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Author SHA1 Message Date
Tobias Geerinckx-Rice d8006740b9
gnu: Remove packages deprecated for over a year.
* gnu/packages/admin.scm (intel-gpu-tools): Remove variable.
* gnu/packages/algebra.scm (giac-xcas): Likewise.
2020-03-29 01:24:10 +01:00
Tobias Geerinckx-Rice 8c9dcdea0a
gnu: igraph: Update to 0.8.1.
* gnu/packages/graph.scm (igraph): Update to 0.8.1.
2020-03-29 01:24:10 +01:00
Tobias Geerinckx-Rice 1b36f75867
gnu: Order module imports in (gnu packages admin).
* gnu/packages/admin.scm: Order module imports alphabetically.
2020-03-29 01:24:09 +01:00
Tobias Geerinckx-Rice a48cf78a8e
gnu: thefuck: Update to 3.30.
* gnu/packages/admin.scm (thefuck): Update to 3.30.
[native-inputs]: Add go.
2020-03-29 01:24:09 +01:00
Tobias Geerinckx-Rice e3fdc0197f
gnu: light: Update to 1.2.2.
* gnu/packages/linux.scm (light): Update to 1.2.2.
2020-03-29 01:24:09 +01:00
Tobias Geerinckx-Rice 75083257ac
gnu: acpica: Update to 20200326.
* gnu/packages/admin.scm (acpica): Update to 20200326.
2020-03-29 01:24:09 +01:00
Vincent Legoll 62b9ad19e3
gnu: Add wol.
* gnu/packages/networking.scm (wol): New public variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-29 00:02:46 +01:00
Nicolas Goaziou 735a8d997a
gnu: emacs-csv: Use proper Texinfo markup in description.
* gnu/packages/emacs-xyz.scm (emacs-csv)[description]: Use proper Texinfo
markup.
2020-03-28 21:33:16 +01:00
Amin Bandali c2cf286c62
Update email address and Savannah handle for Amin Bandali.
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
2020-03-28 16:30:07 -04:00
Nicolas Goaziou 255fb17b25
gnu: armadillo: Fix typo in description.
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
2020-03-28 21:27:33 +01:00
Marius Bakke 043c3d6499
gnu: KOrganizer: Fix typo in description.
* gnu/packages/kde-pim.scm (korganizer)[description]: clanedaring -> calendaring.
2020-03-28 20:03:50 +01:00
Efraim Flashner 619edce5cd
gnu: youtube-viewer: Add missing comment.
This is a follow-up to 315b98b9eb.

* gnu/packages/video.scm (youtube-viewer)[arguments]: Add comment
explaining why we don't install the gtk3 variant.
2020-03-28 21:07:08 +03:00
Leo Famulari e4257138fe
Revert "gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default."
This commit didn't work:

https://issues.guix.gnu.org/issue/24076#13

This reverts commit c7af9d0b5e.
2020-03-28 11:50:41 -04:00
Alex Griffin 54cf5e2a35
gnu: pagekite: Update to 1.5.0.200327.
* gnu/packages/networking.scm (pagekite): Update to 1.5.0.200327.
2020-03-28 09:08:16 -05:00
Alex Griffin 27d8b9d976
gnu: python-socksipychain: Update to 2.1.1-1.eb5ee87.
* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.1-1.eb5ee87.
2020-03-28 09:07:06 -05:00
Pierre Neidhardt aa7f3ec0e0
gnu: sbcl-cl-containers: Update to 20200212.
* gnu/packages/lisp-xyz.scm (sbcl-cl-containers): Update to 20200212.
2020-03-28 10:39:20 +01:00
Christopher Baines 24b5d8f745
gnu: lollypop: Update to 1.2.32.
* gnu/packages/gnome.scm (lollypop): Update to 1.2.32.
2020-03-28 09:17:59 +00:00
Ricardo Wurmus 27c3afa940
gnu: r-curl: Fix patch to respect CURL_CA_BUNDLE.
Fixes <https://debbugs.gnu.org/40262>.

* gnu/packages/cran.scm (r-curl)[arguments]: Ensure CURLOPT_CAINFO actually
gets set.
2020-03-27 23:38:31 +01:00
Nicolas Goaziou 9fad055023
gnu: grammalecte: Update to 1.8.0.
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.8.0.
2020-03-27 23:37:20 +01:00
Nicolas Goaziou 734eb7d79e
gnu: fet: Update to 5.44.0.
* gnu/packages/education.scm (fet): Update to 5.44.0.
2020-03-27 23:34:37 +01:00
Nicolas Goaziou 57be2cadf8
gnu: emacs-flycheck-grammalecte: Update to 1.0.
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Update to 1.0.
2020-03-27 23:32:11 +01:00
Michael Rohleder f71bce9bb2
gnu: tmate: Update to 2.4.0.
* gnu/packages/terminals.scm (tmate): Update to 2.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-27 16:49:37 -04:00
Michael Rohleder 816bce684c
gnu: Neofetch: Update to 7.0.0.
* gnu/packages/admin.scm (neofetch): Update to 7.0.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-27 16:42:26 -04:00
Ludovic Courtès 7cb77b7896
gnu: mailutils: Update to 3.9.
* gnu/packages/mail.scm (mailutils): Update to 3.9.
[arguments]: In 'prepare-test-suite' phase, adjust name of the mda
'testsuite' files.
2020-03-27 19:09:30 +01:00
Ludovic Courtès 3139739802
gnu: guile-next: Update to 3.0.2.
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2.
* gnu/packages/patches/guile-3.0-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-27 19:09:30 +01:00
Pierre Neidhardt eb5341c235
gnu: Add trivial-package-local-nicknames.
* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames,
  sbcl-trivial-package-local-nicknames): New variables.
2020-03-27 18:40:21 +01:00
Ricardo Wurmus bc3fda5d2b
services/nfs: Replace nfs-version with nfs-versions.
Instead of accepting a string for just one protocol version accept a list of
supported versions.

* gnu/services/nfs.scm (<nfs-configuration>)[nfs-version]: Remove field and
replace...
[nfs-versions]: ...with this new field.
(nfs-shepherd-services): Pass as many "--nfs-version" options as there are
supported versions.
* doc/guix.texi (Network File System): Document nfs-versions.
2020-03-27 15:30:44 +01:00
Jakub Kądziołka 9483782a61
gnu: rust: Add 1.39
* gnu/packages/rust.scm (rust-1.39): New variable.
  (%cargo-reference-hash): Add a comment explaining the role of the
  variable.
2020-03-27 14:28:11 +01:00
Jakub Kądziołka 444bc2ddf2
gnu: rust: Add 1.38
All packages are still built with rustc 1.37, but users will see rustc
1.38 in their profiles, and packages that require newer compiler
versions will be possible to add.

* gnu/packages/rust.scm (rust-1.31): Factor out the
  patch-command-exec-tests phase to a separate procedure.
  (patch-command-exec-tests-phase): New procedure.
  (rust): Rename to rust-1.37, make rust an alias.
  (rust-1.38): New variable.
2020-03-27 14:28:06 +01:00
Nicolas Goaziou 1a7247c629
gnu: asymptote: Update to 2.65.
* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
2020-03-27 12:20:35 +01:00
Ricardo Wurmus 2ba5253044
gnu: r-multiassayexperiment: Update to 1.12.6.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 37732212a3
gnu: r-locfit: Update to 1.5-9.4.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus c99880320d
gnu: r-class: Update to 7.3-16.
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 3345157fa6
gnu: r-xgboost: Update to 1.0.0.2.
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 76d7ce4f45
gnu: r-rjava: Update to 0.9-12.
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 84b7c4aa17
gnu: r-sf: Update to 0.9-0.
* gnu/packages/cran.scm (r-sf): Update to 0.9-0.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 498c887a96
gnu: r-bayestestr: Update to 0.5.3.
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 9c189913e9
gnu: r-hdf5r: Update to 1.3.2.
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
2020-03-27 11:21:13 +01:00
Ricardo Wurmus 6232a36291
gnu: r-ggally: Update to 1.5.0.
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
2020-03-27 11:21:13 +01:00
Christopher Baines 0a76a4e073
gnu: guix-data-service: Update to 0.0.1-19.d1c243f.
These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).

* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
2020-03-26 22:51:36 +00:00
Lars-Dominik Braun 01d5f2c5cd
gnu: Add python-json5.
* gnu/packages/python-xyz.scm (python-json5): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
Lars-Dominik Braun aefcfecd84
gnu: Add python-pytest-check-links.
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26 23:45:41 +01:00
Ludovic Courtès be6520e6a5
vm: Distinguish between success and failure of the guest code.
Fixes <https://bugs.gnu.org/34276>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.

* gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]:
Produce '/xchg/.exit-status' file upon success.
* gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status'
once QEMU has completed and respond accordingly.
2020-03-26 23:45:41 +01:00
Jakub Kądziołka 60eee3e6de
gnu: Add ROPgadget.
* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
2020-03-26 22:53:02 +01:00
Björn Höfling eebaed2b76
gnu: java-tomcat: Update to 8.5.53.
This fixes CVE-2020-1938 ("Ghostcat").

* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
2020-03-26 21:39:49 +01:00
Marius Bakke 3089b70d76
gnu: icu4c: Explicitly add patch flags in replacement package.
This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.

* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
2020-03-26 21:15:08 +01:00
Marius Bakke 9ea9ff6b0f
gnu: help2man: Update to 1.47.13.
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
2020-03-26 20:20:48 +01:00
Alexandros Theodotou 9b0c95cc68
gnu: Add python-pywinrm.
* gnu/packages/python-xyz.scm (python-pywinrm): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou c596359729
gnu: Add python-requests_ntlm.
* gnu/packages/python-web.scm (python-requests_ntlm): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou 163997c961
gnu: Add python-ntlm-auth.
* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Alexandros Theodotou f8dcdf2b36
gnu: Add python-kerberos.
* gnu/packages/python-crypto.scm (python-kerberos): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26 19:14:44 +00:00
Roel Janssen 79c395dde3
gnu: Update sambamba to 0.7.1.
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1;
  Remove unneeded undead input.
2020-03-26 18:08:27 +01:00
Naga Malleswari db47adb0c7
gnu: Add 7kaa.
* gnu/packages/games.scm (7kaa): New variable.
2020-03-26 15:55:02 +01:00
Efraim Flashner 50e45d8629
gnu: boinc-client: Update to 7.16.5.
* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
2020-03-26 14:08:24 +02:00
Efraim Flashner f87d594238
gnu: boinc-server: Fix build.
* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl
with openssl-1.0, mariadb with mariadb:dev.
2020-03-26 14:08:24 +02:00
Ludovic Courtès c7af9d0b5e
gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.
Fixes <https://bugs.gnu.org/24076>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/patches/gnupg-default-pinentry.patch: New file.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-03-26 13:07:19 +01:00
Efraim Flashner 315b98b9eb
gnu: youtube-viewer: Don't build gtk3 front-end.
* gnu/packages/video.scm (youtube-viewer)[arguments]: Update
module-build-flags to only build gtk2 front-end.
2020-03-26 12:56:10 +02:00
Efraim Flashner b5a26299f7
gnu: youtube-viewer: Update to 3.7.5.
* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5.
[inputs]: Add perl-json-xs.
2020-03-26 12:56:07 +02:00
Mathieu Othacehe b03ebdbc7c
tests: install: Add %test-gui-installed-desktop-os-encrypted.
* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services,
(installation-target-os-for-gui-tests): new procedure,
(installation-target-desktop-os-for-gui-tests): new procedure,
(guided-installation-test): add target-os and desktop? arguments. Use
target-os instead of the previous os variable. Pass desktop? argument to
gui-test-program.
(%test-gui-installed-os): Adapt accordingly,
(%test-gui-installed-os-encrypted): ditto,
(%test-gui-installed-desktop-os-encrypted): new exported variable.
2020-03-26 11:53:50 +01:00
Mathieu Othacehe 7a1a10dbd4
installer: tests: Use a filter to select desktop-environments.
* gnu/installer/tests.scm (choose-services): Turn desktop-environments list
into a choose-desktop-environment procedure. This way, it is easier to select
all desktop-environments or none, in the same way as choose-network-service?
and choose-network-management-tool? arguments.
2020-03-26 11:53:50 +01:00
Pierre Neidhardt 62c27e09f0
gnu: emacs-helm-exwm: Update to 0.0.2.
* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
2020-03-26 09:00:46 +01:00
Ricardo Wurmus 90fb592321
gnu: r-argon2: Fix case in synopsis and use full sentence in description.
* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case.
[description]: Use full sentence.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus 5c3902a762
gnu: r-getpass: Change case in synopsis and adjust indentation.
* gnu/packages/cran.scm (r-getpass): Adjust indentation.
[synopsis]: Do not capitalize all words.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus f03e62c12d
gnu: r-remoter: Fix indentation.
* gnu/packages/cran.scm (r-remoter): Fix indentation.
2020-03-26 08:28:53 +01:00
Ricardo Wurmus 9bde1b1348
gnu: r-remoter: Use lower case in the synopsis.
* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
2020-03-26 08:28:41 +01:00
Vagrant Cascadian 730a4b10fa
gnu: linux-libre-5.4-source: Add patch to support pinebook pro.
* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/linux (linux-libre-5.4-source): Add patch.
2020-03-25 18:59:25 -07:00
Mark H Weaver 2a57b72251
gnu: linux-libre: Update deblob scripts.
* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
2020-03-25 20:39:05 -04:00
Mark H Weaver 5cc6271d22
gnu: linux-libre: Update to 5.4.28.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28.
(linux-libre-5.4-pristine-source): Update hash.
2020-03-25 20:37:38 -04:00
Mark H Weaver 1d777c7837
gnu: linux-libre@4.19: Update to 4.19.113.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-25 20:36:25 -04:00
Leo Famulari 7d57a190f6
gnu: icu4c: Fix CVE-2020-10531.
* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
2020-03-25 17:53:59 -04:00
Todor Kondić 0c549393b9
gnu: Add r-remoter.
* gnu/packages/cran.scm (r-remoter): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:46:02 -04:00
Todor Kondić 6ad80b2a6b
gnu: Add r-getpass.
* gnu/packages/cran.scm (r-getpass): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:46:02 -04:00
Todor Kondić 49a8ef8ae1
gnu: Add r-argon2.
* gnu/packages/cran.scm (r-argon2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-25 15:45:54 -04:00
Nicolas Goaziou 0557618dbe
gnu: Add emacs-chronometrist.
* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable.
2020-03-25 17:34:38 +01:00
Ricardo Wurmus 8b19fa51a4
gnu: abseil-cpp: Update to 20200225.1.
* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1.
2020-03-25 16:29:26 +01:00
Ludovic Courtès 98e9ed8a3f
gnu: gnu-pw-mgr: Build reproducibly.
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove
AUTOGEN so that man pages are not regenerated with a fresh date.
2020-03-25 16:02:53 +01:00
Ricardo Wurmus eb019af8d8
tests/nfs: Fix use of WAIT-FOR-FILE.
* gnu/tests/nfs.scm ("nfs services are running"): Pass marionette to
WAIT-FOR-FILE.
2020-03-25 14:17:24 +01:00
Ricardo Wurmus b3c083b985
services/nfs: Mount nfsd pseudo file system.
* gnu/services/nfs.scm (nfs-shepherd-services): Add shepherd-service providing
/proc/fs/nfsd and make other shepherd services require it.
2020-03-25 14:17:24 +01:00
Guillaume Le Vaillant 620c756443
gnu: electron-cash: Update to 4.0.14.
* gnu/packages/finance.scm (electron-cash): Update to 4.0.14.
2020-03-25 11:09:45 +01:00
Ricardo Wurmus 2fcd2e1a5f
gnu: r-shiny: Add missing inputs.
* gnu/packages/cran.scm (r-shiny)[propagated-inputs]: Add r-later, r-promises,
r-rlang, and r-withr.
[native-inputs]: Add gfortran.
2020-03-25 09:40:05 +01:00
Ricardo Wurmus 51d1a7a2ef
gnu: r-mast: Add r-knitr to native inputs.
* gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
2020-03-25 09:40:05 +01:00
Tanguy Le Carrour 97b1366d49
gnu: poetry: Update to 1.0.5.
* gnu/packages/python-xyz.scm (poetry): Update to 1.0.5.
[propagated-inputs] Add python-clikit, python-importlib-metadata,
python-keyring, and python-pexpect. Remove python-msgpack and python-glob2.
[home-page] Update URL.
[arguments] Remove 'patch-setup-py' phase, and adjust required versions of
keyring, pyrsistent and importlib-metadata.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:16:50 -04:00
Tanguy Le Carrour c298118860
gnu: python-cachy: Update to 0.3.0.
* gnu/packages/python-xyz.scm (python-cachy): Update to 0.3.0.
[arguments]: Replace the 'check' phase.
[native-inputs]: Add memcached and python-pifpaf.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:22 -04:00
Tanguy Le Carrour f5879f158c
gnu: Add python-pifpaf.
* gnu/packages/python-xyz.scm (python-pifpaf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:22 -04:00
Tanguy Le Carrour 20c9df4e46
gnu: Add python-daiquiri.
* gnu/packages/python-xyz.scm (python-daiquiri): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour 3b3edfa8e3
gnu: Add python-json-logger.
* gnu/packages/python-xyz.scm (python-json-logger): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour f6c784806e
gnu: Add python-xattr.
* gnu/packages/python-xyz.scm (python-xattr): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour 1655e7be78
gnu: python-fakeredis: Update to 1.2.1.
* gnu/packages/databases.scm (python-fakeredis): Update to 1.2.1.
[propagated-inputs]: Add python-sortedcontainers.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:21 -04:00
Tanguy Le Carrour eac978eef8
gnu: python-clikit: Update to 0.4.2.
* gnu/packages/python-xyz.scm (python-clikit): Update to 0.4.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 01e3044200
gnu: python-sortedcontainers: Add missing propagated-inputs.
* gnu/packages/python-xyz.scm (python-sortedcontainers):
[propagated-inputs] Add python-appdirs, python-distlib, python-filelock,
python-importlib-metadata and python-six.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 6dcbd20afa
gnu: python-cachecontrol: Add missing propagated-input.
* gnu/packages/python-web.scm (python-cachecontrol):
[propagated-inputs]: Add python-msgpack.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 66ab2f5e3a
gnu: python-msgpack: Update to 1.0.0.
* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.0.
(python-msgpack-transitional)[version,source]: New fields to avoid updating this
package.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:20 -04:00
Tanguy Le Carrour 67c8b6448e
gnu: python-pastel: Update to 0.2.0.
* gnu/packages/graphics.scm (python-pastel): Update to 0.2.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
Tanguy Le Carrour a356d1b68d
gnu: python-jsonschema: Update to 3.2.0.
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0.
[propagated-inputs]: Add python-importlib-metadata.
[arguments]: Use add-installed-pythonpath to make a test pass.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
Tanguy Le Carrour 2c15cb5898
gnu: python-pexpect: Update to 4.8.0.
* gnu/packages/python-xyz.scm (python-pexpect): Update to 4.8.0.
[arguments]: Disable failing test.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 17:10:19 -04:00
Paul Garlick 5e44011bfb
gnu: perl-mail-sendmail: Add line above definition.
* gnu/packages/perl.scm (perl-mail-sendmail): Add line.
2020-03-24 20:08:05 +00:00
Paul Garlick 25022bfd3a
gnu: Add perl-mail-sendmail.
* gnu/packages/perl.scm (perl-mail-sendmail): New variable.
2020-03-24 19:59:43 +00:00
Josh Marshall b14c234c0d
gnu: Add Docusign API Python client.
* gnu/packages/python-xyz.scm (python-docusign-esign): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-24 15:36:20 -04:00
Ludovic Courtès 72a5cc5358
gnu: automake: Add version 1.16.2.
* gnu/packages/autotools.scm (automake-1.16.2): New variable.
2020-03-24 18:03:18 +01:00
Martin Becze b488b64a3e
gnu: Add guile3.0-semver.
* gnu/packages/guile-xyz.scm (guile3.0-semver): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-24 15:44:45 +01:00
Efraim Flashner 08d5341b1f
gnu: nano: Update to 4.9.
* gnu/packages/nano.scm (nano): Update to 4.9.
2020-03-24 15:47:58 +02:00
Guillaume Le Vaillant 151f3d416c
gnu: Add qgis.
* gnu/packages/geo.scm (qgis): New variable.

Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz>
Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
2020-03-24 11:42:41 +01:00
Guillaume Le Vaillant f7ac2fe1ce
gnu: Add saga.
* gnu/packages/geo.scm (saga): New variable.
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant 9fce591479
gnu: Add grass.
* gnu/packages/geo.scm (grass): New variable.
2020-03-24 11:42:40 +01:00
Guillaume Le Vaillant efcb05083f
gnu: Add python-owslib.
* gnu/packages/python-xyz.scm (python-owslib): New variable.
2020-03-24 11:42:40 +01:00
Ricardo Wurmus b0d1da986b
gnu: r-harmony: Update to 0.1.
* gnu/packages/cran.scm (r-harmony): Update to 0.1.
[native-inputs]: Add autoconf.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 8ff6386491
gnu: r-shiny: Update to 1.4.0.2.
* gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 5d45d71170
gnu: r-multiassayexperiment: Update to 1.12.5.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 1f2f01aed5
gnu: r-bigpint: Update to 1.2.2.
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus 4bcb38c801
gnu: r-biosigner: Update to 1.14.4.
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus d5951dc43a
gnu: r-gosemsim: Update to 2.12.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:01 +01:00
Ricardo Wurmus c649d31957
gnu: r-tximport: Update to 1.14.2.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus c10bef9bd3
gnu: r-caret: Update to 6.0-86.
* gnu/packages/cran.scm (r-caret): Update to 6.0-86.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 1e40a27465
gnu: r-batchtools: Update to 0.9.13.
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 6005efa40f
gnu: r-mcmc: Update to 0.9-7.
* gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d3836473de
gnu: r-proc: Update to 1.16.2.
* gnu/packages/cran.scm (r-proc): Update to 1.16.2.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus c5036a4f39
gnu: r-xgboost: Update to 1.0.0.1.
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.1.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 2f445f0da3
gnu: r-radiant-data: Update to 1.3.4.
* gnu/packages/cran.scm (r-radiant-data): Update to 1.3.4.
[propagated-inputs]: Remove r-gridextra; add r-mass, r-patchwork, and
r-randomizr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus ff248f41cb
gnu: r-patchwork: Update to 1.0.0.
* gnu/packages/cran.scm (r-patchwork): Update to 1.0.0.
[source]: Fetch from CRAN.
[native-inputs]: Add r-knitr.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d8dc2a7c1e
gnu: r-igraph: Update to 1.2.5.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus f7a21df523
gnu: r-robustbase: Update to 0.93-6.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-6.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 7e349066e6
gnu: r-hmisc: Update to 4.4-0.
* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-0.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus 670cbe2c3c
gnu: r-pkgmaker: Update to 0.31.1.
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31.1.
2020-03-24 11:06:00 +01:00
Ricardo Wurmus d16a4d1f96
gnu: r-dt: Update to 0.13.
* gnu/packages/statistics.scm (r-dt): Update to 0.13.
[native-inputs]: Add r-knitr.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus f871696911
gnu: r-locfit: Update to 1.5-9.2.
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.2.
2020-03-24 11:05:59 +01:00
Ricardo Wurmus e0d6a7da74
gnu: Add r-randomizr.
* gnu/packages/cran.scm (r-randomizr): New variable.
2020-03-24 11:05:59 +01:00
Guillaume Le Vaillant 47a2306415
gnu: sbcl: Increase maximum heap size to 2Gb.
* gnu/packages/lisp.scm (sbcl)[arguments]: Add the "--dynamic-space-size=2Gb"
  option in the build phase.
2020-03-24 09:31:43 +01:00
Michael Rohleder 0f96fd6454
gnu: dialog: Update to 1.3-20200228.
* gnu/packages/ncurses.scm (dialog): Update to 1.3-20200228.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-23 21:17:55 -04:00
Leo Famulari aae5f89db0
gnu: Git: Update to 2.26.0.
* gnu/packages/version-control.scm (git): Update to 2.26.0.
[arguments]: Adjust the 'install-credential-netrc' phase to upstream changes.
2020-03-23 21:17:46 -04:00
Mathieu Othacehe acd595c237
Revert "gnu: youtube-dl: Add 'ffmpeg' as input."
This reverts commit 4233e74b39.
2020-03-23 21:51:25 +01:00
Leo Famulari a11237e40a
gnu: Mutt: Update to 1.13.4.
* gnu/packages/mail.scm (mutt): Update to 1.13.4.
[source]: Prefer HTTPS URL and replace FTP URL with HTTP.
2020-03-23 15:53:11 -04:00
Alexandros Theodotou 0a6f68982b
gnu: sord: Add pcre to inputs.
* gnu/packages/rdf.scm (sord)[inputs]: Add pcre needed for sord_validate.
2020-03-23 20:48:49 +01:00
Brice Waegeneire 7884fc434f
gnu: youtube-dl: Add zsh completion.
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
install-completion.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 19:02:46 +01:00
Brice Waegeneire 4233e74b39
gnu: youtube-dl: Add 'ffmpeg' as input.
* gnu/packages/video.scm (youtube-dl)[arguments]: Add phase
wrap-executable.
[inputs]: Add ffmpeg.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 19:02:44 +01:00
Brice Waegeneire a9f2c210f3
system: Export 'operating-system-kernel-loadable-modules'.
* gnu/system.scm: Export 'operating-system-kernel-loadable-modules'.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-23 18:52:31 +01:00
Maxim Cournoyer f2c698bd3e
gnu: emacs-lua-mode: Update to 20191204.
* (emacs-lua-mode): Update to 20191204.
2020-03-23 13:49:39 -04:00
Maxim Cournoyer 09c09c4c7c
gnu: emacs-ert-runner: Update to 0.8.0.
* (emacs-ert-runner): Update to 0.8.0.
2020-03-23 13:49:38 -04:00
Maxim Cournoyer 80168c4b5b
gnu: emacs-dash: Update to 2.17.0.
* (emacs-dash): Update to 2.17.0.
2020-03-23 13:49:38 -04:00
Mathieu Othacehe f9b6f75d1c
installer: Fix cow-store umount issue.
* gnu/installer/final.scm (kill-cow-users): Ignore exception that could be
raised if a process disappears between reading its pid and its maps file.
2020-03-23 18:46:40 +01:00
Tobias Geerinckx-Rice 5490b2c733
gnu: parallel: Update to 20200322.
* gnu/packages/parallel.scm (parallel): Update to 20200322.
2020-03-23 18:35:27 +01:00
Tobias Geerinckx-Rice c2d468a111
gnu: extremetuxracer: Update to 0.8.0.
* gnu/packages/games.scm (extremetuxracer): Update to 0.8.0.
2020-03-23 18:35:27 +01:00
Alexandros Theodotou d3e7282ec3
gnu: Add zlfo.
* gnu/packages/music.scm (zlfo): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-23 15:39:02 +01:00
Alexandros Theodotou 360ebe50b5
gnu: Add ztoolkit-rsvg.
* gnu/packages/audio.scm (ztoolkit-rsvg): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> [with modifications]
2020-03-23 15:39:01 +01:00
Alexandros Theodotou 2f4faccc6f
gnu: Add ztoolkit.
* gnu/packages/audio.scm (ztoolkit): New variable.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-03-23 15:39:00 +01:00
Roel Janssen 7ff6395100
gnu: Add circos.
* gnu/local.mk: Register circos-remove-findbin.patch.
* gnu/packages/patches/circos-remove-findbin.patch: New file.
* gnu/packages/perl.scm: New variable.
2020-03-23 11:42:36 +01:00
Alexandros Theodotou 591faabd8c
gnu: Add python-gcovr.
* gnu/packages/python-xyz.scm (python-gcovr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-23 10:48:18 +01:00
Alexandros Theodotou 670da39888
gnu: Add lv2toweb.
* gnu/packages/audio.scm (lv2toweb): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-23 10:48:18 +01:00
Ludovic Courtès 8bc745052e
machine: ssh: Better report missing initrd modules.
* gnu/machine/ssh.scm (machine-check-initrd-modules): Improve message
upon module mismatch.
2020-03-23 10:48:17 +01:00
Ludovic Courtès ea6e2299b4
machine: ssh: Make sanity checks in a single round trip.
* gnu/machine/ssh.scm (<remote-assertion>): New record type.
(remote-let): New macro.
(machine-check-file-system-availability): Rewrite to use 'remote-let'
instead of 'mlet' and 'machine-remote-eval'.
(machine-check-initrd-modules): Likewise.
(machine-check-building-for-appropriate-system): Make non-monadic.
(check-deployment-sanity): Rewrite to gather all the assertions as a
single gexp and pass it to 'machine-remote-eval'.
2020-03-23 10:48:17 +01:00
Leo Famulari 1eb27d5cae
Re-order the armhf linux-libre kernel packages to fix the build.
This is a followup to commit 37f8c50cdc.

Previously, building Guix crashed like this:

------
In ice-9/eval.scm:
    619:8  4 (_ #f)
   626:19  3 (_ #<directory (gnu packages linux) 7fcf3e526c80>)
    159:9  2 (_ #<directory (gnu packages linux) 7fcf3e526c80>)
   223:20  1 (proc #<directory (gnu packages linux) 7fcf3e526c80>)
In unknown file:
           0 (%resolve-variable (7 . linux-libre-arm-generic) #<directory (gnu packages linux) 7fcf3e526c80>)

ERROR: In procedure %resolve-variable:
error: linux-libre-arm-generic: unbound variable
------

* gnu/packages/linux.scm (linux-libre-arm-veyron): Move after
linux-libre-arm-generic.
2020-03-23 01:46:48 -04:00
Vagrant Cascadian 058e96c59f
gnu: Add linux-libre-arm64-generic.
* gnu/packages/linux (linux-libre-arm64-generic): New variable.
2020-03-22 20:55:42 -07:00
Vagrant Cascadian 37f8c50cdc
gnu: linux-libre-arm-veyron: Deprecate package.
* gnu/packages/linux (linux-libre-arm-veyron): Mark as deprecated package.
  (kernel-config-veyron): Remove obsolete function.
* gnu/system/examples/asus-c201.tmpl: Update to use linux-libre-arm-generic.
* gnu/packages/aux-files/linux-libre/5.4-arm-veyron.conf: Delete file.
* Makefile.am (AUX_FILES): Update accordingly.
2020-03-22 20:55:37 -07:00
Maxim Cournoyer 4ef89d884d
gnu: emacs-elpy: Update to 1.32.0.
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.32.0.
[phases]{fake-virtualenv}: Rename to 'do-not-use-virtualenv.  Use the new
ELPY_TEST_DONT_USE_VIRTUALENV environment variable to skip tests using
virtualenv, and set the elpy-rpc-virtualenv-path default value to 'system so
that a virtualenv is not needed.
[native-inputs]: Move the Python dependencies to...
[propagated] ...here.  This is so that Elpy doesn't nag users with fetching
those from PyPI.   Add python-rope.

Fixes <https://bugs.gnu.org/40079>.
Reported-by: sirgazil <sirgazil@zoho.com>
2020-03-22 21:17:39 -04:00
Maxim Cournoyer 4cbd60698d
gnu: emacs: Patch references to /bin/sh.
When attempting to run ert-runner in the build side environment where /bin/sh
doesn't exist as part of the emacs-elpy test suite, Emacs was throwing the
error "Searching for program: No such file or directory, /bin/sh".  This is
because the default shell when SHELL is not set was "/bin/sh", as can be seen
in callproc.c:

  sh = getenv ("SHELL");
  Vshell_file_name = build_string (sh ? sh : "/bin/sh");

Thus, patch the occurrences of "/bin/sh" in the source files of Emacs to refer
to their correct store location.

* gnu/packages/emacs.scm (emacs)[phases]{patch-program-file-names}: Add phase.
2020-03-22 21:17:39 -04:00
Maxim Cournoyer 393c5e6928
gnu: emacs-minimal: Install the custom site-start file.
This makes the EMACS-MINIMAL package more generally useful, by adding support
to load autoload definitions.  Note that this doesn't negatively impact the
performance of the emacs-build-system, because at that time the --quick option
is used, which disables loading site-start.el (which is the one calling
GUIX-EMACS-AUTOLOAD-PACKAGES).

* gnu/packages/emacs.scm (emacs-minimal)[phases]: Do not delete the
'install-site-start phase.
[inputs]: Add the emacs/guix-emacs.el auxiliary file.
2020-03-22 21:17:39 -04:00
Maxim Cournoyer 3bd3a6257f
gnu: emacs: Re-indent.
* gnu/packages/emacs.scm (emacs): Fix indentation.
2020-03-22 21:17:39 -04:00
Maxim Cournoyer ffaec30702
gnu: emacs: Byte compile the site-lisp directory, without coupling.
This re-instates what the previously reverted commit did, but without adding
a dependency on the (guix build emacs-utils) module.

* gnu/packages/emacs.scm (emacs)[phases]{install-site-start}: Define a
EMACS-BYTE-COMPILE-DIRECTORY procedure, and use it.
2020-03-22 21:17:38 -04:00
Maxim Cournoyer d0a64567f1
Revert "gnu: emacs: Byte compile the site-lisp directory."
This reverts commit 4714d0fc1a.

Rational: Having to rebuild Emacs every time (guix build emacs-utils) changes
is not great.
2020-03-22 21:17:38 -04:00
Maxim Cournoyer 155f9afde5
gnu: emacs: Remove obsolete FIXME comment.
* gnu/packages/aux-files/emacs/guix-emacs.el: Remove comment.
2020-03-22 21:17:38 -04:00
Kei Kebreau 6607aad53c
gnu: wxmaxima: Update to 20.03.1.
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
2020-03-22 19:22:42 -04:00
Ludovic Courtès ae5c4a9292
services: console-font: Fix docstring.
* gnu/services/base.scm (console-font-service-type): Use quasiquote and
unquote appropriately in docstring.
2020-03-23 00:06:58 +01:00
Alexandru-Sergiu Marton d4842a7c47
gnu: i3-gaps: Update to 4.18.
* gnu/packages/wm.scm (i3-gaps): Update to 1.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-22 17:21:33 -04:00
Leo Famulari 268efd97c2
gnu: Remove qemu-minimal-2.10.
* gnu/packages/virtualization.scm (qemu-minimal-2.10): Remove variable.
* gnu/packages/debug.scm (qemu-for-american-fuzzy-lop): New variable.
(american-fuzzy-lop)[inputs]: Remove custom-qemu and add
qemu-for-american-fuzzy-lop.
[arguments]: Adjust reference to QEMU in the 'install-qemu' phase.
2020-03-22 14:26:31 -04:00
Leo Famulari c9164d3098
gnu: Prefix licenses in (gnu packages debug).
* gnu/packages/debug.scm: Add a license prefix.
2020-03-22 14:26:31 -04:00
Guillaume Le Vaillant e6a0cd9aa1
gnu: electron-cash: Update to 4.0.13.
This package was inheriting from electrum, but as now almost all the fields
have differences, let's make these two packages independent from each other.

* gnu/packages/finance.scm (electron-cash): Update to 4.0.13.
  [inputs]: Add libevent, openssl, python-cython, python-hidapi,
  python-keepkey, python-stem, python-trezor, qtsvg and zlib.
  [arguments]: Add a wrap-qt phase allowing qtsvg to be found at runtime to
  show SVG icons correctly.
2020-03-22 19:03:52 +01:00
Alex Griffin 9720894cc8
gnu: gnome-shell-extension-paperwm: Update to 36.0.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm): Update to 36.0.
2020-03-22 11:24:25 -05:00
Guillaume Le Vaillant aaa8893715
gnu: qbittorrent: Fix icons not showing in GUI.
* gnu/packages/bittorrent.scm (qbittorrent)[arguments]: Add a wrap-qt phase.
2020-03-22 17:11:14 +01:00
Ludovic Courtès 23b3947897
gnu: libchop: Build against libtirpc and related tools.
* gnu/packages/backup.scm (libchop)[source]: Add 'modules' and 'snippet'.
[arguments]: Add #:configure-flags; add 'set-libtirpc-include-path' phase.
[native-inputs]: Add RPCSVC-PROTO.
[inputs]: Add LIBTIRPC.
2020-03-22 16:49:47 +01:00
Ludovic Courtès 99b23eabdb
installer: Do not include the host (guix config).
Previously, "locales.drv" would depend on the host's (guix config).
Thus, the derivation would depend on details of the user's installation.

* gnu/installer.scm (not-config?): New procedure.
(build-compiled-file): Pass it to 'source-module-closure' and use
'make-config.scm'.
2020-03-22 16:49:47 +01:00
pinoaffe@airmail.cc 363989e668
gnu: Add nextpnr-ice40.
* gnu/packages/fpga.scm (nextpnr-ice40): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-22 15:59:35 +01:00
pinoaffe@airmail.cc 179be4bbe4
gnu: icestorm: Update to latest revision.
* gnu/packages/fpga.scm (icestorm): Update to latest revision.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-22 15:59:33 +01:00
Efraim Flashner 113309e044
gnu: r-dt: Update license field.
* gnu/packages/statistics.scm (r-dt)[license]: Add wtfpl2.
2020-03-22 15:37:49 +02:00
Efraim Flashner ff66791d3a
gnu: zzuf: Update license field.
* gnu/packages/debug.scm (zzuf)[license]: List as wtfpl2.
2020-03-22 15:37:48 +02:00
Efraim Flashner 8506fce04b
gnu: libcaca: Update license field.
* gnu/packages/video.scm (libcaca)[license]: List as wtfpl2.
2020-03-22 15:37:48 +02:00
Danny Milosavljevic 5c79f23863
system: Add kernel-loadable-modules to operating-system.
* gnu/system.scm (<operating-system>): Add kernel-loadable-modules.
(operating-system-directory-base-entries): Use it.
* doc/guix.texi (operating-system Reference): Document
KERNEL-LOADABLE-MODULES.
* gnu/build/linux-modules.scm (depmod): New procedure.
(make-linux-module-directory): New procedure.  Export it.
* guix/profiles.scm (linux-module-database): New procedure.  Export it.
* gnu/tests/linux-modules.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/linux.scm (make-linux-libre*)[arguments]<#:phases>[install]:
Disable depmod.  Remove "build" and "source" symlinks.
[native-inputs]: Remove kmod.
2020-03-22 12:51:50 +01:00
Mathieu Othacehe 1550db6fd4
tests: install: Abort when one installation step fails.
When marionette-eval calls fail in gui-test-program, the installation
continues which results in two scenarios:

- hang forever at the next marionette-eval call,

- keep going and start a broken installation, which is annoying because it
clears the terminal and hides the error.

Make sure that gui-test-program is exited with #f return code when one of the
marionette-eval calls fail.

* gnu/tests/install.scm (gui-test-program): Add a new macro
"marionette-eval*". Throw an exception when one on the marionette-eval calls
fail.
2020-03-22 10:53:55 +01:00
Efraim Flashner e64ea84392
gnu: python-bleach: Update to 3.1.3 (fixes CVE-2020-6816).
* gnu/packages/python-xyz.scm (python-bleach): Update to 3.1.3.
[native-inputs]: Remove python-pytest-runner2. Add python-datrie,
python-genshi, python-lxml.
[home-page]: Update to new home-page.
2020-03-22 10:39:08 +02:00
Efraim Flashner 34bf3ed26b
gnu: Add python-block-tracing.
* gnu/packages/python-xyz.scm (python-block-tracing): New variable.
2020-03-22 09:58:29 +02:00
Efraim Flashner 0a124c4615
gnu: Add python-privy.
* gnu/packages/python-crypto.scm (python-privy): New variable.
2020-03-22 09:58:29 +02:00
Efraim Flashner 0831063778
gnu: Add python-argon2-cffi.
* gnu/packages/python-crypto.scm (python-argon2-cffi): New variable.
2020-03-22 09:58:28 +02:00
Efraim Flashner 24200bdf9d
gnu: Add python-userspacefs.
* gnu/packages/python-xyz.scm (python-userspacefs): New variable.
2020-03-22 09:58:28 +02:00
Efraim Flashner 2eb09a5cfd
gnu: Add python-fusepyng.
* gnu/packages/python-xyz.scm (python-fusepyng): New variable.
2020-03-22 09:58:28 +02:00
Efraim Flashner 9a684b4078
gnu: Add python-keyrings.alt.
* gnu/packages/python-crypto.scm (python-keyring.alt): New variable.
2020-03-22 09:58:28 +02:00
Efraim Flashner 10d3fbf051
gnu: edirect: Install more programs.
* gnu/packages/bioinformatics.scm (edirect)[arguments]: Add
'patch-programs phase to work around not finding binaries in the PATH.
Rewrite 'install phase to install many more scripts. Rewrite
'wrap-program to wrap more scripts with more programs.
[inputs]: Add edirect-go-programs.
[native-search-paths]: New field.
2020-03-22 09:53:57 +02:00
Efraim Flashner 7d13a94215
gnu: Add edirect-go-programs.
* gnu/packages/bioinformatics.scm (edirect-go-programs): New variable.
(edirect)[source]: Adjust snippet to not use non-free software.
2020-03-22 09:53:57 +02:00
Efraim Flashner 073c64dc79
gnu: Add go-github-com-surgebase-porter2.
* gnu/packages/golang.scm (go-github-com-surgebase-porter2): New variable.
2020-03-22 09:53:57 +02:00
Efraim Flashner 62cfb49159
gnu: Add go-github-com-surge-glog.
* gnu/packages/golang.scm (go-github-com-surge-glog): New variable.
2020-03-22 09:53:56 +02:00
Efraim Flashner 03baf02e6f
gnu: Add go-github-com-pbnjay-memory.
* gnu/packages/golang.scm (go-github-com-pbnjay-memory): New variable.
2020-03-22 09:53:56 +02:00
Efraim Flashner cb38099839
gnu: Add go-github-com-klauspost-cpuid.
* gnu/packages/golang.scm (go-github-com-klauspost-cpuid): New variable.
2020-03-22 09:53:56 +02:00
Efraim Flashner 44b9e8fd8f
gnu: Add go-github-com-gedex-inflector.
* gnu/packages/golang.scm (go-github-com-gedex-inflector): New variable.
2020-03-22 09:12:50 +02:00
Efraim Flashner 40c86b39c3
gnu: Add go-github-com-fogleman-gg.
* gnu/packages/golang.scm (go-github-com-fogleman-gg): New variable.
2020-03-22 09:12:49 +02:00
Efraim Flashner ae863ccd63
gnu: Add go-github-com-golang-freetype.
* gnu/packages/golang.scm (go-github-com-golang-freetype): New variable.
2020-03-22 09:12:49 +02:00
Efraim Flashner 3770bd6526
gnu: Add go-golang-org-rainycape-unidecode.
* gnu/packages/golang.scm (go-golang-org-rainycape-unidecode): New variable.
2020-03-22 09:12:49 +02:00
Efraim Flashner 2573709cc9
gnu: Add go-golang-org-x-image.
* gnu/packages/golang.scm (go-golang-org-x-image): New variable.
2020-03-22 09:12:49 +02:00
Efraim Flashner 405c0c947c
services: Add fontconfig-file-system-service.
* gnu/services/desktop.scm (%fontconfig-file-system,
fontconfig-file-system-service): New variables.
(%desktop-services): Add fontconfig-file-system-service.
2020-03-22 09:08:11 +02:00
pinoaffe@airmail.cc 6f3475655a
gnu: cutter: Update to 1.10.1.
* gnu/packages/engineering.scm (cutter): Update to 1.10.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-22 00:02:24 +01:00
pinoaffe@airmail.cc fcc10cb2cb
gnu: radare2: Update to 4.2.1.
* gnu/packages/engineering.scm (radare2): Update to 4.2.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-22 00:02:24 +01:00
Damien Cassou f5e0634431
gnu: clipmenu: Improve the package definition
* gnu/packages/xdisorg.scm (clipmenu): Add the package's unit-tests to the
check phase.  Wrap the program so the PATH contains all dependencies. The
previous approach to patch the script was incomplete and more complex.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-22 00:02:23 +01:00
Damien Cassou fb2709ef98
gnu: clipnotify: Comment on the lack of a test suite.
* gnu/packages/xdisorg.scm (clipnotify): Add a comment

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-22 00:02:23 +01:00
Damien Cassou 08df188ea8
gnu: clipmenu: Re-indent.
* gnu/packages/xdisorg.scm (clipmenu): Re-indent

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-22 00:02:23 +01:00