400c046942
gnu: r-biocviews: Update to 1.66.3.
...
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.3.
2023-03-15 17:40:42 +01:00
b21a06353a
gnu: r-bioccheck: Update to 1.34.3.
...
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.3.
2023-03-15 17:40:42 +01:00
2731b5a58c
gnu: r-variancepartition: Update to 1.28.7.
...
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.7.
2023-03-15 17:40:42 +01:00
5d800ec66b
gnu: r-circrnaprofiler: Update to 1.12.2.
...
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.12.2.
2023-03-15 17:40:42 +01:00
78fbd6f666
gnu: r-cicero: Update to 1.16.2.
...
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.16.2.
2023-03-15 17:40:42 +01:00
20300ca9c1
gnu: r-rsubread: Update to 2.12.3.
...
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.3.
2023-03-15 17:40:42 +01:00
9ee316a7e4
gnu: r-iclusterplus: Update to 1.34.3.
...
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.3.
2023-03-15 17:40:42 +01:00
01911fa0a4
gnu: r-rbowtie2: Update to 2.4.2.
...
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.4.2.
2023-03-15 17:40:42 +01:00
ab6909adf0
gnu: r-motifbreakr: Update to 2.12.3.
...
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.12.3.
2023-03-15 17:40:42 +01:00
e952be7fb2
gnu: r-clusterexperiment: Update to 2.18.2.
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* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.2.
2023-03-15 17:40:42 +01:00
7f7e39b89b
gnu: r-clusterprofiler: Update to 4.6.2.
...
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.6.2.
2023-03-15 17:40:42 +01:00
0e1edb67ae
gnu: r-sigpathway: Update to 1.66.2.
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* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.2.
2023-03-15 17:40:42 +01:00
f8c823274d
gnu: r-linnorm: Update to 2.22.2.
...
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.2.
2023-03-15 17:40:42 +01:00
969e7f1c4f
gnu: r-glmgampoi: Update to 1.10.2.
...
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.2.
2023-03-15 17:40:42 +01:00
590897d28f
gnu: r-diffbind: Update to 3.8.4.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.4.
2023-03-15 17:40:42 +01:00
af9bcbe90f
gnu: r-scmap: Update to 1.20.2.
...
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.2.
2023-03-15 17:40:42 +01:00
8c8930691c
gnu: r-mutationalpatterns: Update to 3.8.1.
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* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1.
2023-03-15 17:40:42 +01:00
364d9b7c17
gnu: r-muscat: Update to 1.12.1.
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* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1.
2023-03-15 17:40:42 +01:00
586d2bb696
gnu: r-limma: Update to 3.54.2.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2.
2023-03-15 17:40:42 +01:00
810a8e5060
gnu: r-lfa: Update to 1.28.2.
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* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2.
2023-03-15 17:40:42 +01:00
20b1ef8047
gnu: r-genomicalignments: Update to 1.34.1.
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* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1.
2023-03-15 17:40:42 +01:00
7f9346c031
gnu: r-annotationdbi: Update to 1.60.2.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2.
2023-03-15 17:40:42 +01:00
b9af764895
gnu: r-infercnv: Update to 1.14.2.
...
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2.
2023-03-15 17:40:42 +01:00
b28eff5aec
gnu: r-bandits: Update to 1.14.2.
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* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2.
2023-03-15 17:40:41 +01:00
eeece329e8
gnu: r-bambu: Update to 3.0.8.
...
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8.
2023-03-15 17:40:41 +01:00
fee92975a2
gnu: r-atena: Update to 1.4.1.
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* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1.
[propagated-inputs]: Add r-matrixstats.
2023-03-15 17:40:41 +01:00
9df1de70e1
gnu: r-alpsnmr: Update to 4.0.4.
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* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4.
[propagated-inputs]: Add r-cli.
2023-03-15 17:40:41 +01:00
accebcfce5
gnu: r-biocpkgtools: Update to 1.16.1.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1.
[source]: Add snippet to remove bundled minified JavaScript files.
[native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and
js-underscore.
[arguments]: Add build phase 'process-javascript.
2023-03-15 17:40:41 +01:00
db17611dc9
gnu: r-mast: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1.
[source]: Delete minified JavaScript.
[arguments]: Add build phase 'process-javascript.
[native-inputs]: Add esbuild and js-jquery-sticky-kit.
2023-03-15 17:40:38 +01:00
cacd7b6768
gnu: sbcl-nclasses: Update to 0.3.0.
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* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0.
2023-03-15 17:33:16 +01:00
8a47949463
gnu: Add sbcl-stumpwm-hostname.
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* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-03-15 15:49:20 +01:00
2c58713241
gnu: sbcl-mcclim: Update project urls.
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* gnu/packages/lisp-xyz.scm (sbcl-mcclim)[source]: Update source url.
[home-page]: Update project home page.
Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-03-15 15:46:13 +01:00
a4f6a8a2cf
gnu: reprotest: Update to 0.7.23.
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* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.23.
[phases] Update adjust-locales.
2023-03-15 15:39:14 +01:00
84ce4459f1
gnu: diffoscope: Update to 238.
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* gnu/packages/diffoscope.scm (diffoscope): Update to 238.
[native-inputs]: Switch from poppler to poppler-next.
2023-03-15 15:39:10 +01:00
201251b1ff
gnu: emacs-org-modern: Update to 0.9.
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* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.9.
2023-03-15 12:22:03 +04:00
d37b467631
gnu: r-rhandsontable: Move to (gnu packages cran).
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* gnu/packages/bioinformatics.scm (r-rhandsontable): Move this variable from
here...
* gnu/packages/cran.scm (r-rhandsontable): ...to here.
2023-03-14 17:58:28 +01:00
204c51cac4
gnu: Add r-premessa.
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* gnu/packages/bioinformatics.scm (r-premessa): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2023-03-14 17:58:28 +01:00
4ebc36206b
gnu: icecat: Update to 102.9.0-guix0-preview1 [security fixes].
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Includes fixes for CVE-2023-25751, CVE-2023-25752, CVE-2023-28162,
CVE-2023-28163, CVE-2023-28164, and CVE-2023-28176.
* gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
2023-03-14 12:51:20 -04:00
27c8ab4bf3
gnu: Add r-rhandsontable.
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* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable.
Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2023-03-14 17:48:14 +01:00
633c935e0a
gnu: r-tidyverse: Update to 2.0.0.
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* gnu/packages/cran.scm (r-tidyverse): Update to 2.0.0.
[propagated-inputs]: Remove r-crayon; add r-conflicted and r-ragg.
2023-03-14 14:15:33 +01:00
8fb1edcceb
gnu: pcb-rnd: Update to 3.1.0.
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* gnu/packages/engineering.scm (pcb-rnd): Update to 3.1.0.
[inputs]: Add librnd.
[arguments]: Use gexp; set LIBRND_PREFIX.
2023-03-14 14:15:33 +01:00
eacd68aa44
gnu: Add librnd.
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* gnu/packages/engineering.scm (librnd): New variable.
2023-03-14 14:15:33 +01:00
42bb34e21a
gnu: pcb: Remove eudev.
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* gnu/packages/engineering.scm (pcb)[inputs]: Remove eudev as it is no longer
necessary to add it for mesa.
2023-03-14 14:15:33 +01:00
e7dc5681a6
gnu: pcb: Drop input labels.
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* gnu/packages/engineering.scm (pcb)[inputs, native-inputs]: Remove package
labels.
2023-03-14 14:15:33 +01:00
c2ff0e2d13
gnu: pcb: Update to 4.3.0.
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* gnu/packages/engineering.scm (pcb): Update to 4.3.0.
[arguments]: Remove obsolete build phases.
2023-03-14 14:15:33 +01:00
6822730c8d
gnu: pcb: Use gexp.
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* gnu/packages/engineering.scm (pcb)[arguments]: Use gexp and drop trailing #T
from build phases.
2023-03-14 14:15:33 +01:00
c20e80b102
gnu: lepton-eda: Adjust format.
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* gnu/packages/engineering.scm (lepton-eda): Move arguments above inputs, and
reformat source field.
2023-03-14 14:15:33 +01:00
753fb6a54d
gnu: lepton-eda: Use gexp for arguments.
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* gnu/packages/engineering.scm (lepton-eda)[arguments]: Use gexp.
2023-03-14 14:15:33 +01:00
1c5ef6bd3c
gnu: lepton-eda: Drop input labels.
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* gnu/packages/engineering.scm (lepton-eda)[native-inputs, inputs]: Do not use
redundant package labels.
2023-03-14 14:15:33 +01:00
a6009e0bf8
gnu: guix-build-coordinator: Update to 0-73.7c1eedf.
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* gnu/packages/package-management.scm (guix-build-coordinator): Update to
0-73.7c1eedf.
2023-03-14 10:36:32 +00:00
Ricardo Wurmus
Pierre Neidhardt
jgart
Vagrant Cascadian
Andrew Tropin
Navid Afkhami
Mark H Weaver
Christopher Baines