnu: r-ggcyto: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.32.0.

Change-Id: I0a27617ec6dec5a41201ffdf4352d5d70946a990
2024-05-08 12:53:34 +02:00
Ricardo Wurmus af2f837060
gnu: r-ncdfflow: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.50.0.

Change-Id: I462cd25ccd4f4e96a21293d7d6bbfab68665b91c
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 45c2302159
gnu: r-flowmeans: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.64.0.

Change-Id: I0b99b3c3ebf292d9e7318a5fe33900be0634ccad
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 371f8a8339
gnu: r-flowcore: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.16.0.

Change-Id: I545b9e5453abc33a64a96a814fff5539daa59c3e
2024-05-08 12:53:34 +02:00
Ricardo Wurmus f3fca2f140
gnu: r-cytolib: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.16.0.

Change-Id: I66bc6871d7031229ee64765732cee003283b0d19
2024-05-08 12:53:34 +02:00
Ricardo Wurmus ebee8425fb
gnu: r-consensusclusterplus: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.68.0.

Change-Id: Ic061325418b63fed6ebaf60af1b53cd5720af9d4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus ded8565517
gnu: r-flowai: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.34.0.

Change-Id: I7e70ec8330092de08663200317032474b339cf7b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 2cdd8e24bf
gnu: r-flames: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-flames): Update to 1.10.0.
[propagated-inputs]: Add r-iranges, r-testthat, r-tibble, r-tidyselect, and r-txdbmaker.

Change-Id: I8cdc5c4370249f98079ffa83f16320f6f07f4650
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 4c63bceb85
gnu: r-rsubread: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.18.0.

Change-Id: Ia60b6fbefae10e668bf2d74e8e34e0af62286c3a
2024-05-08 12:53:34 +02:00
Ricardo Wurmus dc61187fc5
gnu: r-annotatr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.30.0.

Change-Id: Ia96de8988e70148774a002ed4a718c0e034d8470
2024-05-08 12:53:34 +02:00
Ricardo Wurmus b1272fe391
gnu: r-biosigner: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.32.0.

Change-Id: I1c9aba3807491c8cca78ecb9cfa6118ac829a83f
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 35c7407925
gnu: r-ropls: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.36.0.

Change-Id: I38f876b16f0757fb737e68dfdde414149325bf89
2024-05-08 12:53:34 +02:00
Ricardo Wurmus dd2f713ad2
gnu: r-multidataset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.32.0.

Change-Id: I11186aaf5e7824b622ee077386fde04e8cc6d4f8
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 542f2f6368
gnu: r-birewire: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.36.0.

Change-Id: I334dc128bbc21fb4b7561ffbd467f8fa8c5655bb
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 1e41a6c5a2
gnu: r-rqc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.38.0.

Change-Id: Ic0d16636a1d8b895f90488a53e5fb12e926aab96
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 41a7ae9ec3
gnu: r-quasr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.44.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I694b838314fd3b272c2b1e54462c01b8d7aa3db9
2024-05-08 12:53:34 +02:00
Ricardo Wurmus df7d5ec7c9
gnu: r-rhisat2: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.20.0.
[propagated-inputs]: Remove r-genomicfeatures; add r-txdbmaker.

Change-Id: I529eb7b14bed764ee4c99840261111aa464ebee4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus d7eb538f98
gnu: r-sgseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.38.0.

Change-Id: I0cff4621eab565b54ee90e400d716505ce3546a4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 5f6b7c1f6d
gnu: r-rbowtie: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.44.0.

Change-Id: If72dcf98d1e0807a662769f075783f5ab771ffa6
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 54bbc4fb55
gnu: r-iclusterplus: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.40.0.

Change-Id: I50d3ad0f0eb16f9c9c164e0123bf7aad6ca88e8b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 4130ff3f13
gnu: r-biocfilecache: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.12.0.

Change-Id: I43c6a01c27f5da53c1f92a4bb60e82021b503f24
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 56a0297e64
gnu: r-arrmnormalization: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.44.0.

Change-Id: I6764fb65b0180eff4cae6fed0ef34e6cd5ed455a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus f3e16115ba
gnu: r-progeny: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.26.0.

Change-Id: Ie4aa637d7579bf5f966aa48469ee9774b9be72eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 33270b8f5b
gnu: r-rbowtie2: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.10.0.

Change-Id: Ia0479b81f8fafec85967c3f040921265672da0bc
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 11fa847d63
gnu: r-zfpkm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.26.0.

Change-Id: Iaedb6614daf04de16a4a7f1ac5d62e2a886627db
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 9932e631b4
gnu: r-zinbwave: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.26.0.

Change-Id: I0ca075c1d53c8637f096c3d5d37b8af82e913d7a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 0612b39e4a
gnu: r-webbioc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.76.0.

Change-Id: I15d7018f71115f9105ab8bcb375d0085acda5e27
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 269d807b8b
gnu: r-widgettools: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.82.0.

Change-Id: Ifbf93eaef653f353c07198d3ab492db0d48c2a5d
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 772e6bd326
gnu: r-wiggleplotr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.28.0.

Change-Id: I812e2117c9fc082e665a2d257a14d6825bd2d983
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 4290e9c021
gnu: r-wrench: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.22.0.

Change-Id: Ic5b0bc0ca63f073b121041bb3779cd6440dadf22
2024-05-08 12:53:33 +02:00
Ricardo Wurmus ee4ba2b6d7
gnu: r-wppi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.12.0.

Change-Id: Ifb378d20553d74bfca3a3311e1139f8bccc79a8b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 649def40b8
gnu: r-xcms: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.0.
[propagated-inputs]: Remove r-multtest, r-plyr, r-rann, and r-robustbase; add r-jsonlite
and r-metabocoreutils.

Change-Id: I8ebcedc2c4b7fc073589c474de8a3ea52071d278
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 218d7093e5
gnu: r-massspecwavelet: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.70.0.

Change-Id: I0c19c85365065a5918c9236b8789798edbd69431
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3d31071378
gnu: r-roar: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.40.0.

Change-Id: I86b612f9a1d4715d22a30fd6dc3c564f53400bdb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus bf13473e7f
gnu: r-yarn: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.30.0.

Change-Id: Ibc82dc44f5f1b61b5adefaee2a16de1e159ff865
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e873fea1c1
gnu: r-quantro: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.38.0.

Change-Id: Ib9b1c373c0f7820c1944d49e6cdc9e0da30c752c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 67584d7d08
gnu: r-gcrma: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.76.0.

Change-Id: I224f243340bed970d72a8186d1f286d6e87a339b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus f6f96b1e5d
gnu: r-yapsa: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.30.0.

Change-Id: Iaf62b6d599e1a7e3cd3255877a9faf9c3d8b28c1
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78ca6efb7d
gnu: r-somaticsignatures: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.40.0.

Change-Id: I599c3b6a521a93dfa056d3ea42a27906360f4e92
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3458fcb7e0
gnu: r-gtrellis: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.36.0.

Change-Id: I3d0e77d8406b71adfcce754c0df5d82fbfa54d29
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e03461e6ab
gnu: r-yamss: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.30.0.

Change-Id: Id552217ad9a7a8273e38face0f016c410b6d2f25
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 1815859a6b
gnu: r-ebimage: Update to 4.46.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.46.0.

Change-Id: I18b62127bbd91d4c443a29a376506ffb95bdf74f
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 5b0edd7546
gnu: r-aucell: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.26.0.
[propagated-inputs]: Remove r-shiny.

Change-Id: I258ef1c0dbe0b3039cccc52b45bcd279e13448eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78668dc53f
gnu: r-allelicimbalance: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.42.0.

Change-Id: I2317a273e56cec77dfc2904a9f4b394954b4452c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 69baa29212
gnu: r-annotationtools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.78.0.

Change-Id: I03cfc05951d2385d129299857ab33dca14b9a09c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus af398adbe3
gnu: r-gofuncr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.24.0.

Change-Id: I3a9519ce281638bded1674efdcedee2792653edd
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f5d18100fe
gnu: r-atacseqqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.28.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: Ie8b4dfaeb8d2dace4222edcc453206c92038ccf3
2024-05-08 12:53:32 +02:00
Ricardo Wurmus c05269694a
gnu: r-genomicscores: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.16.0.

Change-Id: I5e16fcbdb0539d1549703c5613637a45dd394f19
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00
Ricardo Wurmus b367f31127
gnu: r-motifdb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.46.0.

Change-Id: I59ea594a6f60475130842a9f1184fc2347610ca4
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f51df09015
gnu: r-rgadem: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.52.0.

Change-Id: Icb79e5feac3f3d62236ddc2a11b69cdcd41e2adb
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 6681ecd758
gnu: r-bacon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.32.0.

Change-Id: I7205d0816ada2cd36892f8c60bc51745d8bb5b3c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 4bff48490a
gnu: r-abseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.22.0.

Change-Id: I0dccf1f24b03770773e7c4bf46a290091ecf4639
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 31a2196712
gnu: r-a4: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.52.0.

Change-Id: I9d5e462c3a85085e3d4e6a6e029facb15ecc75a8
2024-05-08 12:53:32 +02:00
Ricardo Wurmus e99c0cb450
gnu: r-a4base: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.52.0.

Change-Id: Ib453338c9f5120152401b63316875563dcfa8a6f
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 316a754148
gnu: r-a4reporting: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.52.0.

Change-Id: Ibbf221deb0fe3a25832e028d4428daca86638aae
2024-05-08 12:53:32 +02:00
Ricardo Wurmus fe2386ed67
gnu: r-a4preproc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.52.0.

Change-Id: If57e045b95a93fc6f3219563c14cb75d8b7def09
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f76b77319c
gnu: r-a4classif: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.52.0.

Change-Id: I80ac898550980c35b035fdb1d9830107eef81fbe
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 2de96b1cac
gnu: r-a4core: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.52.0.

Change-Id: Ic773aab10e8d25897b3d656ef97302ccc6c4e585
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 42069fa4f3
gnu: r-annaffy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.76.0.

Change-Id: Id4e02486fc59d4a1522d2a5ad4bdcb952656bb35
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 863e4f3fad
gnu: r-mlinterfaces: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.84.0.

Change-Id: I92ed0cc7b971ac04eac715d47031ce2dcee1fd65
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 38a5a2ee34
gnu: r-clusterexperiment: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.24.0.
[propagated-inputs]: Remove r-howmany.

Change-Id: Ibd0ea9c9ea87c3eddc86b6d7e13198575cc10418
2024-05-08 12:53:32 +02:00
Ricardo Wurmus d4eec5ad55
gnu: r-clusterprofiler: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.0.

Change-Id: If7fcff996d1c7341bb9e9faa0499dd259e894afc
2024-05-08 12:53:32 +02:00
Ricardo Wurmus de0f76d329
gnu: r-enrichplot: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.24.0.

Change-Id: Ide2c42c7df2f76742242df9191b51e56b4bcfc20
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a1f70d410a
gnu: r-enrichedheatmap: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.34.0.

Change-Id: I08fa610c96dd70460daf90f1a55adfe14119c12a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0806704ab3
gnu: r-dose: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.0.

Change-Id: I28254605db5026df5624ff6495dbeb294624a210
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 233ed5688e
gnu: r-fgsea: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.30.0.

Change-Id: Ib82a7b868f39594f0b2211a892596d638a5805d0
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 9c78531a2a
gnu: r-fcscan: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.18.0.

Change-Id: Iaa8325f526e06c25775421023d9f05ede76a54a3
2024-05-08 12:53:31 +02:00
Ricardo Wurmus e82b89a306
gnu: r-anota2seq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.26.0.

Change-Id: I9cfa5e25e1b0d7c1b0ae86b3d3d99c836579f3dc
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 3187bbde7b
gnu: r-anota: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.52.0.

Change-Id: I31b0c1073f1b00b3b5d37cf7660edfd0660e4510
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0e31943e5e
gnu: r-gosemsim: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.0.

Change-Id: I68681741553872d7928d8ef6388d9cecfb67c98f
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f8ac2124cb
gnu: r-heatplus: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.12.0.

Change-Id: Ib77fe8736bcd1a2e893de81afe77b66fd9a6d730
2024-05-08 12:53:31 +02:00
Ricardo Wurmus db03970daf
gnu: r-varianttools: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.46.0.

Change-Id: Icd4ad4878d0bcd47f14fae911adae373dbcabe90
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5fee991a00
gnu: r-tradeseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.18.0.

Change-Id: Ifb79112bed8aed760a3c100894f42554ed363e42
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 61bcb44396
gnu: r-ioniser: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.28.0.

Change-Id: Iae0b93ca195793240e5e5e9202685207868636f9
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5180609ccf
gnu: r-linnorm: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.28.0.

Change-Id: Iaead2fd1bb4044ceccb9192f4fefb014f9a6c08b
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 7c84c1d56b
gnu: r-lumi: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.56.0.

Change-Id: I99c34bf0c24123b0be4580b3d2211c55690fa248
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 2181f4cfb6
gnu: r-lefser: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.

Change-Id: Ife3994b119fe09ae9c1cf7b6604fd20aea59332a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 8ae01e0e56
gnu: r-methylumi: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.50.0.

Change-Id: I05ada9bb2d21c34f0d89b45efd3aca05c7e4bd55
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 16704ec29d
gnu: r-missmethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.38.0.

Change-Id: I525d9a3697b621b6f9e9eb09830950653ff571a4
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f71b4cc8c4
gnu: r-minfi: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.50.0.

Change-Id: I998622a5e1e7591819c18615c69784178710b168
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 339681b5c7
gnu: r-milor: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.0.0.
[propagated-inputs]: Add r-matrixgenerics, r-numderiv, r-rcpp, and r-rcpparmadillo.

Change-Id: I5d228959211ba4cdfbd6e8786f5fa801fdb38795
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 37ec72581f
gnu: r-microbiome: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.26.0.

Change-Id: I8ff4db42954af3dbf118f58838cae12c54998fa5
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 6040bcf1d5
gnu: r-mia: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.12.0.

Change-Id: I916224f840fe4f64b3307d09ca2bc00d18b2dcbf
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 32854c58f9
gnu: r-bumpymatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.12.0.

Change-Id: I87baf5a3ad2909cb927d363dd3a379487cc596fd
2024-05-08 12:53:31 +02:00
Ricardo Wurmus c990a72c67
gnu: r-bumphunter: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.46.0.

Change-Id: I171983cd2e64539fcd2d8f9a07421ff2418382f2
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f24b16fa41
gnu: r-siggenes: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.78.0.

Change-Id: I3b25af173de02555d4be229fb5f10ec03ee81298
2024-05-08 12:53:31 +02:00
Ricardo Wurmus cb38250d1d
gnu: r-illuminaio: Update to 0.46.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.46.0.

Change-Id: I5c7a518114f64ae05daec56467a30076313b1bb2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus f439044038
gnu: r-geoquery: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.72.0.

Change-Id: I8042f082559a8215013f18ebfbb44b019b40c8d6
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 9ec23ccb00
gnu: r-scone: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.28.0.

Change-Id: I94c44dd6323d6ae93e91ef6fadd12de66af4c3b0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 8fc95f20db
gnu: r-scdd: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.28.0.

Change-Id: I42916e2eb192bbb1f24d039eb07d20f066887c3e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus b0499b5e7f
gnu: r-noiseq: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.48.0.

Change-Id: I2e8160ba86fadcbe804b2690977e993e6ebdb433
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 986711225a
gnu: r-sangerseqr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I8b140d95d6de99a334372116e81c13b28816a5cb
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 617d87d764
gnu: r-monocle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.32.0.

Change-Id: I44260b60dc8faea338177ffbd190efa619be4bf0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 6f44c3769a
gnu: r-mast: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.30.0.

Change-Id: Ifed0788bf9e12d4b658493a345b66d66642cb508
2024-05-08 12:53:30 +02:00
Ricardo Wurmus bd79bfd298
gnu: r-batchelor: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.20.0.

Change-Id: I2b481fbf2d0f519782afb1338ff62b793f48b02b
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 851bebc7bd
gnu: r-residualmatrix: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.0.

Change-Id: I868b4a1c8543baf517eb7bdef1be52d854213749
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 427f9232e1
gnu: r-icobra: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.32.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I00098c395e56dd476d7eee1bd5f69e25b1311799
2024-05-08 12:53:30 +02:00