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Author SHA1 Message Date
Ricardo Wurmus 1c80d54d79
gnu: r-flowviz: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.68.0.

Change-Id: I09f751cb47129b67903fb0b279a9c1b7b3555f7a
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 90cdcc1227
gnu: r-ggcyto: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.32.0.

Change-Id: I0a27617ec6dec5a41201ffdf4352d5d70946a990
2024-05-08 12:53:34 +02:00
Ricardo Wurmus af2f837060
gnu: r-ncdfflow: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.50.0.

Change-Id: I462cd25ccd4f4e96a21293d7d6bbfab68665b91c
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 45c2302159
gnu: r-flowmeans: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.64.0.

Change-Id: I0b99b3c3ebf292d9e7318a5fe33900be0634ccad
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 371f8a8339
gnu: r-flowcore: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.16.0.

Change-Id: I545b9e5453abc33a64a96a814fff5539daa59c3e
2024-05-08 12:53:34 +02:00
Ricardo Wurmus f3fca2f140
gnu: r-cytolib: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.16.0.

Change-Id: I66bc6871d7031229ee64765732cee003283b0d19
2024-05-08 12:53:34 +02:00
Ricardo Wurmus ebee8425fb
gnu: r-consensusclusterplus: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.68.0.

Change-Id: Ic061325418b63fed6ebaf60af1b53cd5720af9d4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus ded8565517
gnu: r-flowai: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-flowai): Update to 1.34.0.

Change-Id: I7e70ec8330092de08663200317032474b339cf7b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 2cdd8e24bf
gnu: r-flames: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-flames): Update to 1.10.0.
[propagated-inputs]: Add r-iranges, r-testthat, r-tibble, r-tidyselect, and r-txdbmaker.

Change-Id: I8cdc5c4370249f98079ffa83f16320f6f07f4650
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 4c63bceb85
gnu: r-rsubread: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.18.0.

Change-Id: Ia60b6fbefae10e668bf2d74e8e34e0af62286c3a
2024-05-08 12:53:34 +02:00
Ricardo Wurmus dc61187fc5
gnu: r-annotatr: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.30.0.

Change-Id: Ia96de8988e70148774a002ed4a718c0e034d8470
2024-05-08 12:53:34 +02:00
Ricardo Wurmus b1272fe391
gnu: r-biosigner: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.32.0.

Change-Id: I1c9aba3807491c8cca78ecb9cfa6118ac829a83f
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 35c7407925
gnu: r-ropls: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.36.0.

Change-Id: I38f876b16f0757fb737e68dfdde414149325bf89
2024-05-08 12:53:34 +02:00
Ricardo Wurmus dd2f713ad2
gnu: r-multidataset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.32.0.

Change-Id: I11186aaf5e7824b622ee077386fde04e8cc6d4f8
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 542f2f6368
gnu: r-birewire: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.36.0.

Change-Id: I334dc128bbc21fb4b7561ffbd467f8fa8c5655bb
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 1e41a6c5a2
gnu: r-rqc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.38.0.

Change-Id: Ic0d16636a1d8b895f90488a53e5fb12e926aab96
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 41a7ae9ec3
gnu: r-quasr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.44.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I694b838314fd3b272c2b1e54462c01b8d7aa3db9
2024-05-08 12:53:34 +02:00
Ricardo Wurmus df7d5ec7c9
gnu: r-rhisat2: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.20.0.
[propagated-inputs]: Remove r-genomicfeatures; add r-txdbmaker.

Change-Id: I529eb7b14bed764ee4c99840261111aa464ebee4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus d7eb538f98
gnu: r-sgseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.38.0.

Change-Id: I0cff4621eab565b54ee90e400d716505ce3546a4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 5f6b7c1f6d
gnu: r-rbowtie: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.44.0.

Change-Id: If72dcf98d1e0807a662769f075783f5ab771ffa6
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 54bbc4fb55
gnu: r-iclusterplus: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.40.0.

Change-Id: I50d3ad0f0eb16f9c9c164e0123bf7aad6ca88e8b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 4130ff3f13
gnu: r-biocfilecache: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.12.0.

Change-Id: I43c6a01c27f5da53c1f92a4bb60e82021b503f24
2024-05-08 12:53:34 +02:00
Ricardo Wurmus 56a0297e64
gnu: r-arrmnormalization: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.44.0.

Change-Id: I6764fb65b0180eff4cae6fed0ef34e6cd5ed455a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus f3e16115ba
gnu: r-progeny: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.26.0.

Change-Id: Ie4aa637d7579bf5f966aa48469ee9774b9be72eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 33270b8f5b
gnu: r-rbowtie2: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.10.0.

Change-Id: Ia0479b81f8fafec85967c3f040921265672da0bc
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 11fa847d63
gnu: r-zfpkm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.26.0.

Change-Id: Iaedb6614daf04de16a4a7f1ac5d62e2a886627db
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 9932e631b4
gnu: r-zinbwave: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.26.0.

Change-Id: I0ca075c1d53c8637f096c3d5d37b8af82e913d7a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 0612b39e4a
gnu: r-webbioc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.76.0.

Change-Id: I15d7018f71115f9105ab8bcb375d0085acda5e27
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 269d807b8b
gnu: r-widgettools: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.82.0.

Change-Id: Ifbf93eaef653f353c07198d3ab492db0d48c2a5d
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 772e6bd326
gnu: r-wiggleplotr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.28.0.

Change-Id: I812e2117c9fc082e665a2d257a14d6825bd2d983
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 4290e9c021
gnu: r-wrench: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.22.0.

Change-Id: Ic5b0bc0ca63f073b121041bb3779cd6440dadf22
2024-05-08 12:53:33 +02:00
Ricardo Wurmus ee4ba2b6d7
gnu: r-wppi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.12.0.

Change-Id: Ifb378d20553d74bfca3a3311e1139f8bccc79a8b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 649def40b8
gnu: r-xcms: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.0.
[propagated-inputs]: Remove r-multtest, r-plyr, r-rann, and r-robustbase; add r-jsonlite
and r-metabocoreutils.

Change-Id: I8ebcedc2c4b7fc073589c474de8a3ea52071d278
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 218d7093e5
gnu: r-massspecwavelet: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.70.0.

Change-Id: I0c19c85365065a5918c9236b8789798edbd69431
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3d31071378
gnu: r-roar: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.40.0.

Change-Id: I86b612f9a1d4715d22a30fd6dc3c564f53400bdb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus bf13473e7f
gnu: r-yarn: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.30.0.

Change-Id: Ibc82dc44f5f1b61b5adefaee2a16de1e159ff865
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e873fea1c1
gnu: r-quantro: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.38.0.

Change-Id: Ib9b1c373c0f7820c1944d49e6cdc9e0da30c752c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 67584d7d08
gnu: r-gcrma: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.76.0.

Change-Id: I224f243340bed970d72a8186d1f286d6e87a339b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus f6f96b1e5d
gnu: r-yapsa: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.30.0.

Change-Id: Iaf62b6d599e1a7e3cd3255877a9faf9c3d8b28c1
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78ca6efb7d
gnu: r-somaticsignatures: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.40.0.

Change-Id: I599c3b6a521a93dfa056d3ea42a27906360f4e92
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 3458fcb7e0
gnu: r-gtrellis: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.36.0.

Change-Id: I3d0e77d8406b71adfcce754c0df5d82fbfa54d29
2024-05-08 12:53:33 +02:00
Ricardo Wurmus e03461e6ab
gnu: r-yamss: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.30.0.

Change-Id: Id552217ad9a7a8273e38face0f016c410b6d2f25
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 1815859a6b
gnu: r-ebimage: Update to 4.46.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.46.0.

Change-Id: I18b62127bbd91d4c443a29a376506ffb95bdf74f
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 5b0edd7546
gnu: r-aucell: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.26.0.
[propagated-inputs]: Remove r-shiny.

Change-Id: I258ef1c0dbe0b3039cccc52b45bcd279e13448eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 78668dc53f
gnu: r-allelicimbalance: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.42.0.

Change-Id: I2317a273e56cec77dfc2904a9f4b394954b4452c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus 69baa29212
gnu: r-annotationtools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.78.0.

Change-Id: I03cfc05951d2385d129299857ab33dca14b9a09c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus af398adbe3
gnu: r-gofuncr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.24.0.

Change-Id: I3a9519ce281638bded1674efdcedee2792653edd
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f5d18100fe
gnu: r-atacseqqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.28.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: Ie8b4dfaeb8d2dace4222edcc453206c92038ccf3
2024-05-08 12:53:32 +02:00
Ricardo Wurmus c05269694a
gnu: r-genomicscores: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.16.0.

Change-Id: I5e16fcbdb0539d1549703c5613637a45dd394f19
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00
Ricardo Wurmus b367f31127
gnu: r-motifdb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.46.0.

Change-Id: I59ea594a6f60475130842a9f1184fc2347610ca4
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f51df09015
gnu: r-rgadem: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.52.0.

Change-Id: Icb79e5feac3f3d62236ddc2a11b69cdcd41e2adb
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 6681ecd758
gnu: r-bacon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.32.0.

Change-Id: I7205d0816ada2cd36892f8c60bc51745d8bb5b3c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 4bff48490a
gnu: r-abseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.22.0.

Change-Id: I0dccf1f24b03770773e7c4bf46a290091ecf4639
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 31a2196712
gnu: r-a4: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.52.0.

Change-Id: I9d5e462c3a85085e3d4e6a6e029facb15ecc75a8
2024-05-08 12:53:32 +02:00
Ricardo Wurmus e99c0cb450
gnu: r-a4base: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.52.0.

Change-Id: Ib453338c9f5120152401b63316875563dcfa8a6f
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 316a754148
gnu: r-a4reporting: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.52.0.

Change-Id: Ibbf221deb0fe3a25832e028d4428daca86638aae
2024-05-08 12:53:32 +02:00
Ricardo Wurmus fe2386ed67
gnu: r-a4preproc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.52.0.

Change-Id: If57e045b95a93fc6f3219563c14cb75d8b7def09
2024-05-08 12:53:32 +02:00
Ricardo Wurmus f76b77319c
gnu: r-a4classif: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.52.0.

Change-Id: I80ac898550980c35b035fdb1d9830107eef81fbe
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 2de96b1cac
gnu: r-a4core: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.52.0.

Change-Id: Ic773aab10e8d25897b3d656ef97302ccc6c4e585
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 42069fa4f3
gnu: r-annaffy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.76.0.

Change-Id: Id4e02486fc59d4a1522d2a5ad4bdcb952656bb35
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 863e4f3fad
gnu: r-mlinterfaces: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.84.0.

Change-Id: I92ed0cc7b971ac04eac715d47031ce2dcee1fd65
2024-05-08 12:53:32 +02:00
Ricardo Wurmus 38a5a2ee34
gnu: r-clusterexperiment: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.24.0.
[propagated-inputs]: Remove r-howmany.

Change-Id: Ibd0ea9c9ea87c3eddc86b6d7e13198575cc10418
2024-05-08 12:53:32 +02:00
Ricardo Wurmus d4eec5ad55
gnu: r-clusterprofiler: Update to 4.12.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.12.0.

Change-Id: If7fcff996d1c7341bb9e9faa0499dd259e894afc
2024-05-08 12:53:32 +02:00
Ricardo Wurmus de0f76d329
gnu: r-enrichplot: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.24.0.

Change-Id: Ide2c42c7df2f76742242df9191b51e56b4bcfc20
2024-05-08 12:53:32 +02:00
Ricardo Wurmus a1f70d410a
gnu: r-enrichedheatmap: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.34.0.

Change-Id: I08fa610c96dd70460daf90f1a55adfe14119c12a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0806704ab3
gnu: r-dose: Update to 3.30.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.0.

Change-Id: I28254605db5026df5624ff6495dbeb294624a210
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 233ed5688e
gnu: r-fgsea: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.30.0.

Change-Id: Ib82a7b868f39594f0b2211a892596d638a5805d0
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 9c78531a2a
gnu: r-fcscan: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.18.0.

Change-Id: Iaa8325f526e06c25775421023d9f05ede76a54a3
2024-05-08 12:53:31 +02:00
Ricardo Wurmus e82b89a306
gnu: r-anota2seq: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.26.0.

Change-Id: I9cfa5e25e1b0d7c1b0ae86b3d3d99c836579f3dc
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 3187bbde7b
gnu: r-anota: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.52.0.

Change-Id: I31b0c1073f1b00b3b5d37cf7660edfd0660e4510
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 0e31943e5e
gnu: r-gosemsim: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.30.0.

Change-Id: I68681741553872d7928d8ef6388d9cecfb67c98f
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f8ac2124cb
gnu: r-heatplus: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.12.0.

Change-Id: Ib77fe8736bcd1a2e893de81afe77b66fd9a6d730
2024-05-08 12:53:31 +02:00
Ricardo Wurmus db03970daf
gnu: r-varianttools: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.46.0.

Change-Id: Icd4ad4878d0bcd47f14fae911adae373dbcabe90
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5fee991a00
gnu: r-tradeseq: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.18.0.

Change-Id: Ifb79112bed8aed760a3c100894f42554ed363e42
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 61bcb44396
gnu: r-ioniser: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.28.0.

Change-Id: Iae0b93ca195793240e5e5e9202685207868636f9
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 5180609ccf
gnu: r-linnorm: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.28.0.

Change-Id: Iaead2fd1bb4044ceccb9192f4fefb014f9a6c08b
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 7c84c1d56b
gnu: r-lumi: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.56.0.

Change-Id: I99c34bf0c24123b0be4580b3d2211c55690fa248
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 2181f4cfb6
gnu: r-lefser: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.

Change-Id: Ife3994b119fe09ae9c1cf7b6604fd20aea59332a
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 8ae01e0e56
gnu: r-methylumi: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.50.0.

Change-Id: I05ada9bb2d21c34f0d89b45efd3aca05c7e4bd55
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 16704ec29d
gnu: r-missmethyl: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.38.0.

Change-Id: I525d9a3697b621b6f9e9eb09830950653ff571a4
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f71b4cc8c4
gnu: r-minfi: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.50.0.

Change-Id: I998622a5e1e7591819c18615c69784178710b168
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 339681b5c7
gnu: r-milor: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 2.0.0.
[propagated-inputs]: Add r-matrixgenerics, r-numderiv, r-rcpp, and r-rcpparmadillo.

Change-Id: I5d228959211ba4cdfbd6e8786f5fa801fdb38795
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 37ec72581f
gnu: r-microbiome: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.26.0.

Change-Id: I8ff4db42954af3dbf118f58838cae12c54998fa5
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 6040bcf1d5
gnu: r-mia: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.12.0.

Change-Id: I916224f840fe4f64b3307d09ca2bc00d18b2dcbf
2024-05-08 12:53:31 +02:00
Ricardo Wurmus 32854c58f9
gnu: r-bumpymatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.12.0.

Change-Id: I87baf5a3ad2909cb927d363dd3a379487cc596fd
2024-05-08 12:53:31 +02:00
Ricardo Wurmus c990a72c67
gnu: r-bumphunter: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.46.0.

Change-Id: I171983cd2e64539fcd2d8f9a07421ff2418382f2
2024-05-08 12:53:31 +02:00
Ricardo Wurmus f24b16fa41
gnu: r-siggenes: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.78.0.

Change-Id: I3b25af173de02555d4be229fb5f10ec03ee81298
2024-05-08 12:53:31 +02:00
Ricardo Wurmus cb38250d1d
gnu: r-illuminaio: Update to 0.46.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.46.0.

Change-Id: I5c7a518114f64ae05daec56467a30076313b1bb2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus f439044038
gnu: r-geoquery: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.72.0.

Change-Id: I8042f082559a8215013f18ebfbb44b019b40c8d6
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 9ec23ccb00
gnu: r-scone: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.28.0.

Change-Id: I94c44dd6323d6ae93e91ef6fadd12de66af4c3b0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 8fc95f20db
gnu: r-scdd: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.28.0.

Change-Id: I42916e2eb192bbb1f24d039eb07d20f066887c3e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus b0499b5e7f
gnu: r-noiseq: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.48.0.

Change-Id: I2e8160ba86fadcbe804b2690977e993e6ebdb433
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 986711225a
gnu: r-sangerseqr: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.40.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I8b140d95d6de99a334372116e81c13b28816a5cb
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 617d87d764
gnu: r-monocle: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.32.0.

Change-Id: I44260b60dc8faea338177ffbd190efa619be4bf0
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 6f44c3769a
gnu: r-mast: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.30.0.

Change-Id: Ifed0788bf9e12d4b658493a345b66d66642cb508
2024-05-08 12:53:30 +02:00
Ricardo Wurmus bd79bfd298
gnu: r-batchelor: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.20.0.

Change-Id: I2b481fbf2d0f519782afb1338ff62b793f48b02b
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 851bebc7bd
gnu: r-residualmatrix: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.0.

Change-Id: I868b4a1c8543baf517eb7bdef1be52d854213749
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 427f9232e1
gnu: r-icobra: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.32.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I00098c395e56dd476d7eee1bd5f69e25b1311799
2024-05-08 12:53:30 +02:00
Ricardo Wurmus fcfa770494
gnu: r-ihw: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.32.0.

Change-Id: Id002b977b421c761f0b5776700283e71f937a04e
2024-05-08 12:53:30 +02:00
Ricardo Wurmus ce4f5ee13f
gnu: r-lpsymphony: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.32.0.

Change-Id: Ia032fb628cc3a70176f5b34c4d448f0993466200
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 12d37b0c57
gnu: r-karyoploter: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.30.0.

Change-Id: Ie63e8e9a5945d99354d6f98248cddb4fcb0d9655
2024-05-08 12:53:30 +02:00
Ricardo Wurmus bf52c2a0e9
gnu: r-ebseq: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.2.0.

Change-Id: Id136b108abe6d3ee372d08f4a6d6e03f7c285c71
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 81d3077cc7
gnu: r-dnacopy: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.78.0.

Change-Id: Id303aec39ec0b2f2d532267301151fea2e9bf4c7
2024-05-08 12:53:30 +02:00
Ricardo Wurmus fc71927c70
gnu: r-chipexoqual: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.28.0.

Change-Id: I0cf774225c8cf595cb28e8775ba16eadc2604d63
2024-05-08 12:53:30 +02:00
Ricardo Wurmus f223fd6e70
gnu: r-destiny: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.18.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I94f4f6b317b300f3abb91520cfece0791c45bba2
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 3a80eb8171
gnu: r-biocsingular: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.20.0.

Change-Id: If23353503d25e3e9b9333b55092360c4dcd02931
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 0f9edc8535
gnu: r-metapod: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.12.0.

Change-Id: I82e4487b9495f94b224fac47d0b86bfe49de7438
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 2d5e861383
gnu: r-ggtree: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.12.0.

Change-Id: Id0230ecfd45c9a02ef1076a603409512ae9cab04
2024-05-08 12:53:30 +02:00
Ricardo Wurmus 0578399109
gnu: r-treesummarizedexperiment: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): Update to 2.12.0.

Change-Id: I3e541e10d3331a79c1b5eed6df49b07ad31694fd
2024-05-08 12:53:30 +02:00
Ricardo Wurmus a5a48afd52
gnu: r-treeio: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.28.0.
[propagated-inputs]: Add r-yulab-utils.

Change-Id: Icbb80a1fb2a5f1b1a9c0f38fdd92a9af22fafa58
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 5a7511551c
gnu: r-scaledmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.12.0.

Change-Id: I886c3f2c39a9385a6a1546fd5aacb14b2e744c69
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 6c9dbaa1f0
gnu: r-biocneighbors: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.22.0.

Change-Id: Idef84694ed38033d5aa211a51c83e96d61e000c1
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 6d03ea0bf3
gnu: r-ruvseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.38.0.

Change-Id: I20cd79c28c77979213dde9e298b78bd200686bc5
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 4e1e996469
gnu: r-dnabarcodes: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.34.0.

Change-Id: I19ec9fa1eb4d2a205ce0ef3f0925e42db11fe0d7
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 83bbfba994
gnu: r-inspect: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.34.0.

Change-Id: I4e5ba976f557f06bbfd0a2c4834a18a9f5c39641
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 5452fb5042
gnu: r-plyranges: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-plyranges): Update to 1.24.0.

Change-Id: I99a8d90d6286e1d1fc3ec2ee02fa11d327bd49d0
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 48e8e177c4
gnu: r-plgem: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.76.0.

Change-Id: Ie827507d649f0eb5e9ccf7ed7c7ae6836284262f
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 7f22e3693b
gnu: r-rots: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.32.0.

Change-Id: Iff0ed11cedadfc65e20cc5d39a4262e7974de2db
2024-05-08 12:53:29 +02:00
Ricardo Wurmus a4edee3e48
gnu: r-glmgampoi: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.16.0.

Change-Id: I2bf8dfb35cb318b146cbe5ff0746fff50cff5245
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 3456d23e24
gnu: r-glimma: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.14.0.

Change-Id: I6c6d182612f065abca75dfc34db0c0a330d1c673
2024-05-08 12:53:29 +02:00
Ricardo Wurmus d3bef5339c
gnu: r-ctc: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.78.0.

Change-Id: I80cc97542cd21358b0037103d237b7beaf369a41
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 8938e52e40
gnu: r-genomicinteractions: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.38.0.

Change-Id: Ib21a06dcd29cb365ac892a4acddc3d4ac849a82a
2024-05-08 12:53:29 +02:00
Ricardo Wurmus b1f4794ea4
gnu: r-interactionset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.32.0.

Change-Id: Ic463139eb4d1b528b945c82854ea6d170ff6d5d0
2024-05-08 12:53:29 +02:00
Ricardo Wurmus a1197f2e69
gnu: r-riboseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.38.0.
[propagated-inputs]: Add r-s4vectors.

Change-Id: I3db5790e20901be4e17e80d17e4e32a4185d4e06
2024-05-08 12:53:29 +02:00
Ricardo Wurmus a1e7f331a2
gnu: r-riboprofiling: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.34.0.

Change-Id: I93cf780c9e31684f976c5b4d9a5e207d3f3fcd4d
2024-05-08 12:53:29 +02:00
Ricardo Wurmus ee42719f25
gnu: r-chipcomp: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.34.0.

Change-Id: Ib25d9e41d6378d60328a8461f379a19d87615cd5
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 2eac018b3b
gnu: r-bayseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.38.0.

Change-Id: I06fe6bb886c0a8c52f96ae021987e221a4cfd73d
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 6cf5506514
gnu: r-qdnaseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.40.0.

Change-Id: I15030171a4e2eafa324131fe29800c3004b1c3b3
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 10cba6e840
gnu: r-cghcall: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.66.0.

Change-Id: I14bced655bea4c34d9d97ffafdf7435c5bab9d91
2024-05-08 12:53:29 +02:00
Ricardo Wurmus edabbba1a5
gnu: r-cghbase: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.64.0.

Change-Id: I0a2dc81941c373e7f8d4ecefc196aadf5a2375cd
2024-05-08 12:53:29 +02:00
Ricardo Wurmus c4e5ed070a
gnu: r-marray: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.82.0.

Change-Id: I5e89a79a53539ffbc503ba08f3f14b4baba14c97
2024-05-08 12:53:29 +02:00
Ricardo Wurmus 8f4d63e09b
gnu: r-matrixgenerics: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.16.0.

Change-Id: I123ac9451ff9a71027c3d2ebd6cb74baf2a2b70e
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 26bcd09be5
gnu: r-chippeakanno: Update to 3.38.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.38.0.
[propagated-inputs]: Add r-data-table, r-pwalign, r-scales, r-stringr, r-tibble, r-tidyr,
and r-universalmotif.

Change-Id: If1a8bd01cf741f7eaca1a70abbcf438ce09967f3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus e8978ca774
gnu: r-pepsnmr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.22.0.

Change-Id: I4a24be4f4e27f597abcdf2bc12038148ce944725
2024-05-08 12:53:28 +02:00
Ricardo Wurmus be96c69430
gnu: r-ggtreeextra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-ggtreeextra): Update to 1.14.0.

Change-Id: I2eae5f5d3bc4e3aeb4f4a5dfc9d62382c8eced3a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus b85c1852b6
gnu: r-graph: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.82.0.

Change-Id: Ia146b27aff043a4726fe740ca525e9b54fe14d6d
2024-05-08 12:53:28 +02:00
Ricardo Wurmus a6b86197f1
gnu: r-multtest: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.60.0.

Change-Id: I62f4002526c565e117947ff790e217012e55aac3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 4d6e9dca31
gnu: r-multibac: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-multibac): Update to 1.14.0.

Change-Id: Ia10f5477a6dc12d43577b80c66140fc8f3954da4
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 962f125a58
gnu: r-mbkmeans: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.20.0.

Change-Id: Ia6d03cd59abdbe1fe407ccccc658d2b88c8ace0c
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 0e592e5d44
gnu: r-mbecs: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mbecs): Update to 1.8.0.

Change-Id: I4bda3ad7f6e1635c51effed99b079bac494f3e0b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus f48ef2b2be
gnu: r-diffbind: Update to 3.14.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.14.0.

Change-Id: Ibc1d511db31e2d3db6c44d1fcd992ad291a57c7e
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 65d1491d69
gnu: r-greylistchip: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.36.0.

Change-Id: If072acdcf878e86c95f1f66a13b899cfc9adc2b7
2024-05-08 12:53:28 +02:00
Ricardo Wurmus aaac3ebdc8
gnu: r-apeglm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.26.0.

Change-Id: I6f6770c0f45287baae74300422795c40a7fb9485
2024-05-08 12:53:28 +02:00
Ricardo Wurmus aa265d655b
gnu: r-apcomplex: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-apcomplex): Update to 2.70.0.

Change-Id: Ic8641d7e20d1db3fb101807e27eb908d3da47d7b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 8db1cd28aa
gnu: r-qvalue: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.36.0.

Change-Id: I571e437c7f3d16d616ef45a9b89dd8a21b3f4951
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 63f3f86f03
gnu: r-quantsmooth: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.70.0.

Change-Id: I030e55293e73ab143dc542e9de0f5b33acc1ce11
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 1ca2afaef6
gnu: r-qfeatures: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.14.0.
[propagated-inputs]: Add r-tidyr and r-tidyselect.

Change-Id: I3adff30be5528c7a14f8895baaeadbac9a403630
2024-05-08 12:53:28 +02:00
Ricardo Wurmus e9dab24f53
gnu: r-oligo: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.68.0.

Change-Id: I13c81497f607deaea44d258513fe797147b33d1b
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 21c3f68c29
gnu: r-oligoclasses: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.66.0.

Change-Id: Ic0ab82b4e1e6e400d6b78bc1fc743b72ffe8fb5a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 2832730fce
gnu: r-geneplotter: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.82.0.

Change-Id: I0fe3974fc5db878ca316eec339e29d669d80cfa3
2024-05-08 12:53:28 +02:00
Ricardo Wurmus b877e13cb0
gnu: r-zellkonverter: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.14.0.

Change-Id: Id3ae955b285c16c11f3e8ffb13d46f73c75c8d28
2024-05-08 12:53:28 +02:00
Ricardo Wurmus c0f07c73fd
gnu: r-zlibbioc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.50.0.

Change-Id: I9328dc1aac9f1a9818eb2d3db535443357fbdb96
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 61ff644dbc
gnu: r-xvector: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.44.0.

Change-Id: I0fc1b77f6713dd21c880a8dc3560538f3dd64f2a
2024-05-08 12:53:28 +02:00
Ricardo Wurmus 09d56eba55
gnu: r-xmapbridge: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.62.0.

Change-Id: I47d9cd20a6a11ecd83d51737766ea528f27cea5b
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e883e06151
gnu: r-xina: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-xina): Update to 1.22.0.

Change-Id: I6c6678b36e138132be262a79fd026e5c3b5a8025
2024-05-08 12:53:27 +02:00
Ricardo Wurmus b1d1af4ae6
gnu: r-vsn: Update to 3.72.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.72.0.

Change-Id: I0ffe22d61eb7e8395873701dc993e1bb4da01ea0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 017232eb6c
gnu: r-variantannotation: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.50.0.

Change-Id: I9cc7974bbf682e85b8813f10e5351bd97c6541fe
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 6e8ce08d51
gnu: r-tximport: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.32.0.

Change-Id: Ie592907eda6aeaecedacfab5ab46b6083c079c10
2024-05-08 12:53:27 +02:00
Ricardo Wurmus bf1b1e3a1c
gnu: r-topgo: Update to 2.56.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.56.0.

Change-Id: I092b5d3592e05fef80b04866fac8a40ccea258fd
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 16a794f8ed
gnu: r-systempiper: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.10.0.

Change-Id: I5a58172e4a622d132430a6332d95c1547f60a178
2024-05-08 12:53:27 +02:00
Ricardo Wurmus d739f83b6b
gnu: r-sva: Update to 3.52.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.52.0.

Change-Id: Ib4243cc0d61a98703e2abf35fafa761a1c465f21
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 118aff2e0e
gnu: r-survcomp: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.54.0.

Change-Id: I4d4e7523d555484d1fef46622d968c4ea4206fa7
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 65973abaf1
gnu: r-summarizedexperiment: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.34.0.

Change-Id: Ia321ab98a3ef414687556e5c81f82891fce8ff27
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e6522075ec
gnu: r-structuralvariantannotation: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.20.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If835644b8f25b491953270d4de43bc52295c6a1d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 7f5b5e9b11
gnu: r-structstrings: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-structstrings): Update to 1.20.0.

Change-Id: Idd71d968a31bb85fac334a635c0084bfadb569c3
2024-05-08 12:53:27 +02:00
Ricardo Wurmus ba92e738d3
gnu: r-stringdb: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.0.

Change-Id: I8ab6ff63f94f4d6e9c8b9bfa7b8017030a55bfef
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e13e3edd17
gnu: r-stager: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-stager): Update to 1.26.0.

Change-Id: Ie5eab32c083443149be319d92d8025aea9b00fb4
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 11d71e1831
gnu: r-spectra: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.0.

Change-Id: I473834e66f7d6a2721a71bafe17b1b3797f469c0
2024-05-08 12:53:27 +02:00
Ricardo Wurmus a23a4ca88e
gnu: r-slingshot: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.12.0.

Change-Id: Ic7cdd2989054686a0e204c1a7c5f824241395506
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 30ddcaad69
gnu: r-scds: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-scds): Update to 1.20.0.

Change-Id: I1b2a63d6110e84f2afa0814e63d7d51ce7b60cf9
2024-05-08 12:53:27 +02:00
Ricardo Wurmus f8940f24c6
gnu: r-trnadbimport: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trnadbimport): Update to 1.22.0.

Change-Id: I0414b8517d6fb685b031b0f4db9a1d12887f1b96
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 0f1d300f88
gnu: r-trna: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-trna): Update to 1.22.0.

Change-Id: I8963719a1115e1c5ee4994e41a1aa54bc22fcaad
2024-05-08 12:53:27 +02:00
Ricardo Wurmus cda28c3a25
gnu: r-trajectoryutils: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.12.0.

Change-Id: I34fe4ddcfefbc5e630b980a1f5efa95651b57d4d
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 13510c9f98
gnu: r-transcriptr: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.32.0.

Change-Id: Ia667543961c1512ada20fe9c52e3e7ed09d0f65e
2024-05-08 12:53:27 +02:00
Ricardo Wurmus 014cb61aec
gnu: r-trackviewer: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.40.0.
[propagated-inputs]: Remove r-graph and r-rgraphviz; add r-igraph and r-txdbmaker.

Change-Id: I90fbb82ff3261d78d5a34398319032f18068fe6a
2024-05-08 12:53:27 +02:00
Ricardo Wurmus e5db1eda48
gnu: r-toast: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-toast): Update to 1.18.0.

Change-Id: Id9859f9e2cdb7ca883851dfe6898d1303a352a38
2024-05-08 12:53:27 +02:00
Ricardo Wurmus aba6649da3
gnu: r-tkwidgets: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.82.0.

Change-Id: I8651a8b1266c181aac615895c9f39380f0351057
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 643ef0df61
gnu: r-tcgautils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.24.0.

Change-Id: Ie461dd5c2e2799c6cd32cc5e88a13337bcf82096
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d77e1f3c10
gnu: r-singscore: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.24.0.

Change-Id: I8e7b85d05a7e9f7d4e724dc5de30cdab5dc23e57
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 6f901f6078
gnu: r-simplifyenrichment: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.14.0.

Change-Id: Ie857137bb1320f3720b005a3f85b9af5b91f921e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 1140cfd70c
gnu: r-sictools: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-sictools): Update to 1.34.0.

Change-Id: I99b7c71edd1eb82ee8b2430de49559713b7b190a
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 04949bab4a
gnu: r-shortread: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.62.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If2d4d238f239f2acda2f8bffc29851dbfa5e6242
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 3919266295
gnu: r-shinymethyl: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.40.0.

Change-Id: Ifb3c81587b465500bc09e05da2d3dc8f0ca360b5
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 19da768a9f
gnu: r-sesame: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.0.

Change-Id: I0efac0bf86ee98a8e75fc27c4deebeeb3b285501
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 18b93942a1
gnu: r-seqpattern: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.36.0.

Change-Id: I34fdeb5b2c758a61d3c51b661c3f368962041a7b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 28ec187b57
gnu: r-seqlogo: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.70.0.

Change-Id: I201297ab8f83e29de02014ec4e714ea9660a9f7d
2024-05-08 12:53:26 +02:00
Ricardo Wurmus c85aa7b104
gnu: r-seqarray: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.44.0.

Change-Id: I056ebc6080d3a2d82c2f1a2ffcc45d5c6bfdbb9e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus a1b6df6cf7
gnu: r-scry: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-scry): Update to 1.16.0.

Change-Id: I47c4da2763a994a1763eca403597b41b4514852e
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 5ac1127f4a
gnu: r-scrnaseq: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.18.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-sce, r-dbi,
r-delayedarray, r-gypsum, r-jsonlite, r-matrix, r-rsqlite, and
r-sparsearray.

Change-Id: Ib72ccf01386df1bc464bea2922e4539968b97805
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d4094eaef4
gnu: r-screpertoire: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.0.0.
[propagated-inputs]: Remove r-doparallel, r-powertcr, and r-vegan; add r-cubature,
r-evmix, r-ggdendro, r-hash, r-inext, r-quantreg, r-rcpp, r-rjson,
r-s4vectors, r-truncdist, and r-vgam.

Change-Id: I0d2647f9d2cee66503e0d76f4ff913fd5662971c
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 0ddc2665e0
gnu: r-scmap: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.26.0.

Change-Id: I8ca259c16274a11e5767e3d652394144418cb91b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 23dd82f6d0
gnu: r-scdblfinder: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.18.0.

Change-Id: Id0180b229c58d25c67ab45725714a07ced6a4f69
2024-05-08 12:53:26 +02:00
Ricardo Wurmus b8959272c5
gnu: r-scannotatr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.10.0.

Change-Id: I3f13f54e33f1d615ef234853c425894239031399
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 51093471ce
gnu: r-saturn: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.12.0.

Change-Id: I187d36aa6b0a29a12c738e4e1c36c12905d3bbd9
2024-05-08 12:53:26 +02:00
Ricardo Wurmus dae9e19df4
gnu: r-rtracklayer: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.64.0.
[inputs]: Add curl.
[propagated-inputs]: Remove r-rcurl; add r-curl and r-httr.

Change-Id: I1d5f33e9feb54fa0ce6e8d7b98fca461e8480c06
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 43cced246b
gnu: r-rtcgatoolbox: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.34.0.

Change-Id: I4d1c6d5f1d6dffe4cd5acf074c86eae1e008a44b
2024-05-08 12:53:26 +02:00
Ricardo Wurmus 92ed002d7f
gnu: r-rtcga: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.34.0.

Change-Id: I84fa90b4e055fbce4415f25d9638b7579c73eda8
2024-05-08 12:53:26 +02:00
Ricardo Wurmus d27d69bd4b
gnu: r-rsamtools: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.20.0.

Change-Id: I3ac6535dc9dec0530df1ff5f5552539bd7345c2a
2024-05-08 12:53:26 +02:00