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2359 Commits (20456fd016a78d396f2a8f0c347de728167f0d99)

Author SHA1 Message Date
Ricardo Wurmus f4b108d872
gnu: r-icobra: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus 7e9a13d789
gnu: r-ggtree: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus e52eb93765
gnu: r-treeio: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus 34ba8b256b
gnu: r-systempiper: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus 6b1375d3af
gnu: r-msnbase: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus f917fa4e50
gnu: r-ensembldb: Update to 2.18.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus 30038c5738
gnu: r-chipseeker: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus 443ed83bc3
gnu: r-annotationdbi: Update to 1.56.2. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
 2021-11-18 13:17:57 +00:00
Vagrant Cascadian 8f392c4817
gnu: r-msfeatures: Fix typo. 
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Fix spelling of
  "package".
 2021-11-14 17:41:48 -08:00
Ricardo Wurmus 30b67fdb6a
gnu: r-tximeta: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 76f32aae88
gnu: r-biscuiteer: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.8.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 14ff65b0e8
gnu: r-omnipathr: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.0.
[propagated-inputs]: Add r-crayon.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 2f03e3e1ef
gnu: r-dmrseq: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.14.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 86a3ae96d1
gnu: r-bsseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.30.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus fd3a180b32
gnu: r-biotmle: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.18.0.
[propagated-inputs]: Remove r-dofuture and r-future.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 494379d015
gnu: r-biotip: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.8.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus b2b920b38e
gnu: r-bioqc: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.22.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 73ace000f4
gnu: r-bionetstat: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.14.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 2aebb7bfab
gnu: r-bionet: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.54.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 95c1308b4f
gnu: r-bionero: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.2.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus 1086cfcb7f
gnu: r-biomvrcns: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.34.0.
 2021-11-07 22:34:59 +00:00
Ricardo Wurmus bb98b978c3
gnu: r-biomvcclass: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.62.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 739c420d1e
gnu: r-mvcclass: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.68.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 29f14a86bf
gnu: r-biomformat: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.22.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 1503c74ce0
gnu: r-biodb: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.0.
[propagated-inputs]: Add r-biocfilecache.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus dbfdfecfd1
gnu: r-biocdockermanager: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.6.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 79285bf0da
gnu: r-biocthis: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.4.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus a7a77af71a
gnu: r-basilisk: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.6.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus fd0d144044
gnu: r-basilisk-utils: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.6.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus c91514edd1
gnu: r-dir-expiry: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.2.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus c14f5bd30a
gnu: r-genetclassifier: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.34.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus b8394117f9
gnu: r-minet: Update to 3.52.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.52.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 6cec550e20
gnu: r-biobtreer: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.6.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus b223a11c41
gnu: r-bgeedb: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus bdb55dcdf7
gnu: r-bgeecall: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.10.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 744c9f4351
gnu: r-beclear: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.10.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 8dd33b890a
gnu: r-megadepth: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.4.0.
 2021-11-07 22:34:58 +00:00
Ricardo Wurmus 7ed7b40b18
gnu: r-ballgown: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.26.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 558abe3b47
gnu: r-sushi: Update to 1.31.0. 
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.31.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus c7641e4327
gnu: r-guitar: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.10.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 97c0e316d3
gnu: r-chromstar: Update to 1.19.0. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.19.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 41c4e6391d
gnu: r-snpstats: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.44.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus ce510880ec
gnu: r-pathview: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.34.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus a8fb8beb31
gnu: r-ldblock: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.24.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 7b6b39bd97
gnu: r-kegggraph: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.54.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus ab00f1b61c
gnu: r-gwascat: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.26.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 38a7f29374
gnu: r-gviz: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 6d193b3288
gnu: r-ggbio: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.42.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus b1de4e61a0
gnu: r-erma: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-erma): Update to 1.10.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus eed4a322f1
gnu: r-catalyst: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 9df8fa7b38
gnu: r-msmstests: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.32.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 357c74ef3e
gnu: r-msmseda: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.32.0.
 2021-11-07 22:34:57 +00:00
Ricardo Wurmus 2de21518f1
gnu: r-biocio: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.4.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus ffcb3606d0
gnu: r-mscoreutils: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 5c75a6d18e
gnu: r-delayedmatrixstats: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.16.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus de38a03f61
gnu: r-sparsematrixstats: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.6.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus e4cfcbfda3
gnu: r-scran: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 980e6af8aa
gnu: r-scater: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.22.0.
[propagated-inputs]: Add r-ggrepel.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 08defd9cdb
gnu: r-scuttle: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.4.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus c7b54ba026
gnu: r-singlecellexperiment: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.16.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 9f7327588d
gnu: r-chromvar: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.16.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 5eb0f4d20e
gnu: r-motifmatchr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.16.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus d15fac3713
gnu: r-tfbstools: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.32.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus d6130127e8
gnu: r-cner: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.30.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 756f5411a9
gnu: r-beachmat: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.10.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 29111142d1
gnu: r-rhdf5lib: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.16.0.
 2021-11-07 22:34:56 +00:00
Ricardo Wurmus 6f2d0551f1
gnu: r-hdf5array: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 77450726d6
gnu: r-hitc: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-hitc): Update to 1.38.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 2603747a56
gnu: r-fithic: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-fithic): Update to 1.20.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 7752397cf1
gnu: r-rgraphviz: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.38.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 1417f1171c
gnu: r-s4vectors: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 51f9943d1e
gnu: r-preprocesscore: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.56.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus fdf61867d6
gnu: r-icens: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.66.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 0d62874ccf
gnu: r-m3c: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.16.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 1be95ea425
gnu: r-rgreat: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.26.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus af5ff34f24
gnu: r-pcatools: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.6.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus b24de9bf77
gnu: r-biodist: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.66.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus b9c74b05d7
gnu: r-biocworkflowtools: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.20.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus 2e0b3797af
gnu: r-biocset: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus b2253e6ceb
gnu: r-biocpkgtools: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus a6dd46bfc5
gnu: r-biocor: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.18.0.
 2021-11-07 22:34:55 +00:00
Ricardo Wurmus b9275baa5a
gnu: r-bioconcotk: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.14.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus e46b5ad21b
gnu: r-multiassayexperiment: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.20.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus c208e75fe4
gnu: r-grohmm: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.28.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 2adab76473
gnu: r-experimenthub: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus f1014a64c9
gnu: r-biocviews: Update to 1.62.1. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.62.1.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus d13db6d1c5
gnu: r-biocstyle: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.22.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 388fa5f020
gnu: r-biocgraph: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.56.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus fa77f4f154
gnu: r-bioccheck: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.30.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 755fd4d87d
gnu: r-ebarrays: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.58.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 71eae6eabe
gnu: r-reactomepa: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.38.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 7ea681d5d5
gnu: r-graphite: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.40.0.
[native-inputs]: Remove r-knitr.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 7034456e2c
gnu: r-biobroom: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.26.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 27791b2517
gnu: r-bioassayr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.32.0.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 9e6f77714b
gnu: r-chemminer: Update to 3.46.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.46.0.
[propagated-inputs]: Add r-jsonlite and r-stringi.
 2021-11-07 22:34:54 +00:00
Ricardo Wurmus 97e275b7b9
gnu: r-bigpint: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.10.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 8eef74bce1
gnu: r-biggr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.30.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 2b5e606027
gnu: r-hyperdraw: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.46.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 14b524486d
gnu: r-hypergraph: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.66.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 66674da16d
gnu: r-rsbml: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.52.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 4100392b19
gnu: r-bifet: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.14.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus afb55b19d4
gnu: r-bicare: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.52.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 69362a6222
gnu: r-bhc: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.46.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 8c6a8a6072
gnu: r-bgx: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.60.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 1feba301d6
gnu: r-bgmix: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.54.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus fcaf2e80ad
gnu: r-universalmotif: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.1.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus cdb78e54e6
gnu: r-unifiedwmwqpcr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.30.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus f61d3ac6ce
gnu: r-htqpcr: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.48.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus de8a55d138
gnu: r-variancepartition: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.0.
[propagated-inputs]: Remove r-colorramps; add r-matrix and r-rlang.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus beb530df2a
gnu: r-variantfiltering: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.30.0.
 2021-11-07 22:34:53 +00:00
Ricardo Wurmus 8dbca889e0
gnu: r-timeseriesexperiment: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.12.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus a326c65428
gnu: r-wavcluster: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.28.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus bbfeee3ee4
gnu: r-reqon: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.40.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 10a7837bb8
gnu: r-seqbias: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.42.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 8305dd2411
gnu: r-bigmelon: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.20.0.
[propagated-inputs]: Add r-illuminaio.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 0837205009
gnu: r-gdsfmt: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.30.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus f3e1fe2b2f
gnu: r-watermelon: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 316bf235c0
gnu: r-roc: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.70.0.
[propagated-inputs]: Remove r-knitr.
[native-inputs]: Add r-knitr.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 26e3242dba
gnu: r-genie3: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.16.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus cace0f424b
gnu: r-circrnaprofiler: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.8.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 6f9be50deb
gnu: r-cicero: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.12.0.
 2021-11-07 22:34:52 +00:00
Ricardo Wurmus 75aed1303a
gnu: r-chicago: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.22.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 398007448c
gnu: r-rcistarget: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.14.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 20d81fa969
gnu: r-depecher: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.10.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 765ed6a2c9
gnu: r-mixomics: Update to 6.17.26. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.17.26.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 789958567e
gnu: r-flowsom: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.2.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 76a0df65d2
gnu: r-cytoml: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.6.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus b6410270ba
gnu: r-opencyto: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.6.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 101cad4791
gnu: r-flowstats: Update to 4.6.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.6.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 42df07647a
gnu: r-flowworkspace: Update to 4.6.0. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.6.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus a27ff891a6
gnu: r-rprotobuflib: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.6.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 007e62be63
gnu: r-flowclust: Update to 3.32.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.32.0.
[inputs]: Remove gsl.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 3bffe05708
gnu: r-flowviz: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.58.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 833c945998
gnu: r-ggcyto: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.22.0.
 2021-11-07 22:34:51 +00:00
Ricardo Wurmus 224eccca7a
gnu: r-ncdfflow: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.40.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 9e01b4118e
gnu: r-flowmeans: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.54.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus fe947b3c0e
gnu: r-flowcore: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.6.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 6e07dec942
gnu: r-cytolib: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 9e3ee89786
gnu: r-consensusclusterplus: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.58.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 311adddab3
gnu: r-flowutils: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.58.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus c58ed007a2
gnu: r-rsubread: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 4940f6d680
gnu: r-annotatr: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.20.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus b960dc7be5
gnu: r-biosigner: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.22.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 1e2401b767
gnu: r-ropls: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 970e3e291e
gnu: r-multidataset: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.22.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus 505b5d2685
gnu: r-birewire: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus c3ce59c624
gnu: r-rqc: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.28.0.
 2021-11-07 22:34:50 +00:00
Ricardo Wurmus e2aa710ca4
gnu: r-quasr: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.34.0.
[propagated-inputs]: Remove r-biocmanager.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 80980d827a
gnu: r-rhisat2: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.10.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 0187dd1a1d
gnu: r-sgseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.28.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 1b455ccb4b
gnu: r-rbowtie: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.34.0.
[inputs]: Remove zlib.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 0e507e0059
gnu: r-iclusterplus: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.30.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus f592a0a4ee
gnu: r-biocfilecache: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 2a9f215cd1
gnu: r-arrmnormalization: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.34.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 5d77708905
gnu: r-progeny: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.16.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus ba9573b14e
gnu: r-rbowtie2: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.0.0.
[inputs]: Add samtools.
[propagated-inputs]: Add r-magrittr and r-rsamtools.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus efbe72addb
gnu: r-zfpkm: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.16.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus eb5f243f1b
gnu: r-zinbwave: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.16.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus d43703c41a
gnu: r-webbioc: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.66.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus b058ff1f75
gnu: r-widgettools: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.72.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus a4ab371edf
gnu: r-wiggleplotr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.18.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 2704f4d596
gnu: r-wrench: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.12.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus e06acf2682
gnu: r-xcms: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.0.
[propagated-inputs]: Add r-msfeatures.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 482cec7a53
gnu: r-massspecwavelet: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 972e9f4224
gnu: r-roar: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.30.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus b00d8a1e74
gnu: r-yarn: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.20.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 13d51fe643
gnu: r-quantro: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.28.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 7fc5084e00
gnu: r-gcrma: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.66.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 240e1f0598
gnu: r-yapsa: Update to 1.19.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.19.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 2b769d0981
gnu: r-somaticsignatures: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.30.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus cb48316936
gnu: r-gtrellis: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.26.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 6a4b381268
gnu: r-yamss: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.20.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 4c18a6b644
gnu: r-ebimage: Update to 4.36.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.36.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus a69776dcb5
gnu: r-aucell: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.16.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 7b6e7ac7bf
gnu: r-allelicimbalance: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.32.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 776c53a967
gnu: r-annotationtools: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.68.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus e79f4779ce
gnu: r-abaenrichment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.24.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus b7057dbac6
gnu: r-gofuncr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.14.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 46de5a7503
gnu: r-atacseqqc: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 2ba1756960
gnu: r-genomicscores: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 0b8b2b63a2
gnu: r-motifstack: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.38.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 9a27f82d03
gnu: r-motifbreakr: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.8.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus a906e93378
gnu: r-motifdb: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.36.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 38ca6643c4
gnu: r-rgadem: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 4f6f03fd6e
gnu: r-bacon: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.22.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 6b27532fea
gnu: r-abseqr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.12.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 172cddcbec
gnu: r-a4: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus c0207d4f7c
gnu: r-a4base: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 9b249fc8a9
gnu: r-a4reporting: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 0b06e8ee13
gnu: r-a4preproc: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus c179aae47e
gnu: r-a4classif: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 5785c45e01
gnu: r-a4core: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.42.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 85c2a802f9
gnu: r-annaffy: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.66.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 58c2b7978f
gnu: r-mlinterfaces: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.74.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus b4127b3490
gnu: r-clusterexperiment: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.14.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 2e9821cd11
gnu: r-clusterprofiler: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 498f45bcad
gnu: r-enrichplot: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.1.
[propagated-inputs]: Remove r-cowplot; add r-aplot and r-yulab-utils.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 9b6dee4c0d
gnu: r-dose: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 6dbc856518
gnu: r-fgsea: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus bca9a6b4c1
gnu: r-fcscan: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.8.0.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2021-11-07 22:34:46 +00:00