31d372cd8a
gnu: khmer: Fix build with Python 3.8.
...
* gnu/packages/bioinformatics.scm (khmer)[source]: Remove trailing #T.
[arguments]: Remove trailing #T from build phases; add build phase
'python-3.8-compatibility.
2021-12-02 18:24:31 +01:00
32d5fb01f8
gnu: python-biom-format: Update to 2.1.10.
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* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.10.
[source]: Simplify snippet.
[arguments]: Add phase 'relax; remove trailing #T from other build phases.
[propagated-inputs]: Add python-anndata; replace python-pandas-0.25 with
python-pandas.
2021-12-02 18:02:07 +01:00
fab80c3672
gnu: Add trayer-srg.
...
* gnu/packages/wm.scm (trayer-srg): New variable.
Co-authored-by: Disseminate Dissent <disseminatedissent@protonmail.com>
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:44:31 +01:00
28ad55a59d
gnu: pardre: Update to 2.2.5.
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* gnu/packages/bioinformatics.scm (pardre): Update to 2.2.5.
[arguments]: Remove trailing #T and update comment about tests.
2021-12-02 15:40:46 +01:00
fc20fad6f7
gnu: pardre: Use C++ bindings for MPI.
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* gnu/packages/bioinformatics.scm (pardre)[inputs]: Replace openmpi with
openmpi-c++.
2021-12-02 15:40:46 +01:00
2d6be35ea2
gnu: Add openmpi-c++.
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* gnu/packages/mpi.scm (openmpi-c++): New variable.
2021-12-02 15:40:45 +01:00
df4f960cb8
gnu: Add libconfini.
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* gnu/packages/cpp.scm (libconfini): New variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:38:17 +01:00
2d92b3bbb6
gnu: shotcut: Update to 21.10.31.
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* gnu/packages/video.scm (shotcut): Update to 21.10.31.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
82e5a1b4c3
gnu: kdenlive: Update to 21.08.3.
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* gnu/packages/kde.scm (kdenlive): Update to 21.08.3.
[arguments]: Pass "-DBUILD_TESTING=off" to #:configure-flags as tests are
currently disabled.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
6fc0cfe1b5
gnu: mlt: Update to 7.2.0.
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* gnu/packages/video.scm (mlt): Update to 7.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:29:33 +01:00
e8d5dd5c9b
gnu: ccls: Update to 0.20210330.
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* gnu/packages/cpp.scm (ccls): Update to 0.20210330.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:26:05 +01:00
a4cc1ae446
gnu: guile-udev: Update to 0.2.0
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* gnu/packages/guile-xyz.scm (guile-udev): Update to 0.2.0.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-02 15:05:28 +01:00
46b73fd22d
gnu: python-ipython: Update to 7.20.0.
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* gnu/packages/python-xyz.scm (python-ipython): Update to 7.20.0.
2021-12-02 13:42:17 +01:00
5723503f9f
gnu: python-ipython: Remove trailing #T.
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* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Remove trailing #T
from build phases.
2021-12-02 13:42:17 +01:00
923a121751
gnu: yggdrasil: Simplify build phases.
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* gnu/packages/networking.scm (yggdrasil)[arguments]: Rewrite custom
'build phase reusing go-build-system 'build phase. Remove custom
'install phase.
2021-12-02 14:28:06 +02:00
d19e646c83
gnu: go-golang-zx2c4-com-wireguard: Fix downloading source.
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* gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard)[source]:
Adjust commit string in git-reference.
2021-12-02 14:13:27 +02:00
e0755470f8
gnu: go-github-com-vividcortex-ewma: Adjust import-path.
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* gnu/packages/golang.scm (go-github-com-vividcortex-ewma)[arguments]:
Adjust import-path to location other go packages expect it to be.
2021-12-02 14:12:31 +02:00
052f56e5a6
gnu: guix: Update to 8cc099b.
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* gnu/packages/package-management.scm (guix): Update to 8cc099b
2021-12-02 12:52:59 +01:00
a8fff63daa
gnu: Add python-mygene.
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* gnu/packages/bioinformatics.scm (python-mygene): New variable.
2021-12-02 11:57:28 +01:00
b15a525703
gnu: Add python-biothings-client.
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* gnu/packages/bioinformatics.scm (python-biothings-client): New variable.
2021-12-02 11:57:13 +01:00
c2c63a00de
gnu: Add r-scdblfinder.
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* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
2021-12-02 10:03:07 +01:00
bef86fed3e
Revert "gnu: godot: Update to 3.4."
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This reverts commit dd4365efa1https://debbugs.gnu.org/cgi/bugreport.cgi?bug=52233#20
2021-12-02 01:27:12 -05:00
934a246409
gnu: cl-tooter: Update to 1.0.0-3.ec97bee.
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* gnu/packages/lisp-xyz.scm (cl-tooter): Update to 1.0.0-3.ec97bee.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:12:58 -05:00
e9e2204897
gnu: cl-i18n: Update to 0.5.1-1.4216fe9.
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* gnu/packages/lisp-xyz.scm (cl-i18n): Update to 0.5.1-1.4216fe9.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:12:57 -05:00
dd4365efa1
gnu: godot: Update to 3.4.
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* gnu/packages/game-development.scm (godot): Update to 3.4.
[source]: Add new bundled dependencies to the origin snippet.
Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-02 00:02:47 -05:00
7a171235af
gnu: linux-libre 4.19: Update to 4.19.219.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.219.
(linux-libre-4.19-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
6f18f35297
gnu: linux-libre 5.4: Update to 5.4.163.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.163.
(linux-libre-5.4-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
f01588736c
gnu: linux-libre 5.10: Update to 5.10.83.
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* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.83.
(linux-libre-5.10-pristine-source): Update hash.
2021-12-01 18:43:05 -05:00
c3ec5eaa75
gnu: linux-libre: Update to 5.15.6.
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* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.6.
(linux-libre-5.15-pristine-source): Update hash.
2021-12-01 18:43:02 -05:00
d53679c531
gnu: Remove couger.
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This package has been moved to the Guix Past channel.
* gnu/packages/bioinformatics.scm (couger): Remove variable.
2021-12-02 00:32:12 +01:00
cd40978a4b
gnu: randomjungle: Fix compatibility errors.
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* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
2021-12-02 00:32:12 +01:00
205a65839a
news: Add entry about Icedove 91.
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* etc/news.scm: New entry.
2021-12-01 22:52:02 +01:00
a63231003e
gnu: icecat: Remove leftovers of release 78.
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No longer required as icedove is now based on the 91 branch.
* gnu/packages/gnuzilla.scm (mozilla-78-compare-locales): Remove.
(all-mozilla-78-locales): Remove.
(%icecat-78-version): Remove.
(icecat-78-source): Remove.
2021-12-01 22:07:00 +01:00
52cb5cf5b8
gnu: icedove: Update to 91.3.2.
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The profile folder moved from `~/.icedove` to `~/.thunderbird`. You may
need to migrate (copy) your profile over.
* gnu/packages/gnuzilla.scm (icedove): Update to 91.3.2.
[source]: Switch back to icecat-source.
[arguments]: `obj-x86_64-pc-linux-gnu` folder is now generated during
build, so it can't deleted in front. Remove surounding `'` from
MOZ_DEDICATED_PROFILES to follow source code. MOZ_APP_BASENAME and
MOZ_APP_DISPLAYNAME are no longer set in `comm/mail/confvars.sh`. Update
path of `customizeToolbar.js`.
Delete `'bootstrap` phase and no longer set AUTOCONF variable as the
autoconf build part was removed. Set MACH_USE_SYSTEM_PYTHON and
MOZ_APP_NAME, the latter is the binary name.
`--enable-calendar` flag got removed. Use bundled NSS until
core-updates merge.
[inputs]: Update to `icu4c-69` and `nspr-4.32`. Use bundled NSS for now.
[native-inputs]: Switch to comm-esr91 branch. Remove autoconf, add m4.
Update rust and cargo to 1.51. Use `rust-cbindgen-0.19`.
2021-12-01 22:07:00 +01:00
f1a2e90409
gnu: Add nspr@4.32.
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Required for icecat/icedove 91.
* gnu/packages/nss.scm (nspr-4.32): New variable.
2021-12-01 22:06:54 +01:00
d7d7b57965
gnu: emacs-citar: Remove unnecessary input.
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* gnu/packages/emacs-xyz.scm (emacs-citar)[propagated-inputs]: Remove emacs-helm-bibtex.
2021-12-01 22:00:45 +01:00
2b08cc968b
gnu: bullet: Update to 3.17.
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* gnu/packages/game-development.scm (bullet): Update to 3.17.
[arguments]<#:configure-flags>: Disable access to third-party libs.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 21:54:41 +01:00
c7c4f80881
gnu: Update Trezor support.
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* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Apply previous removal.
* gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4.
[source]: Remove now useless patch.
(python-mnemonic): Update to 0.20.
(python-trezor): Update to 0.12.4
(trezor-agent): Update to 0.11.0-1.
[source]: Add file-name field.
[arguments]: Remove trailing #T in phases.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 18:05:26 +01:00
508200d66a
gnu: python-daemon: Update to 2.3.0.
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* gnu/packages/python-xyz.scm (python-daemon): Update to 2.3.0.
[native-inputs]: Add python-coverage and python-twine.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 17:58:33 +01:00
8cc099b425
gnu: openssh: Add support for ecdsa-sk, ed25519-sk ssh keys.
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* gnu/packages/ssh.scm (openssh)[inputs]: Add LIBFIDO2.
[arguments]: Pass "--with-security-key-builtin".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:53:27 +01:00
3aaef047a6
gnu: Add libfido2.
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* gnu/packages/security-token.scm (libfido2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:53:27 +01:00
083a710cbb
gnu: Add libcbor.
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* gnu/packages/compression.scm (libcbor): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:53:27 +01:00
b5d0029771
gnu: Add vim-nerdtree.
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* gnu/packages/vim.scm (vim-nerdtree): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:53:27 +01:00
39f4ef59ff
build-system: haskell: Add ‘hackage-uri’ procedure.
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* guix/build-system/haskell (hackage-uri): New procedure.
* guix/import/hackage.scm (hackage-module->sexp, latest-release): Use it.
* tests/hackage.scm (match-ghc-foo, match-ghc-foo-6, match-ghc-foo-revision,
match-ghc-foo-import): Adjust accordingly.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:53:25 +01:00
a955e4d7f6
gnu: Add smplayer.
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* gnu/packages/video.scm (smplayer): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:51:38 +01:00
5ff34d596d
gnu: Add python-codespell.
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* gnu/packages/python-xyz.scm (python-codespell): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:51:37 +01:00
a82e9f45fd
installer: Make LUKS2 the default format for encrypted devices
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* gnu/installer/parted.scm (luks-format-and-open): Change it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:51:37 +01:00
4c5f970e8a
doc: Document LUKS2 GRUB support and shortcomings
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* doc/guix.texi (Keyboard Layout, Networking, and Partitioning)[Disk
Partitioning]: Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:51:37 +01:00
adce91a3ec
gnu: system: Add LUKS2 support for the root file system.
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* gnu/bootloader/grub.scm (grub-configuration-file): Add 'insmod
luks2'.
* gnu/system/mapped-devices.scm (open-luks-device): Create
'/run/cryptsetup/' directory.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-01 17:51:37 +01:00
9f371f23eb
inferior: 'cached-channel-instance' does not cache unauthenticated instances.
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The comment saying that caching is fine even when AUTHENTICATE? is false
was true in commit 838ac881ec7cfd789150
2021-12-01 17:51:33 +01:00
Ricardo Wurmus
jgart
Liliana Marie Prikler
Vinicius Monego
Artyom V. Poptsov
Efraim Flashner
Ludovic Courtès
Leo Famulari
cage
Andy Tai
Jonathan Brielmaier
Nicolas Goaziou
Attila Lendvai
Ahmad Jarara
Foo Chuan Wei
Xinglu Chen
Felix Gruber
Josselin Poiret