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51809 Commits (35f84a7f2761dd4547c9fe6f12908963c7bf9579)

Author SHA1 Message Date
Efraim Flashner a9164807bd
gnu: parallel: Update to 20200422.
* gnu/packages/parallel.scm (parallel): Update to 20200422.
2020-04-22 23:10:22 +03:00
Efraim Flashner eee4173ccc
gnu: guile-8sync: Add support for gnu updater.
* gnu/packages/guile-xyz.scm (guile-8sync)[properties]: New field. Add
upstream-name.
2020-04-22 23:10:22 +03:00
Brice Waegeneire 2b0c0d9301
services: Add udev-rules-service helper.
* doc/guix.texi (Base services): Add documentation for
'udev-rules-service'. Replace examples of 'udev-service-type' extension
with 'udev-rules-service'.
* gnu/services/base.scm (udev-rules-service): New procedure.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:58 +02:00
Felix Gruber 6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:58 +02:00
Brice Waegeneire 93664feee1
system: Split %BASE-PACKAGES in smaller parts.
* gnu/system.scm: (%base-packages-interactive, %base-packages-linux,
%base-packages-networking, %base-packages-utils): New variables.
(%base-packages): Use those new variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:57 +02:00
Raghav Gururajan 3183148992
gnu: Add blueman.
* gnu/packages/networking.scm (blueman): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:57 +02:00
Ludovic Courtès 2e37d1583a
system: 'operating-system-boot-parameters-file' uses 'scheme-file'.
* gnu/system.scm (operating-system-boot-parameters-file): Use
'scheme-file' instead of 'gexp->file'.
(operating-system-directory-base-entries): Adjust accordingly.
2020-04-22 19:23:57 +02:00
Andreas Enge f916ac128a
gnu: pari-gp: Update to 2.11.4.
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.4.
2020-04-22 18:29:52 +02:00
Marius Bakke 8e61dbc828
gnu: ungoogled-chromium: Update to 81.0.4044.122-0.31d6e60 [security fixes].
This fixes CVE-2020-6459, CVE-2020-6460, and CVE-2020-6458.

* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.122.
(%ungoogled-revision): Set to 31d6e60c96481599b42072b4489e4468280198e3.
(%chromium-origin, %ungoogled-origin): Update hashes.
2020-04-22 16:08:26 +02:00
Marius Bakke 808d12bb08
gnu: qt@4: Update source URI.
* gnu/packages/qt.scm (qt-4)[source](uri): Adjust to current.
2020-04-22 16:08:26 +02:00
Ricardo Wurmus cbd2e1edc8
gnu: Remove mumimu.
* gnu/packages/mail.scm (mumimu): Remove variable.
2020-04-22 15:44:30 +02:00
Ricardo Wurmus decf7f6c41
gnu: mumi: Update to 0.0.0-16.9175199.
* gnu/packages/mail.scm (mumi): Update to 0.0.0-16.9175199.
[inputs]: Add guile-xapian; remove mumimu.
2020-04-22 15:44:30 +02:00
Guillaume Le Vaillant 618819aa2f
gnu: Add w-scan.
* gnu/packages/video.scm (w-scan): New variable.
2020-04-22 11:02:43 +02:00
Arun Isaac ed248424d8
gnu: Add font-meera-inimai.
* gnu/packages/fonts.scm (font-meera-inimai): New variable.
2020-04-22 09:58:38 +05:30
Arun Isaac d2b237d0cc
gnu: Add python-google-brotli.
* gnu/packages/compression.scm (python-google-brotli): New variable.
2020-04-22 09:58:28 +05:30
Mark H Weaver 6e8f58fe31
gnu: linux-libre: Update to 5.4.34.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.34.
(linux-libre-5.4-pristine-source): Update hash.
2020-04-21 18:22:09 -04:00
Mark H Weaver 5800d54bee
gnu: linux-libre@5.6: Update to 5.6.6.
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.6.
(linux-libre-5.6-pristine-source): Update hash.
2020-04-21 18:21:11 -04:00
Mark H Weaver fe8b2fc24a
gnu: linux-libre@4.19: Update to 4.19.117.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.117.
(linux-libre-4.19-pristine-source): Update hash.
2020-04-21 18:20:03 -04:00
Leo Famulari 0b9a117765
gnu: OpenSSL: Update to 1.1.1g [fixes CVE-2020-1967].
* gnu/packages/tls.scm (openssl)[replacement]: Replace with openssl-1.1.1g.
(openssl-1.1.1e): Replace variable with ...
(openssl-1.1.1g): ... this.
2020-04-21 16:03:29 -04:00
Michael Rohleder a1c34680b3
gnu: emacs-dired-toggle-sudo: Update to 1.0-0.13bbe52.
* gnu/packages/emacs-xyz.scm (emacs-dired-toggle-sudo): Update to 1.0-0.13bbe52.
* gnu/packages/patches/emacs-dired-toggle-sudo-emacs-26.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-21 12:53:56 -04:00
Ludovic Courtès 7681246325
gnu: shepherd: Add Guile 2.0 variant.
* gnu/packages/admin.scm (guile2.0-shepherd): New variable.
2020-04-21 16:33:21 +02:00
Ludovic Courtès e3358a831e
gnu: shepherd: Update to 0.8.0.
* gnu/packages/admin.scm (shepherd): Update to 0.8.0.
* gnu/services/shepherd.scm (shepherd-configuration-file): Use
'default-pid-file-timeout' instead of fiddling with '%pid-file-timeout'.
2020-04-21 16:33:21 +02:00
Ludovic Courtès aa7b3c6c0e
tests: web: Explicitly wait for the HTTP port.
* gnu/tests/web.scm (run-webserver-test)["HTTP port ready"]: New test.
2020-04-21 16:33:21 +02:00
Ludovic Courtès a295a1ca29
tests: ssh: Explicitly wait for port 22.
Previously we could occasionally try to connect before the server is
actually listening, both for OpenSSH and Dropbear.

* gnu/tests/ssh.scm (run-ssh-test)["wait for port 22"]: New test.
2020-04-21 16:33:21 +02:00
Ricardo Wurmus d10e7a348c
gnu: guile-xapian: Update to 0.1.0.
* gnu/packages/guile-xyz.scm (guile-xapian): Update to 0.1.0.
2020-04-21 14:34:47 +02:00
Pjotr Prins 0e64f12db5
gnu: Add python-rdflib-jsonld.
* gnu/packages/rdf.scm (python-rdflib-jsonld): New variable.
2020-04-21 12:41:47 +03:00
Efraim Flashner 5d29808bea
gnu: rdf.scm: Use license: prefix.
* gnu/packages/rdf.scm: Use a 'license:' prefix for package licenses
instead of only importing a select number of licenses.
2020-04-21 12:38:19 +03:00
Vagrant Cascadian 5327b399a8
gnu: Add u-boot-pinebook-pro-rk3399.
* gnu/packages/bootloaders (u-boot-pinebook-pro-rk3399): New variable.
* gnu/packages/patches/u-boot-DT-for-Pinebook-Pro.patch: New file.
* gnu/packages/patches/u-boot-add-boe-nv140fhmn49-display.patch: New file.
* gnu/packages/patches/u-boot-gpio-keys-binding-cons.patch: New file.
* gnu/packages/patches/u-boot-leds-common-binding-con.patch: New file.
* gnu/packages/patches/u-boot-support-Pinebook-Pro-laptop.patch: New file.
* gnu/packages/patches/u-boot-video-rockchip-fix-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patches.
* gnu/bootloader/u-boot.scm (install-pinebook-pro-rk3399-u-boot,
  u-boot-pinebook-pro-rk3399-bootloader): New variable.

Co-authored-by: Jan Nieuwenhuizen <janneke@gnu.org>
2020-04-20 19:13:35 -07:00
Raghav Gururajan 41169f21e6
gnu: liblinphone: Fix icons.
* gnu/packages/linphone.scm (liblinphone): Fix icons.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2020-04-20 21:50:27 -04:00
Vagrant Cascadian ce5f4701d1
gnu: obs: Update to 25.0.7.
* gnu/packages/video (obs): Update to 25.0.7.
2020-04-20 15:10:18 -07:00
Ludovic Courtès 71977a6c59
Revert "system: Don’t create a module database when no modules are available."
This reverts commit b2fff3b5de.

Fixes <https://bugs.gnu.org/40713>.
Reported by pkill9 <pkill9@runbox.com>.

This commit is incorrect: its effect depends on whether KERNEL's build
output is already available in the store, it breaks with non-package
kernels as reported at <https://bugs.gnu.org/40713>, and the
LINUX-MODULE-DATABASE hook is required at all times since
5c79f23863 removed the relevant bits from
the 'linux-libre' package.
2020-04-21 00:06:40 +02:00
Ludovic Courtès a322e9d16b
services: etc: Detect and report duplicate entries.
Fixes <https://bugs.gnu.org/40729>.
Reported by Christopher Baines <mail@cbaines.net>.

* gnu/services.scm (files->etc-directory)[assert-no-duplicates]: New
procedure.
Use it.
2020-04-21 00:06:40 +02:00
Ludovic Courtès b25ecfa2e0
services: dovecot: 'stop' method returns #f upon success.
* gnu/services/mail.scm (dovecot-shepherd-service)[stop]: Use 'invoke'
instead of 'make-forkexec-constructor'.  Previously, the 'stop' method
would return the PID of the "dovecot stop" process, which would be
interpreted as a failure to stop the service.
2020-04-21 00:06:40 +02:00
Ludovic Courtès 7d903d2ff7
services: Don't use the deprecated 'make-forkexec-constructor' call.
Passing 'make-forkexec-constructor' a string or several string arguments
has been deprecated since dmd 0.1.

* gnu/services/base.scm (rngd-service-type): In 'start' method, pass a
list as the first argument to 'make-forkexec-constructor'.
* gnu/services/desktop.scm (bluetooth-shepherd-service): Likewise.
* gnu/services/spice.scm (spice-vdagent-shepherd-service): Likewise.
2020-04-21 00:06:40 +02:00
Ludovic Courtès b6cb4aeff8
gnu: mcron: Remove now unneeded phase.
This is a followup to a52aa7fdef.

* gnu/packages/guile-xyz.scm (mcron)[arguments]: Remove
'fix-finding-guile'.
2020-04-21 00:06:39 +02:00
Leo Famulari b023a8acd3
gnu: cgit: Update Git source code to 2.25.4.
* gnu/packages/version-control.scm (cgit)[inputs]: Update git-source to 2.25.4.
2020-04-20 16:21:08 -04:00
Leo Famulari 781af06533
gnu: Git: Update to 2.26.2 [fixes CVE-2020-11008].
* gnu/packages/version-control.scm (git): Update to 2.26.2.
[native-inputs]: Update git-manpages.
2020-04-20 16:21:04 -04:00
Naga Malleswari 2eac967ab7
gnu: xfce.scm: Sort module imports.
* gnu/packages/xfce.scm: Sort module imports.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-20 21:32:22 +02:00
Florian Pelz 80dbad1814
installer: Rename uvesafb shepherd service to maybe-uvesafb.
Because the installer's uvesafb service loads uvesafb only on some machines.

This is a follow-up to commit 0ad60b2a89.

* gnu/system/install.scm (uvesafb-shepherd-service): Adjust provision and
description fields.
2020-04-20 19:24:21 +00:00
R Veera Kumar 9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-20 20:05:09 +02:00
Raghav Gururajan e71c7f6abe
gnu: Add midori.
* gnu/packages/web-browsers.scm (midori): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-20 18:54:33 +02:00
Eric Brown e68c8d3ef8
gnu: Add r-bridgesampling.
* gnu/packages/cran.scm (r-bridgesampling): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-20 15:11:08 +02:00
Efraim Flashner a8f01c45c6
gnu: java-bouncycastle: Don't use unstable tarball.
* gnu/packages/java.scm (java-bouncycastle)[source]: Download using
git-fetch. Use upstream's repo, not a mirror.
2020-04-20 08:42:06 +03:00
Efraim Flashner 6632fc2897
gnu: java-lz4: Don't use unstable tarball.
* gnu/packages/java.scm (java-lz4)[source]: Download using git-fetch.
[arguments]: Add phase to make files writable.
2020-04-20 08:42:06 +03:00
Efraim Flashner e9917c696b
gnu: java-fest-assert: Don't use unstable tarball.
* gnu/packages/java.scm (java-fest-assert)[source]: Download using
git-fetch.
2020-04-20 08:42:06 +03:00
Efraim Flashner 79e7400883
gnu: java-fest-test: Don't use unstable tarball.
* gnu/packages/java.scm (java-fest-test)[source]: Download using
git-fetch.
2020-04-20 08:42:06 +03:00
Efraim Flashner 00f3190d6b
gnu: java-fest-util: Don't use unstable tarball.
* gnu/packages/java.scm (java-fest-util)[source]: Download using
git-fetch.
2020-04-20 08:42:06 +03:00
Efraim Flashner 8c2a6183de
gnu: graphene: Update to 1.10.0.
* gnu/packages/gtk.scm (graphene): Update to 1.10.0.
[build-system]: Switch to meson-build-system.
[arguments]: Update configure-flags to not install tests.
[inputs]: Remove python2. Move gobject-introspection ...
[native-inputs]: ... to here. Remove autoconf, automake, libtool, which.
2020-04-20 08:42:05 +03:00
Efraim Flashner 6914eea01d
gnu: sparql-query: Sort inputs alphabetically.
* gnu/packages/databases.scm (sparql-query)[inputs]: Sort alphabetically.
2020-04-20 08:42:05 +03:00
Efraim Flashner ce64b9d136
gnu: sparql-query: Don't use unstable tarball.
* gnu/packages/databases.scm (sparql-query)[source]: Download using
git-fetch.
2020-04-20 08:42:02 +03:00
Pierre Langlois 096a0527a1
gnu: mu: Update to 1.4.
* gnu/packages/mail.scm (mu): Update to 1.4.
[arguments]: Remove 'fix-date-tests phase. Add 'patch-bin-sh-in-tests phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-19 18:36:27 -04:00
Ludovic Courtès 5e7076f2a5
services: Add 'simulated-wifi-service-type'.
* gnu/services/networking.scm (simulated-wifi-shepherd-services): New
procedure.
(simulated-wifi-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2020-04-19 23:50:17 +02:00
Ludovic Courtès a03943ec00
services: Add 'hostapd-service-type'.
* gnu/services/networking.scm (<hostapd-configuration>): New record
type.
(hostapd-configuration-file, hostapd-shepherd-services): New
procedures.
(hostapd-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.
2020-04-19 23:50:17 +02:00
Julien Lepiller 4313e6ec55
gnu: php: Update to 7.4.5.
* gnu/packages/php.scm (php): Update to 7.4.5.
2020-04-19 22:57:16 +02:00
Danny Milosavljevic 58d5b8b44b
Revert "gnu: libxfce4util: Update to 4.15.0."
This reverts commit c0bff513a4.
2020-04-19 18:44:24 +02:00
Nicolas Goaziou 5c10d55206
gnu: emacs-org-superstar: Update to 1.2.1.
* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.2.1.
2020-04-19 14:33:30 +02:00
Raghav Gururajan a3cbcbaf8b
gnu: Add notification-daemon.
* gnu/packages/gnome.scm (notification-daemon): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-19 13:27:07 +02:00
Martin Becze 0639a24038
gnu: Add trezord-udev-rules.
* gnu/packages/finance.scm (trezord-udev-rules): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-19 13:27:06 +02:00
Mathieu Othacehe ea6594e08e
installer: connman: Fix Wifi connection.
Issue reported by SergioBG here:
https://lists.gnu.org/archive/html/bug-guix/2020-04/msg00432.html.

Due to default buffering mode, the installer was reading from the pipe without
having actually written a command before.

* gnu/installer/connman.scm (connman-connect-with-auth): Set pipe buffering
mode to 'line.
2020-04-19 11:46:21 +02:00
Efraim Flashner fafe2343c2
services: sddm: Have sddm provision xorg-server.
* gnu/services/sddm.scm (sddm-shepherd-service)[shepherd-service]: Have
sddm provision 'xorg-server like the other display managers.
2020-04-19 09:06:20 +03:00
Efraim Flashner de5200ada9
gnu: python-cython: Update to 0.29.16.
* gnu/packages/python-xyz.scm (python-cython): Update to 0.29.16.
2020-04-18 22:50:59 +03:00
Efraim Flashner cac674d99d
gnu: qrcodegen-cpp: Update to 1.6.0.
* gnu/packages/aidc.scm (qrcodegen-cpp): Update to 1.6.0.
2020-04-18 22:23:51 +03:00
Efraim Flashner 0144f8def8
gnu: vim-asyncrun: Update to 2.7.5.
* gnu/packages/vim.scm (vim-asyncrun): Update to 2.7.5.
2020-04-18 22:23:48 +03:00
Leo Famulari d7041a69ed
gnu: libavif: Update to 0.7.1.
* gnu/packages/image.scm (libavif): Update to 0.7.1.
[arguments]: Run the test suite.
2020-04-18 15:08:36 -04:00
Giacomo Leidi 190f460f98
gnu: Add node-semver.
* gnu/packages/node-xyz.scm (node-semver): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-18 21:36:26 +03:00
Efraim Flashner 6a825d8c0d
gnu: chess: Update to 6.2.6.
* gnu/packages/games.scm (chess): Update to 6.2.6.
2020-04-18 21:01:52 +03:00
Efraim Flashner dc9b1835d2
gnu: chess: Set upstream name and ftp-directory.
* gnu/packages/games.scm (chess)[properties]: New field. Add
upstream-name and ftp-directory.
2020-04-18 20:57:15 +03:00
Mathieu Othacehe 1a9af96b18
installer: Fix backtrace display.
The 'syslog' macro cannot be resolved in the pre-unwind-handler
context. Failed to resolve 'syslog' in this context resulted in the swallowing
of all installation errors.

Fixes 5c04b00cf4.

* gnu/installer.scm (installer-program): Use (gnu installer utils) module.
2020-04-18 17:42:02 +02:00
Leo Famulari 5a8ef3c127
gnu: Use the test-only time zone database where appropriate.
* gnu/packages/backup.scm (duplicity)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-for-tests.
* gnu/packages/finance.scm (ledger): Likewise.
* gnu/packages/compression.scm (lhasa)[native-inputs]: Use tzdata-for-tests.
* gnu/packages/cran.scm (r-rstan)[native-inputs]: Likewise.
* gnu/packages/databases.scm (mongodb)[native-inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (kdelibs4support)[native-inputs]: Likewise.
2020-04-17 17:26:56 -04:00
Martin Becze abb37b3c62
gnu: trezord: Update to 2.0.29.
* gnu/packages/finance.scm (trezord): Update to 2.0.29.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-17 23:18:32 +02:00
TomZ 4e3314a4c5
gnu: fulcrum: Update to 1.1.0
* gnu/packages/finance.scm (fulcrum): Update to 1.1.0

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-17 23:18:32 +02:00
Ludovic Courtès 1e7281108b
services: account: Have 'user-processes' depend on 'user-homes'.
Until now, 'user-homes' happened to start right after 'user-processes'
and before services that depend on a home directory but the dependency
was not explicit.  This addresses it.

* gnu/system/shadow.scm (account-service-type): Extend
USER-PROCESSES-SERVICE-TYPE.
2020-04-17 23:18:32 +02:00
Ludovic Courtès 10c413685f
services: Move 'user-processes' to (gnu services shepherd).
* gnu/services/base.scm (%do-not-kill-file)
(user-processes-shepherd-service, user-processes-service-type): Move
to...
* gnu/services/shepherd.scm: ... here.
2020-04-17 23:18:32 +02:00
Mark H Weaver f0da92cb42
gnu: linux-libre: Update to 5.4.33.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33.
(linux-libre-5.4-pristine-source): Update hash.
2020-04-17 15:02:04 -04:00
Mark H Weaver 4298fbe2ce
gnu: linux-libre@5.6: Update to 5.6.5.
* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5.
(linux-libre-5.6-pristine-source): Update hash.
2020-04-17 15:01:25 -04:00
Mark H Weaver e419e972bc
gnu: linux-libre@4.19: Update to 4.19.116.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116.
(linux-libre-4.19-pristine-source): Update hash.
2020-04-17 15:00:19 -04:00
Marius Bakke a7dbd38859
gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes CVE-2020-6457].
* gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113.
(%chromium-origin): Update hash.
2020-04-17 17:03:20 +02:00
Ricardo Wurmus 974bf81776
gnu: python-pygenometracks: Update to 3.3.
* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3.
[arguments]: Add phase "relax-requirements"; disable tests.
[propagated-inputs]: Remove python-configparser and python-hicexplorer; add
python-gffutils, python-pysam, and python-tqdm.
2020-04-17 15:53:03 +02:00
Ricardo Wurmus d8fce2362b
gnu: Add python-hicmatrix.
* gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
2020-04-17 15:53:03 +02:00
Ricardo Wurmus c55beaecd8
gnu: python-cooler: Update to 0.8.7.
* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7.
[propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and
python-simplejson.
[native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add
python-pytest.
2020-04-17 15:53:03 +02:00
Ricardo Wurmus 4a085ffc16
gnu: python-pybigwig: Update to 0.3.17.
* gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
2020-04-17 15:53:03 +02:00
Ricardo Wurmus d3f292b8dc
gnu: python-tables: Update to 3.6.1.
* gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1.
[arguments]: Adjust use-gcc phase.
2020-04-17 15:53:03 +02:00
Pierre Langlois 79ef0726a9
gnu: python-podcastparser: Run tests.
* gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add
python-coverage.
[arguments]: Replace 'check phase and invoke "nosetests".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-17 13:03:02 +02:00
Pierre Langlois 5ea902874b
gnu: gpodder: Run tests.
* gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and
python-minimock.
[arguments]: Replace the 'check phase and invoke "make unittest".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-17 13:03:02 +02:00
Pierre Langlois 54e3eb06ca
gnu: gpodder: Update to 3.10.15.
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.15.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-17 13:03:02 +02:00
Pierre Langlois 84ce7c5a55
gnu: dovecot: Add libunwind input for arm.
* gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-17 13:03:01 +02:00
Efraim Flashner d312bbfa5a
gnu: khard: Move propagated-inputs to inputs.
As a package one would install we can rely on wrapping the package and
not propagating inputs to make it work correctly.

* gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python
packages ...
[inputs]: ... to here.
2020-04-17 10:47:35 +03:00
Efraim Flashner c135577dbf
gnu: khal: Move propagated inputs to inputs.
As a package one would install we can rely on wrapping the package and
not propagating inputs to make it work correctly.

* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python
packages...
[inputs]: ... to here.
2020-04-17 10:42:41 +03:00
Efraim Flashner b9dd2a2fb7
gnu: khal: Fix build with python-urwid-2.1.0.
* gnu/packages/calendar.scm (khal)[source]: Download upstream patch to
fix compatibility with newer python-urwid.
2020-04-17 10:40:34 +03:00
Christopher Baines 2cc226bbc7
gnu: diffoscope.scm: Add missing import.
This follows on from 2d9886f7e8.

* gnu/packages/diffoscope.scm: Import (gnu packages maths).
2020-04-17 07:33:37 +01:00
Vagrant Cascadian 2d9886f7e8
gnu: diffoscope: Update to 141.
* gnu/packages/diffoscope (diffoscope): Update to 141.
  [arguments]: Add phase add-known-tools.
  [native-inputs]: Add hdf5.
2020-04-16 20:46:38 -07:00
Vagrant Cascadian cdac010c19
gnu: disorderfs: Update to 0.5.9.
* gnu/packages/file-systems (disorderfs): Update to 0.5.9.
2020-04-16 20:46:35 -07:00
Marius Bakke bff70d93d2
gnu: python-jedi: Fix test failure on some file systems.
Reported by sirgazil on #guix.

* gnu/packages/patches/python-jedi-sort-project-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it.
[arguments]: Run tests more verbosely while at it.
2020-04-17 00:51:48 +02:00
Nicolas Goaziou 91fb989f10
gnu: xournalpp: Remove outdated comments.
* gnu/packages/pdf.scm (xournalpp): Remove outdated comments.  This is
a followup to 9cb2f28c5a.
2020-04-16 23:43:50 +02:00
Nicolas Goaziou 7b2cb1bf19
gnu: wireshark: Update to 3.2.3.
* gnu/packages/networking.scm (wireshark): Update to 3.2.3.
2020-04-16 21:59:50 +02:00
Efraim Flashner be02a4cb81
gnu: python-hy: Update to 0.18.0.
* gnu/packages/python-xyz.scm (python-hy): Update to 0.18.0.
[arguments]: Make all phases return #t.
[propagated-inputs]: Remove python-clint, python-fastentrypoints. Add
python-colorama.
(python2-hy): Remove variable.
2020-04-16 22:40:40 +03:00
Efraim Flashner 626874eb3f
gnu: python-icalendar: Update to 4.0.5.
* gnu/packages/python-xyz.scm (python-icalendar): Update to 4.0.5.
2020-04-16 22:40:40 +03:00
Efraim Flashner e40e7fdf09
gnu: toot: Update to 0.26.0.
* gnu/packages/mastodon.scm (toot): Update to 0.26.0.
2020-04-16 22:40:39 +03:00
Efraim Flashner bc6c3f48ff
gnu: python-urwid: Update to 2.1.0.
* gnu/packages/python-xyz.scm (python-urwid): Update to 2.1.0.
2020-04-16 22:40:39 +03:00
Efraim Flashner c1c2fa68df
gnu: python-vobject: Update to 0.9.6.1.
* gnu/packages/python-xyz.scm (python-vobject): Update to 0.9.6.1.
2020-04-16 22:40:39 +03:00
Efraim Flashner 2765787d65
gnu: python-pyicu: Update to 2.4.3.
* gnu/packages/python-xyz.scm (python-pyicu): Update to 2.4.3.
[properties]: Remove field.
(python2-pyicu): Remove package customizations.
2020-04-16 22:40:39 +03:00
Efraim Flashner 70333ee612
gnu: khard: Update to 0.16.1.
* gnu/packages/mail.scm (khard): Update to 0.16.1.
[arguments]: Remove custom 'install-doc phase. Add 'install-completions
phase.
2020-04-16 22:40:39 +03:00
Nicolas Goaziou 9cb2f28c5a
gnu: xournalpp: Update to 1.0.18.
* gnu/packages/pdf.scm (xournalpp): Update to 1.0.18.
2020-04-16 21:38:55 +02:00
Mathieu Othacehe 2e7e0cb547
installer: Remove guile-newt definition.
This is no longer necessary since 0.0.2 release of Guile-Newt.

* gnu/installer.scm (guile-newt): Remove variable.
2020-04-16 19:57:30 +02:00
Mathieu Othacehe f52c1f5f61
gnu: guile-newt: Update to 0.0.2.
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.2,
[source]: remove Guile 3.0 snippet.
2020-04-16 19:57:30 +02:00
Tobias Geerinckx-Rice c6f74eb540
gnu: xfce4-taskmanager: Update to 1.2.3.
* gnu/packages/xfce.scm (xfce4-taskmanager): Update to 1.2.3.
[source]: Hard-code NAME.
2020-04-16 19:42:22 +02:00
Tobias Geerinckx-Rice b760b6922d
gnu: xfwm4: Update to 4.14.1.
* gnu/packages/xfce.scm (xfwm4): Update to 4.14.1.
[source]: Hard-code NAME.
2020-04-16 19:42:22 +02:00
Tobias Geerinckx-Rice 0159eae3c9
gnu: xfdesktop: Update to 4.14.2.
* gnu/packages/xfce.scm (xfdesktop): Update to 4.14.2.
[source]: Hard-code NAME.
2020-04-16 19:42:22 +02:00
Tobias Geerinckx-Rice 9fcd4ef30b
gnu: augeas: Use HTTPS home page.
* gnu/packages/augeas.scm (augeas)[home-page]: Use HTTPS.
2020-04-16 19:42:20 +02:00
Tobias Geerinckx-Rice 53b655727e
gnu: augeas: Update to 1.12.0.
* gnu/packages/augeas.scm (augeas): Update to 1.12.0.
2020-04-16 19:42:20 +02:00
Tobias Geerinckx-Rice 48a8b4658c
gnu: xterm: Update to 353.
* gnu/packages/xorg.scm (xterm): Update to 353.
2020-04-16 19:42:19 +02:00
guy fleury iteriteka 7adf6f1be9
gnu: Add the GNU MDK.
* gnu/packages/education.scm (mdk): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-04-16 18:33:21 +02:00
Guillaume Le Vaillant 90ec708579
gnu: Add flwrap.
* gnu/packages/radio.scm (flwrap): New variable.
2020-04-16 15:08:53 +02:00
Guillaume Le Vaillant 660912a477
gnu: Add flamp.
* gnu/packages/radio.scm (flamp): New variable.
2020-04-16 14:53:50 +02:00
Ricardo Wurmus 3f782a6d95
gnu: r-destiny: Add missing input.
* gnu/packages/bioconductor.scm (r-destiny)[native-inputs]: Add r-nbconvertr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 506cbeabaa
gnu: r-bacon: Add missing input.
* gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus faaf2b3571
gnu: r-bioassayr: Add missing input.
* gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus fca68e34fb
gnu: Add r-nbconvertr.
* gnu/packages/cran.scm (r-nbconvertr): New variable.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 229736aa52
gnu: r-activepathways: Add missing input.
* gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]:
Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 5ef2b749b5
gnu: r-dose: Add missing input.
* gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 2ff4197626
gnu: r-ggextra: Add missing input.
* gnu/packages/cran.scm (r-ggextra)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Ricardo Wurmus 507a608397
gnu: r-gdina: Add missing input.
* gnu/packages/cran.scm (r-gdina)[native-inputs]: Add r-knitr.
2020-04-16 07:07:23 +02:00
Leo Famulari 46bc7c31c6
gnu: ISC DHCP: Update bundled BIND to 9.11.18 [security fixes].
* gnu/packages/admin.scm (isc-dhcp): Update bundled BIND to 9.11.18.
2020-04-15 23:19:08 -04:00
Guillaume Le Vaillant 8080c03d14
gnu: Add flrig.
* gnu/packages/radio.scm (flrig): New variable.
2020-04-15 22:35:14 +02:00
Guillaume Le Vaillant 72f6ee0e15
gnu: Add fldigi.
* gnu/packages/radio.scm (fldigi): New variable.
2020-04-15 22:35:14 +02:00
TomZ 87b343f753
gnu: Add flowee.
* gnu/packages/finance.scm (flowee): New variable.
2020-04-15 22:27:07 +02:00
Ricardo Wurmus 8f0b41c8bf
gnu: cuirass: Update to 0.0.1-29.27af1d3.
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-29.27af1d3.
[version]: Use git-version.
[file-name]: Use git-file-name.
2020-04-15 20:02:55 +02:00
Tobias Geerinckx-Rice ce6619b059
gnu: bind: Update to 9.16.2 [security fixes].
* gnu/packages/dns.scm (isc-bind): Update to 9.16.2.
2020-04-15 19:55:44 +02:00
Ludovic Courtès b4440de133
Merge branch 'version-1.1.0' 2020-04-15 16:09:18 +02:00
guy fleury iteriteka 141262f266
gnu: Add gtkd.
* gnu/packages/dlang.scm (gtkd): New variable.
2020-04-15 15:15:27 +02:00
Vitaliy Shatrov dfe277a5ce
gnu: Add g-golf
* gnu/packages/guile-xyz.scm (g-golf): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-04-15 13:18:07 +01:00
Marius Bakke 27ed894851
gnu: Remove libvpx@1.7.
* gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/video.scm (libvpx-1.7): Remove variable.
2020-04-15 13:50:19 +02:00
Marius Bakke 07fc1c0d44
gnu: IceCat: Build with the latest libvpx.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Change from LIBVPX-1.7 to LIBVPX.
2020-04-15 13:48:54 +02:00
Marius Bakke ff2bf8a223
gnu: python-jedi: Update to 0.17.0.
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.17.0.
[source](patches): Remove.
* gnu/packages/patches/python-jedi-deleted-variables.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-04-15 13:23:40 +02:00
Mike Rosset 2708ae3d69
gnu: emacsy-minimal: Update to v0.4.1-28.d459ca1.
* gnu/packages/guile-xyz.scm (emacsy-minimal): Update to v0.4.1-28.d459ca1.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-04-15 09:22:35 +01:00
Guillaume Le Vaillant 01e62a022d
gnu: gqrx: Add volk to inputs.
* gnu/packages/radio.scm (gqrx)[inputs]: Add volk.
2020-04-15 10:20:53 +02:00
Guillaume Le Vaillant 29cab668f6
gnu: gnuradio-iqbalance: Add volk to inputs.
* gnu/packages/radio.scm (gnuradio-iqbalance)[inputs]: Add volk.
2020-04-15 10:20:53 +02:00
Guillaume Le Vaillant b39262021d
gnu: gnuradio-osmosdr: Add volk to inputs.
* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add volk.
2020-04-15 10:20:53 +02:00
Guillaume Le Vaillant 8e1e86b0e2
gnu: gnuradio: Use shared volk instead of bundled one.
* gnu/packages/radio.scm (gnuradio)[source]: Add snippet to delete bundled
  volk.
  [inputs]: Add volk.
  [arguments]: Add "-DENABLE_INTERNAL_VOLK=OFF" to configure-flags.
2020-04-15 10:20:53 +02:00
Jan (janneke) Nieuwenhuizen 01782ad006
gnu: hardware: Add copyright line.
Add missing copyright line for commit
22a98cda38

* gnu/packages/hardware.scm: Add copyright.
2020-04-15 10:04:58 +02:00
Ludovic Courtès 33ff35d570
gnu: guix: Update to 1.1.0. 2020-04-15 09:58:26 +02:00
Vagrant Cascadian be0ecfb178
gnu: u-boot: Update to 2020.04.
* gnu/packages/bootloaders (u-boot): Update to 2020.04.
2020-04-15 00:44:55 -07:00
Mathieu Othacehe 575032c80a
gnu: guile-parted: Update to 0.0.4.
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.4.
2020-04-15 08:56:20 +02:00
Leo Famulari 004033a9cf
gnu: cgit: Update Git source code to 2.25.3.
* gnu/packages/version-control.scm (cgit)[inputs]: Update git-source to 2.25.3.
2020-04-15 01:54:50 -04:00
Leo Famulari 3f717354d4
gnu: Git: Update to 2.26.1 [fixes CVE-2020-5260].
* gnu/packages/version-control.scm (git): Update to 2.26.1.
[native-inputs]: Update git-manpages.
2020-04-15 01:54:49 -04:00
Ludovic Courtès 8aa752ba22
services: shepherd: Increase the PID file timeout to 30s.
When running the installation image off a DVD, early I/O operations are
extremely slow, to the point that something like dbus-daemon would need
~20s to start.  This change works around the issue.

Fixes <https://bugs.gnu.org/40572>.
Reported by Florian Pelz <pelzflorian@pelzflorian.de>.

* gnu/services/shepherd.scm (shepherd-configuration-file): Set
%pid-file-timeout to 30.
2020-04-15 00:02:23 +02:00
Michael Rohleder 06e48de57e
gnu: emacs-helm-ag: Update to 0.59.
* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Update to 0.59.
2020-04-14 22:54:34 +02:00
Marius Bakke 2e3d5fdf05
gnu: cook: Fix test failure.
* gnu/packages/cook.scm (cook)[arguments]: Override LC_ALL for one test.
2020-04-14 22:48:52 +02:00
Marius Bakke 671dba6566
gnu: python-pyrsistent: Update to 0.16.0.
* gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.16.0.
2020-04-14 22:48:51 +02:00
Marius Bakke 83031dee87
gnu: python-gssapi: Update to 1.6.5.
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.6.5.
2020-04-14 22:48:51 +02:00
Marius Bakke c0b6bb23c1
gnu: python-parso: Update to 0.7.0.
* gnu/packages/python-xyz.scm (python-parso): Update to 0.7.0.
2020-04-14 22:48:51 +02:00
Tobias Geerinckx-Rice a4dd5955b3
gnu: mksh: Update to 58.
* gnu/packages/shells.scm (mksh): Update to 58.
2020-04-14 20:23:22 +02:00
Tobias Geerinckx-Rice eaa668ddda
gnu: txr: Update to 235.
* gnu/packages/lisp.scm (txr): Update to 235.
[arguments]: Cosmetic shortening.
2020-04-14 20:23:22 +02:00
Tobias Geerinckx-Rice 92e52d25ad
gnu: txr: Call ./configure manually instead of patching.
* gnu/packages/lisp.scm (txr)[source]: Remove patch.
[arguments]: Add ‘--prefix’ to #:configure-flags.
Use a custom ‘configure’ phase.
* gnu/packages/patches/txr-shell.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice c3f88d4f34
gnu: txr: Declare test target.
* gnu/packages/lisp.scm (txr)[arguments]: Use #:test-target instead of
a trivial custom ‘check’ phase.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice 8aa0d29d3e
gnu: i2pd: Update to 2.31.0.
* gnu/packages/i2p.scm (i2pd): Update to 2.31.0.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice d9b9989a5b
gnu: strongswan: Update to 5.8.4.
* gnu/packages/networking.scm (strongswan): Update to 5.8.4.
2020-04-14 20:23:21 +02:00
Tobias Geerinckx-Rice d94271f9ca
gnu: python-podcastparser: Update to 0.6.5.
* gnu/packages/gpodder.scm (python-podcastparser): Update to 0.6.5.
2020-04-14 17:33:12 +02:00
Tobias Geerinckx-Rice 49f8912bca
gnu: man-pages: Update to 5.06.
* gnu/packages/man.scm (man-pages): Update to 5.06.
2020-04-14 17:33:11 +02:00
Tobias Geerinckx-Rice 0fc1feec2e
gnu: x265: Update to 3.3.
* gnu/packages/video.scm (x265): Update to 3.3.
2020-04-14 17:33:11 +02:00
Ricardo Wurmus 9536367ca0
gnu: r-glue: Update to 1.4.0.
* gnu/packages/cran.scm (r-glue): Update to 1.4.0.
[native-inputs]: Add commment explaining why r-knitr is not an input.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus 3707efe4e1
gnu: r-rcpparmadillo: Update to 0.9.860.2.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.860.2.0.
[native-inputs]: Remove r-knitr, r-rmarkdown, ghc-pandoc, and
ghc-pandoc-citeproc.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus 9a6bc4c214
gnu: r-atacseqqc: Update to 1.10.4.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus f4be4995d6
gnu: r-a4base: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus 851081bf34
gnu: r-varianttools: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
2020-04-14 16:41:01 +02:00
Ricardo Wurmus 64cf2ff90e
gnu: r-genomicinteractions: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 1971d11db9
gnu: r-delayedarray: Update to 0.12.3.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.3.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 679609e179
gnu: r-s4vectors: Update to 0.24.4.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.4.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 79759bc427
gnu: r-httpcode: Update to 0.3.0.
* gnu/packages/cran.scm (r-httpcode): Update to 0.3.0.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus e9962d8a6b
gnu: r-isoband: Update to 0.2.1.
* gnu/packages/cran.scm (r-isoband): Update to 0.2.1.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 5c819cd214
gnu: r-anthropometry: Update to 1.14.
* gnu/packages/cran.scm (r-anthropometry): Update to 1.14.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 172fea2c0a
gnu: r-lhs: Update to 1.0.2.
* gnu/packages/cran.scm (r-lhs): Update to 1.0.2.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus cee6e12acf
gnu: r-txtplot: Update to 1.0-4.
* gnu/packages/cran.scm (r-txtplot): Update to 1.0-4.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 72db4e234d
gnu: r-parameters: Update to 0.6.1.
* gnu/packages/cran.scm (r-parameters): Update to 0.6.1.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 2274df5ae7
gnu: r-sf: Update to 0.9-1.
* gnu/packages/cran.scm (r-sf): Update to 0.9-1.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus e515dd6068
gnu: r-spdata: Update to 0.3.5.
* gnu/packages/cran.scm (r-spdata): Update to 0.3.5.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus b05caf7080
gnu: r-classint: Update to 0.4-3.
* gnu/packages/cran.scm (r-classint): Update to 0.4-3.
[native-inputs]: Add r-knitr.
2020-04-14 16:41:00 +02:00
Ricardo Wurmus 43594ac04a
gnu: r-lemon: Update to 0.4.4.
* gnu/packages/cran.scm (r-lemon): Update to 0.4.4.
[propagated-inputs]: Add r-rlang.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus e1e73f6b0e
gnu: r-compositions: Update to 1.40-5.
* gnu/packages/cran.scm (r-compositions): Update to 1.40-5.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 96cda4517d
gnu: r-lmertest: Update to 3.1-2.
* gnu/packages/cran.scm (r-lmertest): Update to 3.1-2.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 708ef6247f
gnu: r-usethis: Update to 1.6.0.
* gnu/packages/cran.scm (r-usethis): Update to 1.6.0.
[propagated-inputs]: Remove r-clisymbols; add r-cli and r-rematch2.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 10ce5ca824
gnu: r-fs: Update to 1.4.1.
* gnu/packages/cran.scm (r-fs): Update to 1.4.1.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus dceb9a702b
gnu: r-effectsize: Update to 0.3.0.
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.0.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 50df1d7b37
gnu: r-multcomp: Update to 1.4-13.
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-13.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 4bfa2b2536
gnu: r-survey: Update to 4.0.
* gnu/packages/cran.scm (r-survey): Update to 4.0.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 7ab2b36ffb
gnu: r-sjmisc: Update to 2.8.4.
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.4.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 3552a8dfe4
gnu: r-arules: Update to 1.6-5.
* gnu/packages/cran.scm (r-arules): Update to 1.6-5.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 3343ec5262
gnu: r-xfun: Update to 0.13.
* gnu/packages/cran.scm (r-xfun): Update to 0.13.
[native-inputs]: Add comment about not adding r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus f14664aa5f
gnu: r-rcpp: Update to 1.0.4.6.
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.4.6.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus 2e47488c72
gnu: r-lubridate: Update to 1.7.8.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.8.
[propagated-inputs]: Remove r-stringr; add r-generics.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:59 +02:00
Ricardo Wurmus b493e5aba8
gnu: r-cairo: Update to 1.5-12.
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus ec2b99c1f0
gnu: r-lme4: Update to 1.1-23.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-23.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-statmod.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus 91108903bc
gnu: r-mclust: Update to 5.4.6.
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.6.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus e470b9fa99
gnu: r-sfsmisc: Update to 1.1-6.
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-6.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus 28e1e573cb
gnu: r-plotly: Update to 4.9.2.1.
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.2.1.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus 5269899aac
gnu: r-devtools: Update to 2.3.0.
* gnu/packages/statistics.scm (r-devtools): Update to 2.3.0.
[native-inputs]: Add r-knitr.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus f3310342ac
gnu: r-backports: Update to 1.1.6.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.6.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus 1f08818752
gnu: r-xml2: Update to 1.3.1.
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.1.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus e872949f0d
gnu: r-gdtools: Update to 0.2.2.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.2.
2020-04-14 16:40:58 +02:00
Ricardo Wurmus 3805ce3dba
gnu: r-reshape2: Update to 1.4.4.
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.4.
2020-04-14 16:40:58 +02:00