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79115 Commits (1b44202e207f10e4288fefc31705a5ef1d2e685a)

Author SHA1 Message Date
Ricardo Wurmus 1b44202e20
gnu: r-genomicranges: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.44.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus d491b7eb1a
gnu: r-genomicfiles: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.28.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 62889b9915
gnu: r-genomicfeatures: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.0.
[propagated-inputs]: Add r-biocio.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 570e80d62f
gnu: r-genomicalignments: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.28.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus f88ab81fc7
gnu: r-genomeinfodb: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.0.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus ef7bbc40de
gnu: r-genomation: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.24.0.
[propagated-inputs]: Remove r-runit.
 2021-06-05 09:12:43 +02:00
Ricardo Wurmus 3c024e9e96
gnu: r-geneoverlap: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.28.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 389ce4e42b
gnu: r-genefilter: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.74.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus f22f4caa69
gnu: r-gage: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.42.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus ff59b34dc3
gnu: r-fastseg: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.38.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 6abbb53c3e
gnu: r-ensembldb: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus bdc1b908d3
gnu: r-edger: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus f998c95d60
gnu: r-edaseq: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 30ce1f9b66
gnu: r-dirichletmultinomial: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.34.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus e9445cdd78
gnu: r-dexseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.38.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 45225c60cc
gnu: r-deseq2: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.32.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 2835e7c0be
gnu: r-copywriter: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-copywriter): Update to 2.24.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus a8cfce4852
gnu: r-complexheatmap: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.8.0.
[propagated-inputs]: Remove r-s4vectors; add r-doparallel and r-foreach.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus d296ac9cde
gnu: r-chipseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.42.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus ca10bafc65
gnu: r-chipseeker: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.28.3.
[inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 336107c13d
gnu: r-category: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.58.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus e039d07bf8
gnu: r-bsgenome: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.60.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 98f3c55999
gnu: r-biovizbase: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.40.0.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 16fe6abd27
gnu: r-biostrings: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.0.
[propagated-inputs]: Add r-genomeinfodb.
 2021-06-05 09:12:42 +02:00
Ricardo Wurmus 3eedef80e4
gnu: r-biocparallel: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus f9ae0a4102
gnu: r-biomart: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.0.
[propagated-inputs]: Remove r-openssl and r-xml2; add r-digest.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 8be5d4f6fc
gnu: r-biobase: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.52.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus baaed6fd68
gnu: r-bamsignals: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.24.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 3e290768c6
gnu: r-aroma-light: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.22.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 2071ed58d5
gnu: r-annotationhub: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 4d13cf066d
gnu: r-annotationforge: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.34.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 361f2f647a
gnu: r-annotationfilter: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.16.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus c7811ed4bf
gnu: r-annotationdbi: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.0.
[propagated-inputs]: Add r-keggrest.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 1bb87755b8
gnu: r-annotate: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.70.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 308067c09c
gnu: r-affxparser: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus dfeb135ef0
gnu: r-affyio: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.62.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus a9083169c6
gnu: r-affycoretools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.64.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 3abb0b6523
gnu: r-affycontam: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.50.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus bd17befeb1
gnu: r-affycompatible: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.52.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus b045bf2d6f
gnu: r-affycomp: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.68.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus af04e2cc12
gnu: r-affy: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.70.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus 60b9546472
gnu: r-iranges: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.26.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus cfd4c05bd4
gnu: r-ideoviz: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.28.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 4075ac7287
gnu: r-bluster: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.2.1.
[propagated-inputs]: Add r-cluster.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 8eb0c715e3
gnu: r-delayedarray: Update to 0.18.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.18.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus f0f839c124
gnu: r-deepsnv: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus dec096f827
gnu: r-decipher: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.20.0.
[propagated-inputs]: Add r-dbi, r-iranges, r-s4vectors, and r-xvector.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 116df58449
gnu: r-cummerbund: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.34.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus e6c5d8ce2c
gnu: r-coverageview: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.30.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus 7bac473d06
gnu: r-biocgenerics: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.38.0.
 2021-06-05 09:12:40 +02:00