me
/
guix
Archived
1
0
Fork 0
Commit Graph

125145 Commits (33a264496319a7dd0871bfc6fff6ab9aed0c66e4)

Author SHA1 Message Date
Sharlatan Hellseher 33a2644963
gnu: go-github-com-go-task-slim-sprig: Enable tests.
* gnu/packages/golang-xyz.scm (go-github-com-go-task-slim-sprig)
[arguments] <#:tests>: Enable it.
<#:phases>: Add 'remove-failing-tests phase.

Change-Id: I32424925a96defd69e2871dee079db8bef2861b2
2024-05-22 22:59:00 +01:00
Sharlatan Hellseher 697252da1c
gnu: go-github-com-go-task-slim-sprig: Move to golang-xyz.
* gnu/packages/golang.scm (go-github-com-go-task-slim-sprig): Move from
here ...
* gnu/packages/golang-xyz.scm: ... to here.

Change-Id: I540e4211e7e4006d654c7da40bba35e2bd577c78
2024-05-22 22:50:07 +01:00
Sharlatan Hellseher 0cc9d66b45
gnu: Add go-go-uber-org-mock.
* gnu/packages/golang-check.scm (go-go-uber-org-mock): New variable.

Change-Id: I9028edc15f1acd3301fde3a49eae8cc28568c6a5
2024-05-22 22:22:24 +01:00
Artyom V. Poptsov 8f0b5e35f3
gnu: Add python-augeas.
* gnu/packages/python-xyz.scm (python-augeas): New variable.

Change-Id: I46d409debfbc358f0ff27c505fba089ceab4e195
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-22 21:31:52 +01:00
Artyom V. Poptsov ee86a504e9
gnu: augeas: Update to 1.14.1.
* gnu/packages/augeas.scm (augeas): Update to 1.14.1.
  [source]: Use tarballs from GitHub.
  [inputs]: Change to "native-inputs".  Add readline.

Change-Id: I9ca46b8a50d11c75ff6d816f2f15e1f005877244
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-22 21:31:52 +01:00
Marco Baggio 3597c73658
gnu: Add r-tglkmeans.
* gnu/packages/cran.scm (r-tglkmeans): New variable.

Change-Id: I13aa0e8c4ab062993d84c99811971ebf6e9179bd
2024-05-22 17:44:49 +02:00
Marco Baggio c46f46f2f3
gnu: Add r-slanter.
* gnu/packages/cran.scm (r-slanter): New variable.

Change-Id: I3b6c76431940f5e6be6a86344029552dded54e54
2024-05-22 17:44:49 +02:00
Ricardo Wurmus a4d8a93abc
gnu: Add r-shinydashboardplus.
* gnu/packages/cran.scm (r-shinydashboardplus): New variable.

Change-Id: Ie50bd8a0234af0fb5ea63377aa005655acad01bd
2024-05-22 17:44:49 +02:00
Ricardo Wurmus b1b981a477
gnu: Add r-waiter.
* gnu/packages/cran.scm (r-waiter): New variable.

Change-Id: I98b27630eba86ab700ac30a361baf14a5d58dae8
2024-05-22 17:44:49 +02:00
Ricardo Wurmus 675d31a5df
gnu: Add esbuild-node.
* gnu/packages/web.scm (esbuild-node): New variable.

Change-Id: I5e1a353a13ef7b4018fcf4aef4832af25f3dabe2
2024-05-22 17:44:49 +02:00
Ricardo Wurmus 9f9127e80a
gnu: ensembl-vep: Update to 112.
* gnu/packages/bioinformatics.scm (ensembl-vep): Update to 112.
[propagated-inputs]: Add perl-list-moreutils.
[native-inputs]: Add perl-test-deep and perl-test-warnings.

Change-Id: I8c7de9f3dbc8c6fe4d1383f9dc215aeba018af0d
2024-05-22 17:44:49 +02:00
guix@mawumag.com d658f8c9af
gnu: Add r-chameleon.
* gnu/packages/cran.scm (r-chameleon): New variable.

Change-Id: I9e0f3c27e434bb802c86ef9e2877f4d810397158
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-05-22 17:44:49 +02:00
Sharlatan Hellseher b462cff5ee
gnu: python-pandera: Update to 0.18.0, fix build.
* gnu/packages/python-science.scm (python-pandera): Update to 0.18.0.
[arguments] <#:test-flags>: Disable one more failing test.

Change-Id: I4d3f59dae8d90ea0afbe9cc932fc6163def282c9
2024-05-22 14:23:16 +01:00
Sharlatan Hellseher b06a460bf5
gnu: python-pymysql: Propagate python-cryptography.
* gnu/packages/databases.scm (python-pymysql)
[inputs]: Swap to [propagated-inputs].
[propagated-inputs]: Add python-pynacl
(mycli, sqlcrush): Remove propagated python-cryptography.

Change-Id: I40ee51087cd14cb98bd2390095fa9f6f0d144b47
2024-05-22 10:13:01 +01:00
Sharlatan Hellseher 5000c417c0
gnu: python-pymysql: Update to 1.1.1 [fixes CVE-2024-36039].
* gnu/packages/databases.scm (python-pymysql): Update to 1.1.1.
[source]: Refresh archive name as seen on
<https://pypi.org/project/PyMySQL/#files>.
[build-system]: Swap to pyproject-build-system.

Change-Id: I20d06f6d1d252f501df001120ee44520e6e5d785
2024-05-22 10:12:05 +01:00
Andy Tai 50bbe668d4
gnu: schmutz: update to commit f8043e.
* gnu/packages/guile-xyz.scm (schmutz): Update to commit f8043e.
  [inputs]: Switch guile-2.2 to guile-3.0.

Change-Id: Ibd3e5a5074119e3d2a9affcd7c98f47cb9f1f677
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-22 15:46:32 +08:00
Artyom V. Poptsov 284a8cd681
gnu: axel: Update to 2.17.14.
* gnu/packages/networking.scm (axel): Update to 2.17.14.

Change-Id: I62ce6e62d7f50662e13e89baff8658ae49224f56
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-22 15:46:32 +08:00
Michael Ford 750148ce1e
gnu: gcc-13: Update to 13.3.0.
* gnu/packages/gcc.scm (gcc-13): Update to 13.3.0.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: Ia2dc3185acbb6671b2719e2d88d55b7d2b8fb92e
2024-05-22 15:46:26 +08:00
David Wilson d7a65f1e91
gnu: emacs-denote: Update to 2.3.0.
* gnu/packages/emacs-xyz.scm (emacs-denote): Update source location and bump
version to 2.3.0.

Change-Id: I573db7f285832bf27659b33274e1d592d1c5aa45
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-05-22 08:51:35 +02:00
Wilko Meyer f1a573067c
gnu: wlsunset: Update to 0.4.0.
* gnu/packages/xdisorg.scm (wlsunset): Update to 0.4.0.

Change-Id: I4638d89c29fd4da2ae9850955bb43875fb00d416
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-22 13:14:04 +08:00
Sören Tempel bf6602beaf
gnu: wlsunset: Install man pages.
* gnu/packages/xdisorg.scm (wlsunset)[native-inputs]: Add scdoc.

Reviewed-by: Dale Mellor <guix-devel-0brg6a@rdmp.org>
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: Iffeb9427a1fd625f9dac4098107336cba639f5e9
2024-05-22 13:13:39 +08:00
Artyom V. Poptsov 036c0b5843
gnu: btop: Update to 1.3.2.
* gnu/packages/admin.scm (btop): Update to 1.3.2.

Change-Id: I503bc5730dd498640cff76e252825c7b47cd5d11
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-22 12:58:47 +08:00
Michael Ford 1fa1325c0b
gnu: LLVM, Clang, libomp, lld: Update to 18.1.6.
* gnu/packages/llvm.scm (llvm-18, clang-18, libomp-18, lld-18):
Update to 18.1.6.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
Change-Id: Ifd5ab99f4195c93e9b8d67aa26caead26c8dd5bc
2024-05-22 11:37:42 +08:00
dan b1db320473
gnu: yambar-wayland: Update to 1.11.0.
* gnu/packages/wm.scm (yambar-wayland): Update to 1.11.0.

Change-Id: I8ee9726a665a97e9dccaead32f1272ab98289c8f
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-22 11:37:42 +08:00
dan 9523b968d5
gnu: fnott: Update to 1.6.0.
* gnu/packages/wm.scm (fnott): Update to 1.6.0.
[arguments]<#:phases>: Patch dbus service file install directory.

Change-Id: I0a64c93b0e1ed43f101cb5a77ecfce5025a2b4b0
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
2024-05-22 11:37:38 +08:00
Zheng Junjie 327a1f0779
system: images: Add visionfive2 module.
* gnu/system/images/visionfive2.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Change-Id: I8831f1148bcddb0d604e1174034fca85cd2887a1
2024-05-22 11:15:30 +08:00
Zheng Junjie c7aec90a91
bootloader: Add u-boot-starfive-visionfive2-bootloader.
* gnu/bootloader/u-boot.scm (u-boot-starfive-visionfive2-bootloader): New variable.

Change-Id: I4b73906fe18d481644102c271f5e0883167b3a50
2024-05-22 11:15:30 +08:00
Zheng Junjie 08474ff6ec
gnu: Add u-boot-starfive-visionfive2.
* gnu/packages/bootloaders.scm (u-boot-starfive-visionfive2): New variable.

Change-Id: I2a7d2275b1a0f4253ffc3152c892687aae11a471
2024-05-22 11:15:30 +08:00
Zheng Junjie 800b33786c
gnu: Add opensbi-for-visionfive2.
* gnu/packages/firmware.scm (opensbi-for-visionfive2): New variable.

Change-Id: I27963937410a3900a63193ce2a1033ac20a79919
2024-05-22 11:15:30 +08:00
Zheng Junjie eaa99648ff
gnu: shepherd-0.10: When target riscv64, use guile-fibers-1.1.
* gnu/packages/admin.scm (shepherd-0.10)[native-inputs]: When target-riscv64?
is true, use guile-fibers-1.1.

Change-Id: I89d2e1a7bd6cbc69d19230d9b1c45ce6e339a13d
2024-05-22 11:15:30 +08:00
Zheng Junjie e5078ff321
image: Raise error when use both grub-efi* bootloader and not gpt image.
* gnu/system/image.scm: Switch Inversion logic, it allow we use customize
bootloader with gpt image.

Change-Id: I801327f6e826a37588b8f0f5246ca820e742f721
2024-05-22 11:15:29 +08:00
Zheng Junjie 04aa2aab70
gnu: linux-libre-6.8: Add riscv config.
* gnu/packages/aux-files/linux-libre/6.8-riscv.conf: New files.
* Makefile.am (AUX_FILES): Add it.

Change-Id: I293912d4f7fe09e281432b0f973999d9d8db582a
2024-05-22 11:15:29 +08:00
Tomas Volf 413ef75f89
gnu: buildah: Switch to gnu-build-system.
Buildah is fundamentally similar to podman and provides its own Makefile.
This commit switches from go-build-system to gnu-build-system so that the
build can be done using `make' instead of reinvention some parts (like
documentation) in the guile.  The package pretty much follows how podman
package looks like.

* gnu/packages/containers.scm (buildah)[source]: Reformat.
[build-system]: Use gnu-build-system.
[arguments]<#:import-path, #:unpack-path, #:go, #:install-source?>: Delete.
<#:make-flags>: Set make flags.
<#:test-target>: Set, even though the tests are disabled.
<#:imported-modules>: Also import (guix build go-build-system) for the
remove-go-references phase.
<#:phases>{'prepare-install-docs, 'build-docs, 'install-docs}: Delete.
{'configure}: Delete.
{'set-env, 'check, 'symlink-helpers, 'wrap-buildah, 'remove-go-references}
{'install-completions}: New phases.
[inputs]: Remove no longer used cni-plugins, conmon, runc.  Add bash-minimal.
[native-inputs]: Remove gnu-make, add go-1.21 and bats.

Change-Id: I0ddd5febb0116a71a857e2a98a9951dbe8bd40d9
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:46:59 +01:00
Tomas Volf b55997d9df
gnu: podman: Revamp the package.
Substantial rework of the podman package.  The source is no longer patched (at
all) and all necessary modifications were moved into wrap-program and phases.

Not everything is supported out of the box, but description mentions what
packages to install to get additional functionality working.

* gnu/packages/containers.scm (podman)[source]: Remove snippet and patches.
[arguments]<#:make-flags>: Add HELPER_BINARIES_DIR.  Add GOMD2MAN to actually
use go-github-com-go-md2man package instead of the bundled version.
<#:imported-modules>: Add (guix build go-build-system).
<#:phases>{'set-env}: Set `CC' as an environment variable due to bug in make
before 4.4.
{'fix-hardcoded-paths}: Remove everything except patching `libexec' and `lib'
locations.
{'symlink-helpers}: New phase symlinking tools not discoverable via $PATH into
one directory (`HELPER_BINARIES_DIR').
{'wrap-podman}: New phase wrapping `podman' to set correct $PATH.
{'remove-go-references}: New phase stripping references to the golang
toolchain from the binaries.
[inputs]: Remove no longer needed cni-plugins, slirp4netns.  Remove referenced
in 'wrap-podman conmon, crun, iptables, passt.  Move go-github-com-go-md2man
into native-inputs.  Add bash-minimal.
[native-inputs]: Add custom grep with supported -P.  Use newer go.  Add
mandoc.
[description]: Explain how to get `podman compose' and `podman machine'
working.
* gnu/packages/patches/podman-program-lookup.patch: Delete file.

Change-Id: Ifc28971a68751831d781517b041eec951a617087
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:46:59 +01:00
Tomas Volf 4f02e0b7f8
gnu: buildah: Update to 1.35.3.
* gnu/packages/containers.scm (buildah): Update to 1.35.3.

Change-Id: I0a00d6a73079ddaa38a454856781adfc2d7f158f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:46:59 +01:00
Tomas Volf 19c1c385c7
gnu: gvisor-tap-vsock: Remove references to go.
This is handled automatically by go-build-system, but (obviously) not by the
gnu-build-system, so add the phase manually.

* gnu/packages/containers.scm (gvisor-tap-vsock)[arguments]<#:phases>: Add
'remove-go-references phase.

Change-Id: I5cef0bc03dfa7f219bdfec4226d0e7772401a5a5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:44:05 +01:00
Tomas Volf e89bfb919e
gnu: Add podman-compose.
* gnu/packages/containers.scm (podman-compose): New variable.

Change-Id: Ieb5ee4b6e82464599a17ec950be8a7dbb2efa842
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:44:05 +01:00
Wilke Schwiedop 2bfdc768d7
gnu: Add catatonit.
* gnu/packages/containers.scm (catatonit): New variable.

Change-Id: Ib6948bde8204426a8cb008982cb7cc9302f9e6d6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:33:57 +01:00
Tomas Volf 5bea6482e6
gnu: passt: Update to 2024_03_20.71dd405.
* gnu/packages/containers.scm (passt): Update to 2024_03_20.71dd405.

Change-Id: I089b7e9364058e59139bdb7cb942fad693254c1f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:16:36 +01:00
Tomas Volf d9e5c0f8d3
gnu: conmon: Update to 2.1.11.
* gnu/packages/containers.scm (conmon): Update to 2.1.11.

Change-Id: I2a46b2dcd344909da34199145fef4ad3fa4418de
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:16:36 +01:00
Tomas Volf 0d6815ae82
gnu: podman: Update to 5.0.2.
* gnu/packages/containers.scm (podman): Update to 5.0.2.

Change-Id: Id12c017e68f30db4ea99547beca54dbd01e3b029
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:16:36 +01:00
Tomas Volf abc62671e0
gnu: podman: Drop obsolete comment.
cgroup2 is now the default type.

* gnu/packages/containers.scm (podman): Drop the comment.

Change-Id: I197ed7e4901b26ad820295ed7adcaffd7bf533f5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:16:35 +01:00
Tomas Volf 5c5e2a7491
gnu: crun: Update to 1.15.
* gnu/packages/containers.scm (crun): Update to 1.15.

Change-Id: I769c15663bf668a967cf32243dd8139b6c949953
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-21 22:16:35 +01:00
Guillaume Le Vaillant 3fd9f25bb3
gnu: Add cl-in-memory-streams.
* gnu/packages/lisp-xyz.scm (cl-in-memory-streams, ecl-in-memory-streams,
  sbcl-in-memory-streams): New variables.

Change-Id: I5f55f1185dfc396d7287b1a402541ad68f355b56
2024-05-21 15:15:03 +02:00
Guillaume Le Vaillant e9f9740d42
gnu: Add cl-cf.
* gnu/packages/lisp-xyz.scm (cl-cf, ecl-cf, sbcl-cf): New variables.

Change-Id: Ic377597dceaf4f4d0c71319056185a958df06155
2024-05-21 14:54:15 +02:00
Guillaume Le Vaillant af2791d4e1
gnu: cl-for: Update to 1.2.0-1.a397829.
* gnu/packages/lisp-xyz.scm (sbcl-for): Update to 1.2.0-1.a397829.

Change-Id: I521ed1cf56bf13934996ba35304cb842c394cdac
2024-05-21 14:38:19 +02:00
Efraim Flashner b3d8d5511f
gnu: julia-fixedpointnumbers: Update to 0.8.5.
* gnu/packages/julia-xyz.scm (julia-fixedpointnumbers): Update to 0.8.5.
(julia-colortypes)[arguments]: Remove 'skip-failing-test phase.

Change-Id: I18cee60a90311af0a052e5d49e4f2b43b54e7e14
2024-05-21 11:49:56 +03:00
Efraim Flashner c634135ef9
gnu: perl-dbix-class: Update to 0.082843.
* gnu/packages/databases.scm (perl-dbix-class): Update to 0.082843.
[propagated-inputs]: Remove perl-moo, perl-scalar-list-utils, and
perl-text-balanced; add perl-moo-2.
[native-inputs]: Remove perl-file-temp.
[properties]: New field.

Change-Id: I67f00f7e4f5b1bc71d9632bb90213df3c0a20ce5
2024-05-21 11:08:14 +03:00
Efraim Flashner 81d08d7970
gnu: abseil-cpp: Fix build on i686-linux.
* gnu/packages/cpp.scm (abseil-cpp)[source]: Add patch.
(abseil-cpp-20220623.1)[source]: Same.
* gnu/packages/patches/abseil-cpp-20220623.1-no-kepsilon-i686.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I27b9abc2c44ff6dc313209f4b0b12542a92d6fcd
2024-05-21 09:25:07 +03:00
Efraim Flashner e50fc5380e
gnu: abseil-cpp-20200923.3: Fix test suite on some architectures.
* gnu/packages/cpp.scm (abseil-cpp-20200923.3)[source]: Add patches.
* gnu/packages/patches/abseil-cpp-20200923.3-adjust-sysinfo.patch,
gnu/packages/patches/abseil-cpp-20200923.3-duration-test.patch: New
files.
* gnu/local.mk (dist_patch_DATA): Register them.

Change-Id: I3a0a6c3396a7c2854236c68ec77a68bbdd6af1f4
2024-05-21 09:10:33 +03:00