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Author SHA1 Message Date
Ricardo Wurmus
36a1e76173
gnu: snakemake: Fetch from git repository. 
* gnu/packages/python-xyz.scm (snakemake)[source]: Fetch from git repository
to include tests.
[arguments]: Enable tests; add 'pre-check phase.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add git-minimal, python-wrapper, python-pytest,
python-pandas, and python-requests-mock.

Change-Id: I32e9d36752cc91eacb8f05138d969834dbbce817
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
6095e5b436
gnu: snakemake-7: Make compatible with tabulate 0.9.0. 
* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Add phase
'tabulate-compatibility.

Change-Id: Ie6b2a7d65bc76e3df7c3946ba4533b301f5a3610
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
6244177e79
gnu: snakemake-6: Make compatible with tabulate 0.9.0. 
* gnu/packages/python-xyz.scm (snakemake-6)[arguments]: Add phase
'tabulate-compatibility.

Change-Id: I0471726e2000af76871e2542ed347cd1727bf0c9
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
57f265f1ea
gnu: python-dask: Do not reference pyarrow_hotfix. 
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Add 'patch-pyproject
phase.

Change-Id: Idd173b72b1467540c295224072f3740c7f42b0a8
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
262df6c607
gnu: python-dask: Disable some tests. 
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Disable ORC tests and
those that fail due to differences in job id.

Change-Id: I272a77c8291b121b57b02750916f520b52185bbe
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
78d5fb1720
gnu: python-dask: Propagate python-dask-expr. 
* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable.
(python-dask)[propagated-inputs]: Add python-dask-expr.
* gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]:
Remove python-dask.
[native-inputs]: Add python-dask/bootstrap.

Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
22eeb8f16e
gnu: python-dask: Disable all tokenize tests. 
* gnu/packages/python-xyz.scm (python-dask)[arguments]: Ignore the test file.

Change-Id: Icbd4845361aa57c493f473ab87a15ade8a20a65f
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
1295abd0af
Revert "gnu: python-numpy: Update to 1.26.0." 
numba cannot use numpy > 1.24.

This reverts commit 6b8efd211fbd619e80628d2a78f99c6afc18723e.
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
5450886934
gnu: python-numpy: Update to 1.26.0. 
* gnu/packages/python-xyz.scm (python-numpy): Update to 1.26.0.
[build-system]: Use pyproject-build-system.
[arguments]: Move test flags to #:test-flags; add phase
'use-setuptools-backend.
[native-inputs]: Remove gfortran; add replace python-cython with
python-cython-3; add meson/newer and ninja.

Change-Id: I783bbca58624bf6f047056ba21d838f5ecb09ac2
 2024-05-05 22:38:17 +02:00
Ricardo Wurmus
2a7e513803
gnu: python-tabulate: Enable tests and fix version string. 
* gnu/packages/python-xyz.scm (python-tabulate)[arguments]: Enable tests.
[native-inputs]: Add python-pytest and python-setuptools-scm.

Change-Id: I14073151916fd637d83905c03e76b96c390db917
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
24bf2329a4
gnu: python-anndata: Update to 0.10.7. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.10.7.
[arguments]: Patch conftest.py; adjust tests; remove old patch for version
string; add phase 'set-numba-cache-dir.
[native-inputs]: Add python-awkward, python-dask, python-distributed,
python-hatchling, python-hatch-vcs, python-loompy, python-matplotlib,
python-pytest-doctestplus, and python-pytest-xdist.
[propagated-inputs]: Add python-array-api-compat and python-exceptiongroup.

Change-Id: I3099cbfbb1865743c75d32243be9e5a59df1507d
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
eb866b3699
gnu: Add python-array-api-compat. 
* gnu/packages/python-xyz.scm (python-array-api-compat): New variable.

Change-Id: Ibfd701630b41f860c7ad4df57fd3624d9c5b7752
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
a3ff747a48
gnu: Add python-awkward. 
* gnu/packages/python-xyz.scm (python-awkward): New variable.

Change-Id: Ie4f9b12d3662b9029f6e042f9c3a4d547073a6e7
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
fe780b55b4
gnu: Add python-awkward-cpp. 
* gnu/packages/python-xyz.scm (python-awkward-cpp): New variable.

Change-Id: I68f7e314aa6b575eb7135aa5308c327d5f6bf3ea
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
cc67370ca1
gnu: python-partd: Update to 1.4.1. 
* gnu/packages/python-xyz.scm (python-partd): Update to 1.4.1.
[propagated-inputs]: Remove python-blosc.

Change-Id: I3aff28899339f9ffaa47b6f5c81e0e68ce660963
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
dff3357bb6
gnu: python-dask: Update to 2024.4.2. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2024.4.2.
[arguments]: Disable a few tests.

Change-Id: I759ddee2ec49fbf74f368c3313f7215906b0e5a2
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
fef6edecbc
gnu: python-tables: Update to 3.7.0. 
* gnu/packages/python-xyz.scm (python-tables): Update to 3.7.0.
[propagated-inputs]: Add python-packaging and python-py-cpuinfo.

Change-Id: I8653bef9a07bb898933b249aad92ddb2b79b8d85
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
9953207f3e
gnu: python-tabulate: Update to 0.9.0. 
* gnu/packages/python-xyz.scm (python-tabulate): Update to 0.9.0.
[build-system]: Use pyproject-build-system.

Change-Id: If360e5be6433b35308b76bd1284bb6ddb74008e8
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
6be3c24d82
gnu: python-cython-3: Update to 3.0.8. 
* gnu/packages/python-xyz.scm (python-cython-3): Update to 3.0.8.

Change-Id: I9129a7837cefea0b95b0a3c3cdf73997d91f7484
 2024-05-05 22:38:16 +02:00
Ricardo Wurmus
d1eda517f3
gnu: Add python-param. 
* gnu/packages/python-xyz.scm (python-param): New variable.

Change-Id: Idad928488d7c306c969b4484a3cd22661c41d488
 2024-05-05 22:38:15 +02:00
Ricardo Wurmus
83262c971e
gnu: Add python-multiscale-spatial-image. 
* gnu/packages/python-xyz.scm (python-multiscale-spatial-image): New variable.

Change-Id: I05a0b3a93091148917fade831faefb88c13bbc6f
 2024-05-05 22:38:15 +02:00
Ricardo Wurmus
407fcd510b
gnu: Add python-colorcet. 
* gnu/packages/python-xyz.scm (python-colorcet): New variable.

Change-Id: I8b3f6d9a132d028f56330308b034d263e162f0f9
 2024-05-05 22:38:15 +02:00
Ricardo Wurmus
5f186e2f79
gnu: Add python-pyct. 
* gnu/packages/python-xyz.scm (python-pyct): New variable.

Change-Id: Ia207d5aa9d66fd2bf3616049c042fbb12e50928d
 2024-05-05 22:38:15 +02:00
Ricardo Wurmus
536228e65e
gnu: python-pooch: Update to 1.8.1. 
* gnu/packages/python-xyz.scm (python-pooch): Update to 1.8.1.
[arguments]: Enable tests, but not all of them.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools-scm.
[propagated-inputs]: Add python-platformdirs; remove python-appdirs and
python-packaging.

Change-Id: I3a0f73db5c0d78c9cee24c73402e9b1e34e26b4a
 2024-05-05 22:38:15 +02:00
Ricardo Wurmus
749cb3c520
gnu: Add python-dask-image. 
* gnu/packages/python-xyz.scm (python-dask-image): New variable.

Change-Id: I77c22bba69d73ce39681064bfdcc05b2b360ea26
 2024-05-05 22:38:14 +02:00
Sharlatan Hellseher
7d4d0512a0
gnu: python-exif-read: Update to 3.0.0. 
* gnu/packages/python-xyz.scm (python-exif-read): Update to 3.0.0.

Change-Id: I19e0a19041aa943a9f3ecf262077328d52ef4d1d
 2024-04-30 21:36:09 +01:00
Romain GARBAGE
fc63020acc
gnu: jube: Update to version 2.6.1. 
* gnu/packages/python-xyz.scm (jube): Update to new version. Add
`python-pyyaml' to `native-inputs'.

Change-Id: I77e1532f069f2f745b4acb575dc3c4a6861a8945
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2024-04-26 16:52:23 +01:00
Wilko Meyer
17b38b0093
gnu: i3-autotiling: Update to 1.9.1. 
* gnu/packages/python-xyz.scm (i3-autotiling): Update to 1.9.1.

Change-Id: I564e3c53d23830c94eb58465715b1b7809cc74f5
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2024-04-26 16:50:46 +01:00
Ricardo Wurmus
c0c713be66
gnu: python-omegaconf: Fix build system errors. 
* gnu/packages/python-xyz.scm (python-omegaconf)[arguments]: Fix syntax error
in version specification; do not trigger errors on deprecation warnings.

Change-Id: Ida873c11255ffb65d888378cdd77a9205163016a
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
d6af13222e
gnu: python-pydantic-2: Ignore sensitive tests. 
* gnu/packages/python-xyz.scm (python-pydantic-2)[arguments]: Ignore north
star tests.

Change-Id: Ic305f95f8d1399a4d777dad35fcee9e28f16c907
 2024-04-22 11:29:31 +02:00
Ricardo Wurmus
789286ebd9
gnu: python-zarr: Update to 2.17.2. 
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.2.
[arguments]: Delete two flaky tests.

Change-Id: I1ab1c90f17d17a03c6cd76bbeb9112df741cc9c6
 2024-04-22 11:29:30 +02:00
Nicolas Graves
925e6d4072
gnu: python-contourpy: Update to 1.1.1. 
* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.1.1.

Change-Id: I31ac27bb7f41f04c82baba2650012d4730a4b684
 2024-04-22 11:29:30 +02:00
Nicolas Graves
43965c93ae
gnu: python-openpyxl: Update to 3.0.10. 
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 3.0.10.
[build-system]: Use pyproject-build-system.
[arguments]: Delete check phase replacement.

Change-Id: I1a537050f1e9f109189150d0d73e87bbd87dcb00
 2024-04-22 11:29:30 +02:00
Nicolas Graves
2528aabf6f
gnu: python-jinja2: Update to 3.1.2. 
* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.1.2. Format.
[build-system]: Use pyproject-build-system.
[arguments]: Remove uneeded argument.
 2024-04-22 11:29:30 +02:00
Nicolas Graves
1039ec03be
gnu: python-pyproject-metadata: Update to 0.7.1. 
* gnu/packages/python-xyz.scm (python-pyproject-metadata): Update to 0.7.1.
 2024-04-22 11:29:30 +02:00
Ricardo Wurmus
15f4363df0
gnu: Add python-slicerator. 
* gnu/packages/python-xyz.scm (python-slicerator): New variable.

Change-Id: I9f24707f16cb34d25f6423b03fd07ea122d55064
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus
d1e66d2ddf
gnu: Add python-ipfsspec. 
* gnu/packages/python-xyz.scm (python-ipfsspec): New variable.

Change-Id: I1fe0c2523616b9567501ef369c07b61fcacbee81
 2024-04-22 11:29:29 +02:00
Christopher Baines
953253eff3
Merge remote-tracking branch 'savannah/master' into mesa-updates 
Change-Id: I00980ec5dbd9d23ab076995bc79331d136424796
 2024-04-15 10:57:31 +01:00
Jean-Pierre De Jesus DIAZ
f2c5482af4
gnu: coin3D: Rename to coin3d. 
* gnu/packages/graphics.scm (coin3d): New Variable.
(coin3D): Define as deprecated.
(coin3D-4): Point to coin3d.
* gnu/packages/engineering.scm (freecad): Use coin3d instead of coin3D.
* gnu/packages/python-xyz.scm (python-pivy): Ditto.
* gnu/packages/qt.scm (soqt): Ditto.

Change-Id: I4e83e25e80c512350f38024847891eac14723f26
Signed-off-by: Christopher Baines <mail@cbaines.net>
 2024-04-15 10:14:06 +01:00
Christopher Baines
6cae1db889
Merge remote-tracking branch 'savannah/master' into mesa-updates 
Change-Id: Iad185e2ced97067b3dff8fd722435a6c5e2c00e5
 2024-04-09 16:46:34 +01:00
Andrew Jose
1977fa35c5
gnu: Add python-shshsh. 
* gnu/packages/python-xyz.scm (python-shshsh): New variable.

Reviewed-by: Steve George <steve@futurile.net>
Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: Iadd75c769a4391195b32789590f94fd8afbe21b6
 2024-04-07 19:40:00 +01:00
TakeV
fd116510b2
gnu: Add python-iterable-io. 
* gnu/packages/python-xyz.scm (python-iterable-io): New variable.

Change-Id: Icd4b10e27b5f4963fd3e3ea516676e84b3c5ecd4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-04-06 23:27:36 +01:00
Liliana Marie Prikler
d92bb7c542
gnu: Add python-colorthief. 
* gnu/packages/python-xyz.scm (python-colorthief): New variable.

Reviewed-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2024-04-06 06:36:16 +02:00
John Kehayias
cc258692e0
gnu: python-cairocffi: Update to 1.6.1. 
The previous version failed to build after the cairo update.

* gnu/packages/python-xyz.scm (python-cairocffi): Update to 1.6.1.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-flit-core and python-pikepdf.
[arguments]: Remove now unneeded disable-linters phase.

Change-Id: I3f3119834b7021c52fdfc810d9a3c16ee5c419f3
 2024-04-03 17:18:16 -04:00
Vinicius Monego
a17976e975
gnu: python-qasync: Update to 0.27.1. 
* gnu/packages/python-xyz.scm (python-qasync): Update to 0.27.1.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-Expressions.
[native-inputs]: Remove python-pytest-runner. Add python-poetry-core.

Change-Id: I3290a8b59f393c7bea6f200b5e538ad4be14d349
 2024-03-30 09:23:24 -03:00
Vinicius Monego
8541aaa07f
gnu: python-immutabledict: Enable tests. 
* gnu/packages/python-xyz.scm (python-immutabledict): Enable tests.

Change-Id: I5ebd0fac21a5aa26785a2ced115b736ee5e7952c
 2024-03-30 09:23:15 -03:00
Vinicius Monego
064fcf007b
gnu: python-immutabledict: Update to 4.2.0. 
* gnu/packages/python-xyz.scm (python-immutabledict): Update to 4.2.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-poetry-core.

Change-Id: Ifc3499f6e01efefdcb58aadcae87bbb5a0295d46
 2024-03-30 08:36:34 -03:00
Liliana Marie Prikler
a915a57d91
Merge branch 'gnome-team' 2024-03-30 09:47:43 +01:00
Vinicius Monego
dbe16f5a68
gnu: python-celery: Update to 5.3.6. 
* gnu/packages/python-xyz.scm (python-celery): Update to 5.3.6.
[build-system]: Use pyproject-build-system.
[arguments]: Replace pytz with tzdata in the relax-requirements phase. Do not
override the check phase, skip tests in #:test-flags instead.
[native-inputs]: Add python-pytest-click.
[propagated-inputs]: Add python-tzdata. Remove python-pytz.

Change-Id: I4cb6a1c6712d5b54f4d9a6731447e9459e8ff81a
 2024-03-29 16:19:51 -03:00
Vinicius Monego
1f3173786a
gnu: python-vine: Update to 5.1.0. 
* gnu/packages/python-xyz.scm (python-vine): Update to 5.1.0.
[build-system]: Use pyproject-build-system.

Change-Id: I2621eb21deb516d16e9cc50ff9237aed1b6b46b8
 2024-03-29 16:19:51 -03:00