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88753 Commits (1e2b82b9328b5d6cd4101731ed58e605b88aa68c)

Author SHA1 Message Date
muradm 7f7a075c3d
gnu: crates-io: Add rust-enquote 1.1.0.
* gnu/packages/crates-io.scm (rust-enquote-1): New variable

Signed-off-by: Lars-Dominik Braun <ldb@leibniz-psychology.org>
2022-06-17 10:30:36 +02:00
Maxim Cournoyer 6fc33d91ba
gnu: dropbear: Build with X11 forwarding support.
* gnu/packages/ssh.scm (dropbear)[phases]
{enable-x11-forwarding}: New phase.
2022-06-16 21:52:49 -04:00
Maxim Cournoyer bf9c98b11d
gnu: dropbear: Update to 2022.82.
* gnu/packages/ssh.scm (dropbear): Update to 2022.82.
[source]: Delete origin snippet's trailing #t.
[arguments]: Use gexps.
[tests?]: Update comment.
2022-06-16 21:52:49 -04:00
Maxim Cournoyer 1589debbd9
gnu: ovmf: Use gexps.
* gnu/packages/firmware.scm (edk2-commit, edk2-version)
(edk2-origin): Delete variables.
(ovmf)[source]: Define here; it's the only user of it so far.
[native-inputs]: Move below arguments.
[phases]: Use gexps.  Delete trailing #t.
{patch-source}: New phase.
{configure}: Use 'invoke' to execute the 'edksetup.sh' script; delete
associated FIXME comment.
(ovmf-aarch64, ovmf-arm): Adjust accordingly.
2022-06-16 21:52:49 -04:00
Petr Hodina a88de093fb
gnu: hcxtools: Update to 6.2.7.
* gnu/packages/networking.scm (hcxtools): Update to 6.2.7.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 23:57:41 +02:00
Petr Hodina 9317cb3e9c
gnu: hcxtools: Use gexps.
* gnu/packages/networking.scm (hcxtools)[arguments]: Link libraries and
use PREFIX instead of INSTALL_DIR.
[phases]: Use gexps.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 23:57:41 +02:00
Efraim Flashner ab82dd3f58
gnu: llvm-9: Fix building on riscv64-linux.
* gnu/packages/llvm.scm (llvm-12)[arguments]: Add a phase to update
config.guess when config is one of the native-inputs.
(llvm-10)[native-inputs]: Add config when building for riscv64-linux and
the llvm version is less than 11.
2022-06-16 19:42:02 +03:00
Efraim Flashner 3c7736f745
gnu: polkit-qt: Update to 1-0.114.0.
* gnu/packages/polkit.scm (polkit-qt): Update to 1-0.114.0.
[source]: Update to new source URI.
2022-06-16 17:57:34 +03:00
Ricardo Wurmus f700223c3b
gnu: Add pyscenic.
* gnu/packages/bioinformatics.scm (pyscenic): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus 3535d8dc5a
gnu: Add python-arboreto.
* gnu/packages/bioinformatics.scm (python-arboreto): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus fbe5707b73
gnu: Add python-ctxcore.
* gnu/packages/bioinformatics.scm (python-ctxcore): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus d62dbedd6d
gnu: Add python-bokeh.
* gnu/packages/python-xyz.scm (python-bokeh): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus 21e9e67c77
gnu: Add python-multiprocessing-on-dill.
* gnu/packages/python-xyz.scm (python-multiprocessing-on-dill): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus 62c5121472
gnu: Add python-interlap.
* gnu/packages/python-xyz.scm (python-interlap): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus e4dbf938ea
gnu: python-locket: Update to 1.0.0.
* gnu/packages/python-xyz.scm (python-locket): Update to 1.0.0.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus a3613f11d5
gnu: Add python-pyarrow-0.16.
* gnu/packages/databases.scm (python-pyarrow-0.16): New variable.
2022-06-16 15:20:59 +02:00
Ricardo Wurmus c8727617e5
gnu: Add apache-arrow-0.16.
* gnu/packages/databases.scm (apache-arrow-0.16): New variable.
2022-06-16 15:20:59 +02:00
Paul A. Patience 59ec9e3f3e
gnu: Add cl-policy-cond.
* gnu/packages/lisp-xyz.scm (sbcl-policy-cond, cl-policy-cond,
  ecl-policy-cond): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-16 14:56:16 +02:00
John Kehayias 67c30ff8ad
gnu: rocm: Update to 5.1.3.
All packages updated at the same time as they have a shared version. rocclr is
no longer a stand-alone package, so the previous version is kept as rocclr-4
and the current version is just the source, rocclr-src, needed by rocm-opencl-runtime.

* gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-nocltrace.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Update patches.
* gnu/packages/rocm.scm (rocm-cmake, rocm-device-libs, rocm-comgr,
roct-thunk-interface, rocr-runtime, rocm-opencl-runtime, rocminfo,
rocm-bandwidth-test): Update to 5.1.3.
(roct-thunk-interface)[inputs]: Add libdrm.
[native-inputs]: Add gcc:lib and pkg-config.
(rocclr-src): New variable.
(rocclr-4): New variable (previous version of the package).
(rocm-opencl-runtime)[source]: Remove obsolete patches.
[arguments]: Rewrite with gexps. Add needed #:configure-flags.
[inputs]: Remove rocclr, add numactl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 12:50:06 +02:00
John Kehayias 25809f5a40
gnu: Update llvm-for-rocm: Update to 5.1.3.
* gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.1.3, now based on llvm-14.
[source]{patches}: Remove unneeded patches (add_Object and add_libraries) and add new one (linkdl).
* gnu/packages/patches/llvm-roc-3.0.0-add_libraries.patch,
gnu/packages/patches/llvm-roc-4.2.0-add_Object.patch: Delete files.
* gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update to match current patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 12:50:06 +02:00
David Wilson 677ae314f6
gnu: herbstluftwm: Update to 0.9.4.
* gnu/packages/wm.scm (herbstluftwm): Update to 0.9.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 12:50:06 +02:00
Artyom V. Poptsov c48c69cfa3
gnu: libtree: Update to 3.1.1.
* gnu/packages/linux.scm (libtree): Update to 3.1.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-16 12:50:05 +02:00
Guillaume Le Vaillant ef2d908e22
gnu: getmail6: Update to 6.18.9.
* gnu/packages/mail.scm (getmail6): Update to 6.18.9.
  [description]: Fix typo.
2022-06-16 10:25:13 +02:00
Vinicius Monego 5d28f089ef
gnu: Add python-zeep.
* gnu/packages/python-web.scm (python-zeep): New variable.
* gnu/packages/patches/python-zeep-Fix-pytest_httpx-test-cases.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com>
2022-06-16 09:25:55 +02:00
Hartmut Goebel 9ee6d9cb17
gnu: Add python-pytest-httpx.
* gnu/packages/python-check.scm (python-pytest-httpx): New variable.
2022-06-16 09:25:55 +02:00
Vinicius Monego 2950ef2fff
gnu: Add python-flake8-blind-except.
* gnu/packages/python-xyz.scm (python-flake8-blind-except): New variable.

Co-authored-by: Hartmut Goebel <h.goebel@crazy-compilers.com>
2022-06-16 09:25:55 +02:00
Vinicius Monego 7a8beb3dea
gnu: python-requests-file: Update to 1.5.1.
* gnu/packages/python-xyz.scm (python-requests-file): Update to 1.5.1.
[source]: Make some cosmetic changes.
[arguments]<#:phases>: Override 'check phase.
[home-page]: Don't break line.
2022-06-16 09:25:55 +02:00
Vinicius Monego e0b6cd0947
gnu: Add python-flake8-debugger.
* gnu/packages/python-xyz.scm (python-flake8-debugger): New variable.
2022-06-16 09:25:55 +02:00
Ludovic Courtès 128697d43c
gnu: wayland-protocols: Add 'release-monitoring-url' property.
* gnu/packages/freedesktop.scm (wayland-protocols)[properties]: New
field.
2022-06-15 23:49:24 +02:00
Efraim Flashner 0929657ec6
gnu: eigen: Honor the #:tests? flag.
* gnu/packages/algebra.scm (eigen)[arguments]: Adjust the custom 'check
phase to honor the #:tests? flag.
2022-06-15 21:54:35 +03:00
Clément Lassieur 673983c9c6
gnu: emacs-lsp-mode: Update to 8.0.1-0.4aafe25.
* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 8.0.1-0.4aafe25.
[arguments]: Add a 'fix-patch-el-files' phase.
2022-06-15 15:39:50 +02:00
Tobias Geerinckx-Rice a431d1dbc5
gnu: bind: Update to 9.16.30.
* gnu/packages/dns.scm (isc-bind): Update to 9.16.30.
2022-06-12 02:00:00 +02:00
Hartmut Goebel 9cccf6490d
gnu: Add rebar3-proper.
* gnu/packages/erlang.scm (rebar3-proper): New variable.
2022-06-15 10:58:10 +02:00
Hartmut Goebel ffc18b87f9
gnu: Add rebar3-git-vsn.
* gnu/packages/erlang.scm (rebar3-git-vsn): New variable.
2022-06-15 10:58:09 +02:00
Hartmut Goebel 1e6d64c2dc
gnu: Add rebar3-raw-deps.
* gnu/packages/erlang.scm (rebar3-raw-deps): New variable.
2022-06-15 10:58:09 +02:00
Hartmut Goebel 00eea05ab8
gnu: Add rebar3.
* gnu/packages/erlang.scm (rebar3): New variable.
2022-06-15 10:58:08 +02:00
Hartmut Goebel 0018a4788b
gnu: Add erlang-covertool.
* gnu/packages/erlang.scm (erlang-covertool): New variable.
2022-06-15 10:58:08 +02:00
Hartmut Goebel eb8c8ba11f
gnu: Add erlang-proper.
* gnu/packages/erlang.scm (erlang-proper): New variable.
2022-06-15 10:18:49 +02:00
Hartmut Goebel d723e8d94b
gnu: Add erlang-jsone.
* gnu/packages/erlang.scm (erlang-jsone): New variable.
2022-06-15 10:18:48 +02:00
Hartmut Goebel e0376bc8a4
gnu: Add erlang-edown.
* gnu/packages/erlang.scm (erlang-edown): New variable.
2022-06-15 10:18:48 +02:00
Hartmut Goebel 4af9fa1130
gnu: Add erlang-relx.
* gnu/packages/erlang.scm (erlang-relx): New variable.
2022-06-15 10:18:48 +02:00
Hartmut Goebel 539695e9d5
gnu: Add erlang-ssl-verify-fun.
* gnu/packages/erlang.scm (erlang-ssl-verify-fun): New variable.
2022-06-15 10:18:47 +02:00
Hartmut Goebel 2b474f45c1
gnu: Add erlang-hex-core.
* gnu/packages/erlang.scm (erlang-hex-core): New variable.
2022-06-15 10:18:46 +02:00
Hartmut Goebel 8680f3fbb7
gnu: Add erlang-parse-trans.
* gnu/packages/erlang.scm (erlang-parse-trans): New variable.
2022-06-15 10:18:46 +02:00
Hartmut Goebel 0e6f4572c1
gnu: Add erlang-providers.
* gnu/packages/erlang.scm (erlang-providers): New variable.
2022-06-15 10:18:45 +02:00
Hartmut Goebel 6cec25f232
gnu: Add erlang-eunit-formatters.
* gnu/packages/erlang.scm (erlang-eunit-formatters): New variable.
2022-06-15 10:18:45 +02:00
Hartmut Goebel a6b7caa190
gnu: Add erlang-getopt.
* gnu/packages/erlang.scm (erlang-getopt): New variable.
2022-06-15 10:18:44 +02:00
Hartmut Goebel d146de283b
gnu: Add erlang-bbmustache.
* gnu/packages/erlang.scm (erlang-bbmustache): New variable.
2022-06-15 10:18:44 +02:00
Hartmut Goebel bb4546defd
gnu: Add erlang-cth-readable.
* gnu/packages/erlang.scm (erlang-cth-readable): New variable.
2022-06-15 10:18:44 +02:00
Hartmut Goebel a6a1e4b9f4
gnu: Add erlang-erlware-commons.
* gnu/packages/erlang.scm (erlang-erlware-commons): New variable.
2022-06-15 10:18:43 +02:00
Hartmut Goebel b5c81fb289
gnu: Add erlang-certifi.
* gnu/packages/erlang.scm (erlang-certifi): New variable.
2022-06-15 10:18:43 +02:00
Hartmut Goebel 922588402e
gnu: Add erlang-cf.
* gnu/packages/erlang.scm (erlang-cf): New variable.
2022-06-15 10:18:42 +02:00
Ludovic Courtès 8a04ac4b2f
gnu: slurm: Update to 22.05.1.
* gnu/packages/parallel.scm (slurm): Update to 22.05.1.
(slurm-21.08): New variable.
2022-06-15 00:25:22 +02:00
Petr Hodina 887b23a73c
gnu: Add kismet.
* gnu/packages/networking.scm (kismet): New variable.
* gnu/local.mk: Add patch.
* gnu/packages/patches/kismet-unbundle-boost.patch: New file.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:22 +02:00
Petr Hodina e51517d077
gnu: libwesockets: Update license.
* gnu/packages/web.scm (libwebsockets)[license]: Change to expat.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:22 +02:00
Alexandros Theodotou c363843349
gnu: rtmidi: Add version 5.0.0.
* gnu/packages/audio.scm (rtmidi): Update to 5.0.0.
(rtmidi-4.0): New variable.
* gnu/packages/music.scm (milkytracker)[inputs]: Use RTMIDI-4.0 rather
than RTMIDI.
(zrythm)[inputs]: Likewise.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:21 +02:00
Alexandros Theodotou d22bee814c
gnu: libadwaita: Update to 1.1.0.
* gnu/packages/gnome.scm (libadwaita): Update to 1.1.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:21 +02:00
Olivier Dion 7735e8ed90
gnu: lttng-ust: Fix dependencies.
* gnu/packages/instrumentation.scm (lttng-ust): Fix dependencies.
[inputs]: Remove liburcu.
[propagated-inputs]: Add liburcu.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:21 +02:00
Attila Lendvai 8cb1a49a39
services: configuration: Use *unspecified* instead of 'disabled.
Use *unspecified* as a marker for field values that have not been set.

Rationale: 'disabled may easily clash with user values for boolean fields, is
confusing (i.e. its meaning is *not* boolean false, but unspecified) and it
also passes silently through the symbol? predicate of a field of type symbol.

* gnu/services/configuration.scm (configuration-missing-default-value):
Renamed from configuration-no-default-value.
(define-maybe-helper): Use *unspecified* instead of 'disabled, and make
the default value optional.
* gnu/home/services/desktop.scm (home-redshift-configuration):
Change (maybe-xyz 'disabled) to maybe-xyz.
* gnu/services/authentication.scm (nslcd-configuration): Likewise.
* gnu/services/cgit.scm (repository-cgit-configuration): Likewise.
* gnu/services/file-sharing.scm (serialize-maybe-string)
(serialize-maybe-file-object): Use 'unspecified?' instead of (eq? val
'disabled).
* gnu/services/messaging.scm (raw-content?): Likewise.
(ssl-configuration): Change (maybe-xyz 'disabled) to maybe-xyz.
(prosody-configuration): Likewise.
* gnu/services/file-sharing.scm (transmission-daemon-configuration):
Likewise.
* gnu/services/messaging.scm (define-all-configurations):
Use *unspecified* instead of 'disabled'.
* gnu/services/networking.scm (opendht-configuration): Likewise.
* gnu/services/pm.scm (tlp-configuration): Likewise.
* gnu/services/telephony.scm (jami-account): Likewise.
(jami-configuration): Likewise.
* gnu/services/vpn.scm (openvpn-client-configuration): Likewise.
* tests/services/configuration.scm ("maybe type, no default")
("maybe type, with default"): New tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:21 +02:00
Attila Lendvai e11517052b
services: configuration: Support (field1 maybe-number "") format.
As opposed to explicitly using 'disabled as value, or using the
(field1 (maybe-number) "") format.

It's mostly the work of Maxime Devos shared under #54674, with some
modifications by Attila Lendvai.

* gnu/services/configuration.scm (normalize-field-type+def): New function.
(define-configuration-helper) (define-configuration): Support new field
format.
* tests/services/configuration.scm (config-with-maybe-number->string): New
function.
("maybe value serialization of the instance"): New test.
("maybe value serialization of the instance, unspecified"): New test.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-15 00:25:21 +02:00
Ludovic Courtès 7046e77721
system: <operating-system> compiler truly honors the 'system' argument.
Fixes <https://issues.guix.gnu.org/55951>.

* gnu/system.scm (operating-system-compiler): Parameterize
'%current-system' and '%current-target-system' before calling
'operating-system-derivation'.
* tests/system.scm ("lower-object, %current-system sensitivity"): New
test.
2022-06-15 00:25:20 +02:00
Marius Bakke 13c46cc29d
gnu: PostgreSQL: Promote version 14 to the default.
* gnu/packages/databases.scm (postgresql): Alias to POSTGRESQL-14.
* gnu/packages/qt.scm (qtbase-5)[inputs]: Stay on POSTGRESQL-13.
2022-06-14 23:33:54 +02:00
Marius Bakke bd16e7c32d
gnu: python-asyncpg: Update to 0.25.0.
* gnu/packages/databases.scm (python-asyncpg): Update to 0.25.0.
[native-inputs]: Remove PYTHON-FLAKE8, PYTHON-PYCODESTYLE, PYTHON-SPHINX,
PYTHON-SPHINX-RTD-THEME, and PYTHON-SPHINXCONTRIB-ASYNCIO.
2022-06-14 23:33:54 +02:00
Marius Bakke d51a097460
gnu: python-tortoise-orm: Update to 0.19.1.
* gnu/packages/databases.scm (python-tortoise-orm): Update to 0.19.1.
2022-06-14 23:33:53 +02:00
Marius Bakke 3f033b6d9e
gnu: python-pypika-tortoise: Update to 0.1.5.
* gnu/packages/databases.scm (python-pypika-tortoise): Update to 0.1.5.
2022-06-14 23:33:53 +02:00
Marius Bakke 9f1713f219
gnu: gplates: Update to 2.3.01-beta.3.
* gnu/packages/geo.scm (gplates): Update to 2.3.01-beta.3.
[source](uri): Adjust for beta releases.
[source](file-name): Adjust for zipball.
[native-inputs]: Add UNZIP.
[inputs]: Simplify.
2022-06-14 23:33:53 +02:00
Marius Bakke ec4515389a
gnu: perl-dbd-pg: Update to 3.15.1.
* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.15.1.
2022-06-14 23:33:53 +02:00
Marius Bakke 334c849ba1
gnu: python-acme, certbot: Update to 1.28.0.
* gnu/packages/tls.scm (python-acme): Update to 1.28.0.
[arguments]: Override check phase.
(certbot)[source]: Update hash.
2022-06-14 23:33:53 +02:00
Marius Bakke 73e0063888
gnu: python-josepy: Update to 1.13.0.
* gnu/packages/python-crypto.scm (python-josepy): Update to 1.13.0.
[propagated-inputs]: Remove PYTHON-SIX.
2022-06-14 23:33:53 +02:00
Marius Bakke d73b88d826
gnu: TimescaleDB: Update to 2.7.0.
* gnu/packages/databases.scm (timescaledb): Update to 2.7.0.
[source](snippet): Remove more files.
[source](patches): New field.
* gnu/packages/patches/timescaledb-flaky-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-06-14 23:33:52 +02:00
Marius Bakke b98a61a8f8
gnu: ruby-pg: Update to 1.3.5.
* gnu/packages/ruby.scm (ruby-pg): Update to 1.3.5.
[home-page]: Change to current.
[source]: Switch to GIT-FETCH.
[arguments]: Add #:phases.
2022-06-14 23:33:52 +02:00
Marius Bakke 4601dccb36
gnu: PostgreSQL@13: Update replacement to 13.7 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-13/replacement): Update to 13.7.
2022-06-14 23:33:52 +02:00
Marius Bakke 3787f56734
gnu: PostgreSQL@10: Update to 10.21 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-10): Update to 10.21.
2022-06-14 23:33:52 +02:00
Marius Bakke a18f937b56
gnu: PostgreSQL@11: Update to 11.16 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-11): Update to 11.16.
2022-06-14 23:33:52 +02:00
Marius Bakke f4f31bb99c
gnu: PostgreSQL@14: Update to 14.3 [fixes CVE-2022-1552].
* gnu/packages/databases.scm (postgresql-14): Update to 14.3.
2022-06-14 23:33:51 +02:00
Marius Bakke e03b450c36
gnu: PostgreSQL: Permit loading plugins from symlink unions again.
...this fixes a regression since 49b350fafc where the patch to disable
symlink resolving went missing from versions < 14.

* gnu/packages/databases.scm (postgresql-13/replacement): New variable.
(postgresql-13)[replacement]: New field.
(postgresql-11)[source](patches): Add 'postgresql-disable-resolve_symlinks.patch'.
2022-06-14 23:33:51 +02:00
Greg Hogan 8e97491277
gnu: dos2unix: Update to 7.4.3.
* gnu/packages/textutils.scm (dos2unix): Update to 7.4.3.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-06-12 02:00:00 +02:00
Greg Hogan 142d136abd
gnu: htop: Update to 3.2.1.
* gnu/packages/admin.scm (htop): Update to 3.2.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-06-12 02:00:00 +02:00
Greg Hogan ad05cb6a3c
gnu: ccache: Update to 4.6.1.
* gnu/packages/ccache.scm (ccache): Update to 4.6.1.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-06-12 02:00:00 +02:00
Maxim Cournoyer a860a5fa95
services: dbus: Add a VERBOSE? configuration option.
* gnu/services/dbus.scm (<dbus-configuration>)[verbose?]: New field.
(dbus-shepherd-service): Use it.
(dbus-service)[verbose?]: Add argument and update doc.
* doc/guix.texi (Desktop Services): Document it.
2022-06-14 14:23:21 -04:00
Maxim Cournoyer 3aaf52a129
gnu: Add dbus-verbose.
* gnu/packages/glib.scm (dbus-verbose): New variable.
2022-06-14 14:23:21 -04:00
Liliana Marie Prikler 330d2778a9
gnu: komikku: Update to 0.39.0.
* gnu/packages/gnome.scm (komikku): Update to 0.39.0.
2022-06-14 19:01:33 +02:00
Liliana Marie Prikler 391544a596
gnu: webkitgtk: Update to 2.36.3.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.36.3.
2022-06-14 19:01:29 +02:00
Maxim Cournoyer 3dd32e76b0
gnu: h-client: Fetch source from Savannah again.
* gnu/packages/hardware.scm (h-client)[source]: Update URL and associated
comment.
2022-06-14 11:56:03 -04:00
Guillaume Le Vaillant 99c43cf344
gnu: cl-fof: Update to 0.2.0-1.522879e.
* gnu/packages/lisp-xyz.scm (sbcl-fof): Update to 0.2.0-1.522879e.
  [inputs]: Sort inputs.
  [arguments]: Remove 'fix-build' phase.
2022-06-14 16:18:07 +02:00
Guillaume Le Vaillant d1f3bba66c
gnu: cl-dexador: Remove input labels.
* gnu/packages/lisp-xyz.scm (sbcl-dexador)[inputs, native-inputs]: Remove
  labels and sort inputs.
2022-06-14 15:54:09 +02:00
André A. Gomes 893fc788fb
gnu: cl-dexador: Update to 0.9.15-1.74a233e.
* gnu/packages/lisp-xyz.scm (sbcl-dexador): Update to 0.9.15-1.74a233e.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:53:20 +02:00
Guillaume Le Vaillant 0fd660a2b2
gnu: cl-fof: Fix build with recent cl-serapeum.
* gnu/packages/lisp-xyz.scm (sbcl-fof)[inputs]: Remove labels and add
  sbcl-named-readtables.
  [arguments]: Add 'fix-build' phase.
2022-06-14 15:38:21 +02:00
Paul A. Patience 50b6377bc4
gnu: cl-serapeum: Update to 0.0.0-7.d2150c6.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 0.0.0-7.d2150c6.
  [inputs]: Remove sbcl-named-readtables and sbcl-fare-quasiquote.
  Add sbcl-introspect-environment and sbcl-trivial-cltl2.
  [native-inputs]: Add sbcl-atomics.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:20:47 +02:00
Paul A. Patience f11b6ac9ac
gnu: cl-serapeum: Use G-expressions.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum)[arguments]: Use G-expressions and
  simplify the 'disable-failing-tests' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:15:42 +02:00
Paul A. Patience 240ac3b75c
gnu: cl-serapeum: Remove input labels.
* gnu/packages/lisp-xyz.scm (sbcl-serapeum)[inputs, native-inputs]: Remove
  labels.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-06-14 15:14:24 +02:00
Arun Isaac 6f75565b4e
gnu: python-httpx: Update to 0.23.0.
* gnu/packages/python-web.scm (python-httpx): Update to 0.23.0.
2022-06-14 18:06:24 +05:30
Arun Isaac 2ac81f482a
gnu: python-httpcore: Update to 0.15.0.
* gnu/packages/python-web.scm (python-httpcore): Update to 0.15.0.
[arguments]: Override asyncio_mode when invoking pytest in check phase.
2022-06-14 18:06:20 +05:30
Tobias Geerinckx-Rice 2682b12ca4
gnu: dovecot: Update to 2.3.19.1.
* gnu/packages/mail.scm (dovecot): Update to 2.3.19.1.
2022-06-12 02:00:09 +02:00
Tobias Geerinckx-Rice e1b647fdf6
gnu: sudo: Update to 1.9.11p2.
* gnu/packages/admin.scm (sudo): Update to 1.9.11p2.
2022-06-12 02:00:00 +02:00
Tobias Geerinckx-Rice 88b098d9ba
gnu: python-parted: Rename to python-pyparted.
* gnu/packages/disk.scm (python-pyparted): New variable renamed from…
(python-parted): …this, to better follow the package naming guidelines.
Redefine it using DEPRECATED-PACKAGE.
2022-06-12 02:00:00 +02:00
Tobias Geerinckx-Rice 67ff676792
gnu: python-parted: Update to 3.12.0.
* gnu/packages/disk.scm (python-parted): Update to 3.12.0.
[arguments]: Run the default 'check phase at the default time.
2022-06-12 02:00:00 +02:00
Vagrant Cascadian 824f2afcf0
gnu: autogen: Build reproducibly.
* gnu/packages/autogen.scm (autogen)[arguments]: Add
  'use-numeric-ids-in-tarball phase.
2022-06-13 20:56:47 -07:00
Vagrant Cascadian 3691e37eb1
gnu: autogen: Build with guile 3.0.
* gnu/packages/autogen.scm (autogen)[arguments]: Add 'support-guile-3.0 phase.
  [inputs]: Remove guile-2.2 and add guile-3.0.
2022-06-13 20:56:30 -07:00
Artyom V. Poptsov 4ff9f1689d
gnu: java-commons-lang3: Update to 3.12.0
* gnu/packages/java.scm (java-commons-lang3): Update to 3.12.0.
* gnu/packages/patches/java-commons-lang-fix-dependency.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-06-13 22:49:13 +02:00
Andreas Enge f2ed82eb53
gnu: sollya: Update to 8.0.
* gnu/packages/algebra.scm (sollya): Update to 8.0.
2022-06-13 17:50:28 +02:00
Andreas Enge 89fefe2fd4
gnu: python-fpylll: Update to 0.5.7.
* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.7.
  [source]: Revert from git to pypi.
2022-06-13 17:40:30 +02:00
Andreas Enge 5dec5f65ec
gnu: fplll: Update to 5.4.2.
* gnu/packages/algebra.scm (fplll): Update to 5.4.2.
[source]: Remove patch; for unknown reasons the package now compiles
without it.
* gnu/packages/patches/fplll-std-fenv.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Unregister patch.
2022-06-13 17:16:54 +02:00
Ricardo Wurmus 35124d0087
gnu: r-quantpsyc: Update to 1.6.
* gnu/packages/statistics.scm (r-quantpsyc): Update to 1.6.
[propagated-inputs]: Add r-dplyr and r-purrr.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 789c7ab505
gnu: r-mnormt: Update to 2.1.0.
* gnu/packages/statistics.scm (r-mnormt): Update to 2.1.0.
[propagated-inputs]: Remove r-tmvnsim.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 3d7adc9b21
gnu: r-flexmix: Update to 2.3-18.
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-18.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 5fe57da316
gnu: r-r-oo: Update to 1.25.0.
* gnu/packages/statistics.scm (r-r-oo): Update to 1.25.0.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus ed945c7732
gnu: r-e1071: Update to 1.7-11.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-11.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 03aba54185
gnu: r-segmented: Update to 1.6-0.
* gnu/packages/statistics.scm (r-segmented): Update to 1.6-0.
[propagated-inputs]: Add r-nlme.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 944b4224e8
gnu: r-xml: Update to 3.99-0.10.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.10.
2022-06-13 15:24:30 +02:00
Ricardo Wurmus 912792320a
gnu: r-rcurl: Update to 1.98-1.7.
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.7.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus ebcb0aa321
gnu: r-dbplyr: Update to 2.2.0.
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.2.0.
[propagated-inputs]: Remove r-ellipsis; add r-cli and r-pillar.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus e1297b31c1
gnu: r-sendmailr: Update to 1.2-1.1.
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.2-1.1.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus d7d62bcd61
gnu: r-zoom: Update to 2.0.6.
* gnu/packages/cran.scm (r-zoom): Update to 2.0.6.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 23c6a87e5d
gnu: r-pkgdown: Update to 2.0.4.
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.4.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus b7b5e7d4f2
gnu: r-infer: Update to 1.0.2.
* gnu/packages/cran.scm (r-infer): Update to 1.0.2.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus fa3f80e44f
gnu: r-yardstick: Update to 1.0.0.
* gnu/packages/cran.scm (r-yardstick): Update to 1.0.0.
[propagated-inputs]: Remove r-proc; add r-hardhat.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 839ec236e4
gnu: r-hardhat: Update to 1.1.0.
* gnu/packages/cran.scm (r-hardhat): Update to 1.1.0.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 2e0e58863a
gnu: r-posterior: Update to 1.2.2.
* gnu/packages/cran.scm (r-posterior): Update to 1.2.2.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus 694eabcc17
gnu: r-rsconnect: Update to 0.8.26.
* gnu/packages/cran.scm (r-rsconnect): Update to 0.8.26.
2022-06-13 15:24:29 +02:00
Ricardo Wurmus bc0b78bf32
gnu: r-mi: Update to 1.1.
* gnu/packages/cran.scm (r-mi): Update to 1.1.
[native-inputs]: Add r-knitr.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 4cc33ce2b2
gnu: r-gghighlight: Update to 0.3.3.
* gnu/packages/cran.scm (r-gghighlight): Update to 0.3.3.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus ea5377a641
gnu: r-torch: Update to 0.8.0.
* gnu/packages/cran.scm (r-torch): Update to 0.8.0.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus e0a7f404eb
gnu: r-univoutl: Update to 0.4.
* gnu/packages/cran.scm (r-univoutl): Update to 0.4.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 17f70b7363
gnu: r-randtoolbox: Update to 2.0.1.
* gnu/packages/cran.scm (r-randtoolbox): Update to 2.0.1.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 2327b15d31
gnu: r-terra: Update to 1.5-34.
* gnu/packages/cran.scm (r-terra): Update to 1.5-34.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus f85842a8e2
gnu: r-aplot: Update to 0.1.6.
* gnu/packages/cran.scm (r-aplot): Update to 0.1.6.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 58ec67948c
gnu: r-kernlab: Update to 0.9-31.
* gnu/packages/cran.scm (r-kernlab): Update to 0.9-31.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus bee70949b9
gnu: r-haplo-stats: Update to 1.8.9.
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.9.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 1821a127e7
gnu: r-adegenet: Update to 2.1.7.
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.7.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 3e38a5167d
gnu: r-classint: Update to 0.4-7.
* gnu/packages/cran.scm (r-classint): Update to 0.4-7.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 68c1510295
gnu: r-apcluster: Update to 1.4.10.
* gnu/packages/cran.scm (r-apcluster): Update to 1.4.10.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 0f94dd778c
gnu: r-parallelly: Update to 1.32.0.
* gnu/packages/cran.scm (r-parallelly): Update to 1.32.0.
2022-06-13 15:24:28 +02:00
Ricardo Wurmus 313c4234a0
gnu: r-rmpfr: Update to 0.8-9.
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-9.
2022-06-13 15:24:27 +02:00
Ricardo Wurmus cac7de2fc5
gnu: r-sodium: Update to 1.2.1.
* gnu/packages/cran.scm (r-sodium): Update to 1.2.1.
2022-06-13 15:24:27 +02:00
Ricardo Wurmus b3dca70aa1
gnu: r-admisc: Update to 0.28.
* gnu/packages/cran.scm (r-admisc): Update to 0.28.
2022-06-13 15:24:27 +02:00
Ricardo Wurmus 58e256383f
gnu: r-rgl: Update to 0.109.2.
* gnu/packages/cran.scm (r-rgl): Update to 0.109.2.
[propagated-inputs]: Add r-base64enc and r-mime.
[native-inputs]: Add r-rmarkdown.
2022-06-13 15:24:14 +02:00
Ricardo Wurmus 739a195622
gnu: r-flextable: Update to 0.7.2.
* gnu/packages/cran.scm (r-flextable): Update to 0.7.2.
2022-06-13 14:21:51 +02:00
Ricardo Wurmus 9d0ce9aaf4
gnu: r-officer: Update to 0.4.3.
* gnu/packages/cran.scm (r-officer): Update to 0.4.3.
2022-06-13 14:21:51 +02:00
Ricardo Wurmus 7edac5cd0a
gnu: r-rdpack: Update to 2.3.1.
* gnu/packages/cran.scm (r-rdpack): Update to 2.3.1.
2022-06-13 14:21:51 +02:00
Ricardo Wurmus ba881471ac
gnu: r-ellipse: Update to 0.4.3.
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.3.
2022-06-13 14:21:50 +02:00
Ricardo Wurmus c3bbdd4a5b
gnu: r-sna: Update to 2.7.
* gnu/packages/cran.scm (r-sna): Update to 2.7.
2022-06-13 14:21:50 +02:00
Ricardo Wurmus d72d39eaaf
gnu: r-processx: Update to 3.6.0.
* gnu/packages/cran.scm (r-processx): Update to 3.6.0.
2022-06-13 14:21:49 +02:00
Ricardo Wurmus 18fd4e7d70
gnu: r-vcd: Update to 1.4-10.
* gnu/packages/cran.scm (r-vcd): Update to 1.4-10.
2022-06-13 14:21:49 +02:00
Ricardo Wurmus 9ccb6b4bee
gnu: r-ipred: Update to 0.9-13.
* gnu/packages/cran.scm (r-ipred): Update to 0.9-13.
2022-06-13 14:21:49 +02:00
Ricardo Wurmus 8221425e3e
gnu: r-progressr: Update to 0.10.1.
* gnu/packages/cran.scm (r-progressr): Update to 0.10.1.
2022-06-13 14:21:48 +02:00
Ricardo Wurmus 38dde27cb3
gnu: r-bdsmatrix: Update to 1.3-6.
* gnu/packages/cran.scm (r-bdsmatrix): Update to 1.3-6.
2022-06-13 14:21:48 +02:00
Ricardo Wurmus c992406b5a
gnu: r-sp: Update to 1.5-0.
* gnu/packages/cran.scm (r-sp): Update to 1.5-0.
2022-06-13 14:21:48 +02:00
Ricardo Wurmus 6ffd58142c
gnu: r-proxy: Update to 0.4-27.
* gnu/packages/cran.scm (r-proxy): Update to 0.4-27.
2022-06-13 14:21:47 +02:00
Ricardo Wurmus 65464d9027
gnu: r-restrserve: Update to 1.2.0.
* gnu/packages/cran.scm (r-restrserve): Update to 1.2.0.
2022-06-13 14:21:47 +02:00
Ricardo Wurmus ae4c1cb0b3
gnu: r-benchmarkme: Update to 1.0.8.
* gnu/packages/cran.scm (r-benchmarkme): Update to 1.0.8.
[propagated-inputs]: Add r-stringr.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus 1917b1f63e
gnu: r-afpt: Update to 1.1.0.2.
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.2.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus fce6aeba7e
gnu: r-nbpseq: Update to 0.3.1.
* gnu/packages/bioconductor.scm (r-nbpseq): Update to 0.3.1.
2022-06-13 14:21:46 +02:00
Ricardo Wurmus 37378829bc
gnu: r-restfulr: Update to 0.0.14.
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.14.
2022-06-13 14:21:42 +02:00
Ricardo Wurmus 7846896156
gnu: Add js-mathjax-for-r-mathjaxr.
* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable.
2022-06-13 12:43:31 +02:00
Lars-Dominik Braun 97ebfc8f5c
gnu: python-asyncssh: Update to 2.11.0.
* gnu/packages/ssh.scm (python-asyncssh)[version]: Update to 2.11.0.
[propagated-inputs]: Add python-typing-extensions.
[native-inputs]: Add python-fido2, python-aiofiles, netcat and
python-pytest.
[arguments]: Disable netcat autodetection. Replace 'check with call
to pytest.
2022-06-13 12:30:17 +02:00
Artyom V. Poptsov b40761ca9d
gnu: Add python-langcodes.
* gnu/packages/python-xyz.scm (python-langcodes): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-13 12:27:35 +02:00
terramorpha fcad622648
services: guix: Generalize extensions.
* gnu/services/base.scm (<guix-extension>): New record type.
(guix-extension-merge): New procedure.
(guix-service-type): Honor extensions.
* doc/guix.texi (Base Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-06-13 12:27:35 +02:00
Ludovic Courtès 8918ce6d16
gnu: racket: Avoid use of (ice-9 exceptions).
Fixes <https://issues.guix.gnu.org/54546>.
Reported by Giovanni Biscuolo <g@xelera.eu>
and Michael Chirillo <michael.a.chirillo@gmail.com>.

* gnu/packages/racket.scm (racket): Rewrite in terms of SRFI-34/35
instead of (ice-9 exceptions).
2022-06-13 12:27:34 +02:00
Guillaume Le Vaillant c318f4fcb1
gnu: txr: Update to 277.
* gnu/packages/lisp.scm (txr): Update to 277.
  [inputs]: Add zlib.
2022-06-13 11:06:57 +02:00
Ludovic Courtès 6aa457fed1
Merge branch 'staging' 2022-06-13 08:57:51 +02:00
Marius Bakke d4482e9a9e
gnu: ungoogled-chromium: Update to 102.0.5005.115-1.
* gnu/packages/chromium.scm (%chromium-version): Set to 102.0.5005.115.
(%ungoogled-revision): Set to 1.
(%ungoogled-origin, ungoogled-chromium): Update hash.
2022-06-13 00:44:12 +02:00
Marius Bakke bcd9866eb4
gnu: LLVM, Clang, LLD: Update to 14.0.5.
* gnu/packages/llvm.scm (llvm-14, clang-14, lld-14): Update to 14.0.5.
(%llvm-monorepo-hashes, %llvm-patches): Adjust accordingly.
2022-06-13 00:44:12 +02:00
Marius Bakke d3d00b1b4f
gnu: uBlock Origin: Update to 1.43.0.
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.43.0.
2022-06-13 00:44:12 +02:00
Ricardo Wurmus 0006a9a83a
gnu: Add r-deconvr.
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
2022-06-12 22:51:23 +02:00
Ricardo Wurmus eec1724ea6
gnu: Add r-rsq.
* gnu/packages/cran.scm (r-rsq): New variable.
2022-06-12 22:51:23 +02:00
Ludovic Courtès 622545de6c
Merge branch 'master' into staging 2022-06-12 22:49:47 +02:00
jgart 9c036f2dfb
gnu: Add emacs-corfu-doc-terminal.
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12 13:19:24 +02:00
jgart a473d74ff1
gnu: Add emacs-corfu-terminal.
* gnu/packages/emacs-xyz.scm (emacs-corfu-terminal): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-12 13:19:23 +02:00
Efraim Flashner e22b55f0b9
gnu: llvm-14: Fix configure-flags for cross-compiling.
* gnu/packages/llvm.scm (llvm-14)[arguments]: Fix syntax error in
configure-flags when cross-compiling llvm.
2022-06-12 13:50:47 +03:00
Efraim Flashner 3cbef19a90
gnu: zig: Limit to 64bit systems.
* gnu/packages/zig.scm (zig)[supported-systems]: New field.
2022-06-12 13:50:47 +03:00
Ricardo Wurmus 541823b318
gnu: r-hdf5array: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.1.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus a12ec47cbd
gnu: r-universalmotif: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.14.1.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus a76b657d93
gnu: r-rsubread: Update to 2.10.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
2022-06-12 11:16:30 +02:00
Ricardo Wurmus 41435e0e1c
gnu: r-clusterprofiler: Update to 4.4.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus 640b45d73c
gnu: r-monocle: Update to 2.24.1.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus 8ed8c8b8da
gnu: r-chippeakanno: Update to 3.30.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
2022-06-12 11:16:29 +02:00
Ricardo Wurmus 46aab4d33d
gnu: r-zellkonverter: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus 7a344aa9e2
gnu: r-keggrest: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus 1ecac84c73
gnu: r-genomicfeatures: Update to 1.48.3.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus 15e26f97d9
gnu: r-biocparallel: Update to 1.30.3.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3.
[propagated-inputs]: Add r-codetools.
2022-06-12 11:16:28 +02:00
Ricardo Wurmus f5899fe58b
gnu: r-deepsnv: Update to 1.42.1.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
2022-06-12 11:16:23 +02:00
Julien Lepiller 965d54e344
gnu: java-plexus-component-metadata: Fix package.
* gnu/packages/java.scm (java-plexus-component-metadata): Apply fix for
  newer jdom.
2022-06-12 09:07:17 +02:00
Felix Lechner 0d09e2e29d
gnu: xcb-proto: Update to 1.15.
* gnu/packages/xorg.scm (xcb-proto): Update to 1.15.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-06-09 15:26:49 +02:00
Ludovic Courtès 091eb323ba
Merge branch 'master' into staging 2022-06-08 14:53:16 +02:00
Ludovic Courtès 8c3e9da13a
Merge branch 'master' into core-updates 2022-06-08 14:46:24 +02:00
jgart via Guix-patches via 0c5299200f
gnu: Add emacs-pyimport.
* gnu/packages/emacs-xyz.scm (emacs-pyimport): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:14:41 +02:00
Stefan Reichör 7fbf02b854
gnu: Add emacs-toodoo.
* gnu/packages/emacs-xyz.scm (emacs-toodoo): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:09:04 +02:00
Thomas Albers 1ba8c74de3
gnu: Add emacs-opencl-mode.
* gnu/packages/emacs-xyz.scm (emacs-opencl-mode): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-06-08 00:02:53 +02:00
Ludovic Courtès 05fef7bfc6
gnu: timescaledb: Adjust test preparation to PostgreSQL 13.6.
The previous method of making a union with symlinks would work with 13.4
but not with 13.6, which has an extra 'canonicalize_path' call in
'find_my_exec'.

* gnu/packages/databases.scm (timescaledb)[arguments]: In
'prepare-tests', pass #:symlink argument to 'union-build'.
2022-06-07 23:58:16 +02:00
Ludovic Courtès b422687cbd
gnu: postgresql@10: Fix manual compilation.
This is a followup to f0227a18c2.

* gnu/packages/databases.scm (postgresql-10)[native-inputs]: New field.
2022-06-05 17:00:18 +02:00
Ludovic Courtès 5035be651a
gnu: docbook-sgml: Add 4.2.
* gnu/packages/docbook.scm (docbook-sgml-4.2, docbook-sgml-4.1): New
variables.
(docbook-sgml): Make an alias to 'docbook-sgml-4.1'.
2022-06-05 17:00:18 +02:00
Ludovic Courtès 5b6b4ade7c
gnu: go: Make 'make-go-std' memoizing.
* gnu/packages/golang.scm (make-go-std): Use 'mlambdaq'.
2022-06-05 17:00:18 +02:00
Ludovic Courtès fb21085d25
gnu: go-std: Make public.
* gnu/packages/golang.scm (go-std-1.14, go-std-1.16, go-std-1.17): New
variables.
2022-06-05 17:00:17 +02:00
Tobias Geerinckx-Rice 75eae3fd78
gnu: emacs-rainbow-mode: Update to 1.0.6.
* gnu/packages/emacs-xyz.scm (emacs-rainbow-mode): Update to 1.0.6.
2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 1dc22f19e8
gnu: emacs-undo-tree: Update to 0.8.2.
* gnu/packages/emacs-xyz.scm (emacs-undo-tree): Update to 0.8.2.
2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 4fc248ada2
gnu: emacs-ghub: Update to 3.5.6.
* gnu/packages/emacs-xyz.scm (emacs-ghub): Update to 3.5.6.
2022-06-05 02:00:01 +02:00
Tobias Geerinckx-Rice 9105c60f0d
gnu: putty: Update to 0.77.
* gnu/packages/networking.scm (putty): Update to 0.77.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Remove the old 'chdir phase.  Add a custom 'check phase.
[native-inputs]: Add perl.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 66c5e40762
gnu: emacs-d-mode: Update to 2.0.12.
* gnu/packages/emacs-xyz.scm (emacs-d-mode): Update to 2.0.12.
2022-06-05 02:00:00 +02:00
Tobias Geerinckx-Rice 8578b8d8b5
gnu: openmpi: Update to 4.1.4.
* gnu/packages/mpi.scm (openmpi): Update to 4.1.4.
2022-06-05 02:00:00 +02:00