1b9d4e2e20
gnu: ruby-nokogiri: Upgrade to 1.6.7.1.
...
* gnu/packages/ruby.scm (ruby-nokogiri): Upgrade to 1.6.7.1.
2015-12-23 14:02:10 -05:00
d000fc92b1
gnu: Add ruby-mini-portile-2.
...
* gnu/packages/ruby.scm (ruby-mini-portile-2): New variable.
2015-12-23 14:02:06 -05:00
4de7aede50
gnu: icedtea7: Update to 2.6.3.
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* gnu/packages/java.scm (icedtea7): Update to 2.6.3.
2015-12-23 14:57:58 +01:00
e7173df87a
gnu: icedtea6: Update to 1.13.9.
...
* gnu/packages/java.scm (icedtea6): Update to 1.13.9.
2015-12-23 14:57:58 +01:00
a9257a873f
gnu: libmicrohttpd: Update to 0.9.48.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.48.
2015-12-22 22:50:58 +02:00
0877ef4342
gnu: parallel: Update to 20151222.
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* gnu/packages/parallel.scm (parallel): Update to 20151222.
2015-12-22 22:47:44 +02:00
419fa59b17
gnu: sipwitch: Update to 1.9.15.
...
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.15.
2015-12-22 22:45:41 +02:00
99e6f9c828
gnu: ucommon: Update to 7.0.0.
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* gnu/packages/telephony.scm (ucommon): Update to 7.0.0.
[inputs]: Add gnutls.
2015-12-22 22:39:48 +02:00
e54465ff85
gnu: isc-dhcp: Disable parallel build.
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* gnu/packages/admin.scm (isc-dhcp)[arguments]: Disable parallel build.
2015-12-22 10:45:13 -05:00
6548b1e122
gnu: isc-dhcp: Update to 4.3.3; update bundled bind to 9.9.8-P2.
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Fixes CVE-2015-8000 and CVE-2015-8461.
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3.
[inputs]: Add 'bind-source-tarball'.
[arguments]: Use modify-phases. Add 'replace-bundled-bind' phase.
In 'post-configure' phase, avoid hard-coding version numbers of
bundled bind.
2015-12-21 19:47:27 -05:00
f9a5b18897
gnu: bind-utils: Update to 9.10.3-P2.
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* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P2.
[source]: Use HTTP URI instead of FTP.
2015-12-21 19:47:26 -05:00
ab64483f64
file-systems: The 'device' field can be a UUID (bytevector).
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Previously a wrong-type-arg error would be raised when a file system
with a UUID (bytevector) field was encountered.
* gnu/system.scm (other-file-system-services)[device-mappings]: Check
whether FS's device is a string.
2015-12-22 00:29:43 +01:00
be21979d85
file-systems: Add a 'mount?' field.
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Fixes <http://bugs.gnu.org/22176 >.
Reported by Florian Paul Schmidt <mista.tapas@gmx.net>.
* gnu/system/file-systems.scm (<file-system>)[mount?]: New field.
(file-system->spec): Adjust accordingly.
* gnu/services/base.scm (file-system-dmd-service): Return the empty list
when FILE-SYSTEM has 'mount?' set to false.
(user-processes-service): Select the subset of FILE-SYSTEMS that matches
'file-system-mount?'.
* doc/guix.texi (File Systems): Document it.
2015-12-22 00:29:21 +01:00
e43e84ba7a
services: Add 'fstab-service-type'.
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* gnu/services/base.scm (file-system->fstab-entry)
(file-systems->fstab): New procedures.
(fstab-service-type): New variable.
* gnu/services/base.scm (file-system-dmd-service): New procedure, taken
from...
(file-system-service-type): ... here.
* gnu/system.scm (essential-services): Add FSTAB-SERVICE-TYPE instance.
2015-12-22 00:04:36 +01:00
12d38e8d43
build: Add bioconductor-uri procedure.
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* guix/build-system/r.scm (bioconductor-uri): New procedure.
2015-12-21 22:32:01 +01:00
8e92cfb101
gnu: Add vmpk.
...
* gnu/packages/music.scm (vmpk): New variable.
2015-12-21 22:09:47 +01:00
bf76d7802c
gnu: Add drumstick.
...
* gnu/packages/music.scm (drumstick): New variable.
2015-12-21 22:09:47 +01:00
ef9006451f
gnu: letsencrypt and acme: Update to 0.1.1.
...
These packages should be updated together.
* gnu/packages/tls.scm (letsencrypt): Update to 0.1.1.
[source]: Use pypi-uri.
* gnu/packages/tls.scm (acme): Update to 0.1.1.
[source]: Use pypi-uri.
2015-12-21 14:35:58 -05:00
704989660f
gnu: ffmpeg: Update to 2.8.4.
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* gnu/packages/video.scm (ffmpeg): Update to 2.8.4.
2015-12-21 21:30:46 +02:00
d12717cba0
doc: Be more explicit in example of file-systems configuration.
...
* gnu/system/examples/bare-bones.tmpl (file-systems): Change device
label.
* gnu/system/examples/desktop.tmpl (file-systems): Likewise.
2015-12-21 13:12:07 -05:00
dd81635571
doc: Explain significance of partition labels.
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* doc/guix.texi (Preparing for Installation): Point out relationship
between partition labels and the file-system configuration.
2015-12-21 12:53:12 -05:00
f0150f8724
gnu: grub: Add fix for CVE-2015-8730.
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* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
2015-12-21 12:33:55 -05:00
e2cd1d0fb9
gnu: Add GenomicRanges.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
2015-12-21 17:22:16 +01:00
0e7d5560de
gnu: Add XVector.
...
* gnu/packages/bioinformatics.scm (r-xvector): New variable.
2015-12-21 17:22:16 +01:00
bf7764b74f
gnu: Add GenomeInfoDb.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
2015-12-21 17:22:16 +01:00
78addcb0eb
gnu: Add IRanges.
...
* gnu/packages/bioinformatics.scm (r-iranges): New variable.
2015-12-21 17:22:16 +01:00
7485129e4f
gnu: Add S4Vectors.
...
* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
2015-12-21 17:22:16 +01:00
d29b25c490
gnu: Add BiocGenerics.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
2015-12-21 17:22:16 +01:00
9fba89e829
gnu: Add r-acsnminer.
...
* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
2015-12-21 17:21:26 +01:00
9e47f30b08
gnu: Add r-gridextra.
...
* gnu/packages/statistics.scm (r-gridextra): New variable.
2015-12-21 17:21:26 +01:00
b73751c8ff
gnu: Add r-gtable.
...
* gnu/packages/statistics.scm (r-gtable): New variable.
2015-12-21 17:21:26 +01:00
77bdb276e9
gnu: Add r-rmarkdown.
...
* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
prevent circular package module imports.
2015-12-21 17:13:44 +01:00
4c1f2705b5
gnu: Add r-catools.
...
* gnu/packages/statistics.scm (r-catools): New variable.
2015-12-21 17:13:44 +01:00
bb6d2dadf7
gnu: Add r-bitops.
...
* gnu/packages/statistics.scm (r-bitops): New variable.
2015-12-21 17:13:44 +01:00
8406138b72
gnu: Add AdaptiveSparsity.
...
* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
2015-12-21 16:05:38 +01:00
e22d4ca4c4
gnu: Add r-rcpparmadillo.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
2015-12-21 16:05:37 +01:00
b15e47f9e6
gnu: Add armadillo.
...
* gnu/packages/maths.scm (armadillo): New variable.
2015-12-21 15:47:40 +01:00
b1186502a4
doc: Fix outdated claim about CRAN importer.
...
* doc/guix.texi: The CRAN importer no longer extracts information from
the HTML package description but from the package's DESCRIPTION file.
2015-12-21 15:25:10 +01:00
be036757bd
import: Drop empty list items.
...
* guix/import/cran.scm (listify): Remove empty strings from result list.
2015-12-21 15:24:54 +01:00
0cb5bc2cff
http-client: Support basic authentication.
...
* guix/http-client.scm (http-fetch): Add Authorization header to request
when the URI contains userinfo.
2015-12-21 15:24:44 +01:00
086e498bcf
gnu: Add libgit2.
...
* gnu/packages/version-control.scm (libgit2): New variable.
2015-12-21 15:22:14 +01:00
02f35bb5a7
gnu: mafft: Update to 7.267.
...
* gnu/packages/bioinformatics.scm (mafft): Update to 7.267.
[arguments]: Don't include mafft-homologs manpage.
[inputs]: Add gawk and grep.
[propagated-inputs]: Add coreutils.
2015-12-21 15:16:01 +01:00
1ef3f91a70
gnu: rxvt-unicode: Install the terminal capability data.
...
This provides the necessary terminal capability data, which are required
by ncurses-based applications.
* gnu/packages/xdisorg.scm (rxvt-unicode)[native-inputs]: Add ncurses.
[arguments]: Set the destination of the terminfo files.
[native-search-path]: New field. Make them automatically available to
the user.
2015-12-21 13:35:34 +01:00
72d8b5baf4
gnu: msmtp: Update to 1.6.3.
...
* gnu/packages/mail.scm (msmtp): Update to 1.6.3.
[inputs]: Add libsecret.
2015-12-21 09:36:15 +02:00
ec92806ae5
gnu: claws-mail: Update to 3.13.1.
...
* gnu/packages/mail.scm (claws-mail): Update to 3.13.1.
2015-12-21 09:17:47 +02:00
56918e26cf
gnu: python-cython: Update to 0.23.4.
...
* gnu/packages/python.scm (python-cython): Update to 0.23.4.
2015-12-21 06:55:13 +02:00
e99711af22
gnu: ruby: Update to 2.2.4.
...
This version fixes CVE-2015-7551.
* gnu/packages/ruby.scm (ruby): Update to 2.2.4.
2015-12-20 22:40:53 -05:00
c5b303c57f
lint: The CPE name of GRUB is "grub2".
...
Reported by Leo Famulari.
* guix/scripts/lint.scm (package-name->cpe-name): Add "grub".
2015-12-20 22:34:22 +01:00
724a7d9c74
packages: Remove now redundant graph procedures.
...
These procedures are now redundant with those in (guix graph) and are no
longer used since commit a51cbecb
2015-12-20 22:34:22 +01:00
ccda8f7d7f
profiles: Honor search paths of propagated inputs.
...
Fixes <http://bugs.gnu.org/22073 >.
Reported by Federico Beffa <beffa@ieee.org>.
* guix/profiles.scm (package->manifest-entry): Use
'package-transitive-native-search-paths' when computing
'search-paths' field.
* tests/profiles.scm ("package->manifest-entry, search paths"): New test.
2015-12-20 22:34:22 +01:00
Ben Woodcroft
Ricardo Wurmus
Efraim Flashner
Mark H Weaver
Ludovic Courtès
Ricardo Wurmus
Leo Famulari
Mathieu Lirzin
David Thompson