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135703 Commits (21b9cd035536f4875b4f0a1b526a385b17d08d63)

Author SHA1 Message Date
Ricardo Wurmus 21b9cd0355
gnu: r-adam: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-adam): Update to 1.20.0.

Change-Id: I417244fa99e124a285fb020e758ba471d6620d4e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus e28ff2ed30
gnu: r-adacgh2: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.44.0.
[propagated-inputs]: Remove r-snapcgh.

Change-Id: I47c7a0d00d32cf71ec2f16844ab3a60d120cfc3f
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 5d1d4936b1
gnu: r-absseq: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.58.0.

Change-Id: I9433d9307416e967a70587eee5b5d891c270f8ee
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 1fdc5eba8a
gnu: r-abarray: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.72.0.

Change-Id: I207f652b0c5f6d9069de675f245f4fb471d560e9
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 6dbc09c6d0
gnu: r-tximportdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.32.0.

Change-Id: If18a4d7d8b6877beedec24cb17a989e7485af8c8
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 6332e4ed23
gnu: r-tcgabiolinksgui-data: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.24.0.

Change-Id: Ie34a052ff74d193f7472ef25fa9fabf6dbbb19a7
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 0148d18e4b
gnu: r-sesamedata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.22.0.

Change-Id: I7b57169a24d3f210f9d5373d375c1fcdc8a32b76
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 49912ae08e
gnu: r-parathyroidse: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.42.0.

Change-Id: I1ee5d4eb8d2f511cd437851aa6fd17b23f85b548
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 8c4929306f
gnu: r-curatedtcgadata: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.26.0.

Change-Id: Ia96fe42b0b41043879cff80d99c56b48afb06e5b
2024-05-08 12:53:17 +02:00
Ricardo Wurmus a14d5f02b9
gnu: r-gagedata: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.42.0.

Change-Id: I3a8be1fb8255f621b6481dabdeac5460b90ebbb7
2024-05-08 12:53:17 +02:00
Ricardo Wurmus eca80e2bf7
gnu: r-affydata: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.52.0.

Change-Id: Ibbdeca7d8ed91da88d14f547403d43c8b9e45775
2024-05-08 12:53:17 +02:00
Ricardo Wurmus aa538cc886
gnu: r-all: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-all): Update to 1.46.0.

Change-Id: I20d1f918a24e47cee853668b736639369c1e904e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus f27c6caa8c
gnu: r-hsmmsinglecell: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.24.0.

Change-Id: Ie94c7cd87ac4cdaad47035cb110fb58bb6f68126
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 5b5c134658
gnu: r-pasilla: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.32.0.

Change-Id: I90a11b64f4cba746c9d5d70bd7746497fe3781a6
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 7d5f112600
gnu: r-msigdb: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.12.0.

Change-Id: Ia63cb5d074afcd5b6c597d22c4e5c4f14b59303d
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 46eb71b653
gnu: r-msexperiment: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.6.0.
[propagated-inputs]: Add r-biocgenerics and r-dbi.

Change-Id: I1acadf9e878f4593baf583933c5ccca3daf7ec0d
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 7e05fa61b0
gnu: r-msdata: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.44.0.

Change-Id: I479c861eceb1f50c91d589118a68e217236e89e4
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 27c00a789e
gnu: r-minfidata: Update to 0.50.0.
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.50.0.

Change-Id: I6504e8f6ffe57ba1cdf538d2f60c21ff26b06407
2024-05-08 12:53:16 +02:00
Ricardo Wurmus efc85dfb4d
gnu: r-mousegastrulationdata: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.18.0.

Change-Id: I4b005c54451d7c306cb4137e4fe668c6e53c840a
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 16e58db1ba
gnu: r-methylclockdata: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-methylclockdata): Update to 1.12.0.

Change-Id: Ibfa765d93c0ed2005f7fb6f630c3104cd30e8371
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 3b1f4f041d
gnu: r-macrophage: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.20.0.

Change-Id: I589dd25948fedd3bbe91fddada8e155567cf2d93
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 89a647662c
gnu: r-jaspar2016: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-jaspar2016): Update to 1.32.0.

Change-Id: I826a8a93e0adce98b7ad767c8fbaa7ffb957c554
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 5c28a456e7
gnu: r-italicsdata: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.42.0.

Change-Id: I10947b136b273e06b9ac88bf1786b62b0a6739f5
2024-05-08 12:53:16 +02:00
Ricardo Wurmus cd0b5d0892
gnu: r-illumina450probevariants-db: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.40.0.

Change-Id: Ic18b5dcdda0e002375bb9ed43944168f78eb2906
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 3f122a9a1a
gnu: r-hdcytodata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.24.0.

Change-Id: Icf2ad5519ee710c3b275f2f608a2bc7674bf3805
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 38d81984dc
gnu: r-genomationdata: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.36.0.

Change-Id: Idf6dbb8e87ed124d9dd3ae10ff3ea78c58b22496
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 66f99b50e5
gnu: r-genelendatabase: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.39.0.

Change-Id: I0630a8fed9f28ad5883a8bb1e4f3c77f16e7ac34
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 76805a5744
gnu: r-flowsorted-blood-epic: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.8.0.

Change-Id: I000d233d1a78f36e8daed08f0112cc592b2f99f6
2024-05-08 12:53:16 +02:00
Ricardo Wurmus aded842e92
gnu: r-flowsorted-blood-450k: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.42.0.

Change-Id: I07c3a8640e8b7ca9e36b0a3e81d9831fc4d7299e
2024-05-08 12:53:16 +02:00
Ricardo Wurmus f5a724eb16
gnu: r-copyhelper: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.36.0.

Change-Id: I4726f8bf6c654b03ee4eb84ae697e7844d06e164
2024-05-08 12:53:16 +02:00
Ricardo Wurmus b53302805e
gnu: r-chromstardata: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.30.0.

Change-Id: I19aa49ac9d6499d2cea91b0d45fd04f10511b18f
2024-05-08 12:53:16 +02:00
Ricardo Wurmus cfb000d7e5
gnu: r-champdata: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.36.0.

Change-Id: I5387b2e3722e95911a5355cc56d83086ef205a4c
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 9e2ac92d2f
gnu: r-celldex: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.14.0.
[propagated-inputs]: Add r-alabaster-base, r-alabaster-matrix, r-alabaster-se, r-dbi,
r-gypsum, r-jsonlite, r-matrix, and r-rsqlite.

Change-Id: Iba166c14dae781e14a9762dc3480ece5ba12a802
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 4bcc9c836d
gnu: r-breastcancervdx: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-breastcancervdx): Update to 1.42.0.

Change-Id: I52de3659b7d07d03491091ef0de4ee5d305ec4eb
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 0e2bfbce09
gnu: r-breakpointrdata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.22.0.

Change-Id: I111126dae913bd01e5a3f87551108e6ba1733b89
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 9d1c351076
gnu: r-biscuiteerdata: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.18.0.

Change-Id: Icc31cf376b8f2f085cc045c02383164128f0f009
2024-05-08 12:53:16 +02:00
Ricardo Wurmus a4e4f9cf21
gnu: r-bodymaprat: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bodymaprat): Update to 1.20.0.

Change-Id: I8eb8b9e71cb1068e058b3e827096f25607ac5f01
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 62e7c74453
gnu: r-bladderbatch: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.42.0.

Change-Id: I49350259fef502e59368e4dc0894dcf52db33917
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 5b87013c93
gnu: r-bcellviper: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.40.0.

Change-Id: I5d7af04599d79147eaa2626aead238179e78cfde
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 6ac2448400
gnu: r-arrmdata: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.40.0.

Change-Id: I4695eec74200dd5deac20a71c020a9517e56f9a7
2024-05-08 12:53:15 +02:00
Ricardo Wurmus fa4635d3ad
gnu: r-aneufinderdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.32.0.

Change-Id: I91727bf7974078374a2bf9ca935b9df2ca60201f
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 4add20468d
gnu: r-adductdata: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.20.0.

Change-Id: I9f795cf931e90fa5f8331a5d3ffa855b56355ca6
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 378904acf5
gnu: r-pfam-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.19.1.

Change-Id: If95fa52bdfeb87ed606b9b7564ce73606a8616c8
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 7eabe6d69d
gnu: r-escape: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-escape): Update to 2.0.0.
[propagated-inputs]: Remove r-broom, r-data-table, r-matrix, and r-rlang; add r-aucell,
r-ggdist, r-ggpointdensity, and r-seuratobject.

Change-Id: I7fa2ea581a85a579feeac50e1e4b32ac4fa83d7b
2024-05-08 12:53:15 +02:00
Ricardo Wurmus a5729ea6ae
gnu: r-org-mm-eg-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.19.1.

Change-Id: I3ae90e3d60941caf901d49c91662f38900588a27
2024-05-08 12:53:15 +02:00
Ricardo Wurmus afb439ddf1
gnu: r-org-hs-eg-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.19.1.

Change-Id: Ib120639d743ba4abd0a129f968bd09a3f9c62775
2024-05-08 12:53:15 +02:00
Ricardo Wurmus b0cd3610d3
gnu: r-org-dr-eg-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.19.1.

Change-Id: Ib5d87389f017f2a4ed106ecaef01f82a689ad46e
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 1e295ff0d3
gnu: r-org-dm-eg-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.19.1.

Change-Id: I3c19de819fe694d9af11c4263132338340fccc47
2024-05-08 12:53:15 +02:00
Ricardo Wurmus 30be3f2fc8
gnu: r-org-ce-eg-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.19.1.

Change-Id: If5ae28c7f68194c7e6dc1b849932417ec1679ec9
2024-05-08 12:53:15 +02:00
Ricardo Wurmus d85a5a2047
gnu: r-go-db: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.19.1.

Change-Id: I894831796ac3121795d76df059b10680e9545ba0
2024-05-08 12:53:15 +02:00