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114083 Commits (3ae9922530ef8a01f1f4207cb1df235d6da007ca)

Author SHA1 Message Date
Ricardo Wurmus 1e7943fe99
gnu: r-chippeakanno: Update to 3.34.0. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus e3732dcda4
gnu: r-pepsnmr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-pepsnmr): Update to 1.18.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus 54614fc9d5
gnu: r-graph: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.78.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus c0d21bfe64
gnu: r-multtest: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.56.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus e7bc7ec54f
gnu: r-mbkmeans: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.16.0.
 2023-04-29 20:27:59 +02:00
Ricardo Wurmus 15daabb22f
gnu: r-diffbind: Update to 3.10.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 4985c9601e
gnu: r-greylistchip: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ef2994f256
gnu: r-apeglm: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.22.0.
[native-inputs]: Add r-rmarkdown.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus df0d0504fb
gnu: r-qvalue: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 4d031b58f1
gnu: r-quantsmooth: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-quantsmooth): Update to 1.66.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 45e8cd7612
gnu: r-oligo: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.64.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus eef6764047
gnu: r-oligoclasses: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.62.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus adfdd8e86e
gnu: r-geneplotter: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.78.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus e82e8329f5
gnu: r-zellkonverter: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 61b9cc9b50
gnu: r-zlibbioc: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.46.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus d9a9bcf5c6
gnu: r-xvector: Update to 0.40.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.40.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ed59644ba0
gnu: r-xmapbridge: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 753beb909f
gnu: r-xina: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xina): Update to 1.18.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 681a784204
gnu: r-vsn: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.68.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 7a6fa454aa
gnu: r-variantannotation: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.46.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 998c7242c2
gnu: r-tximport: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.28.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ea8a5b5d01
gnu: r-topgo: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.52.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 221c9b3914
gnu: r-systempiper: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus ec18aab140
gnu: r-sva: Update to 3.48.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.48.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 77e5cffb35
gnu: r-summarizedexperiment: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 028e3d5219
gnu: r-structuralvariantannotation: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.16.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 08ca51d2e0
gnu: r-stringdb: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.12.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus b54be030aa
gnu: r-stager: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.22.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 5698bf6fed
gnu: r-slingshot: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.8.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 15caa80904
gnu: r-scds: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scds): Update to 1.16.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 93c0b52f6a
gnu: r-trajectoryutils: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.8.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus a48cb51ed0
gnu: r-transcriptr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.28.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus b28d21fff2
gnu: r-simplifyenrichment: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.10.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 8db5bea2ba
gnu: r-shortread: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.58.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 7c53819208
gnu: r-shinymethyl: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.36.0.
[propagated-inputs]: Remove r-illuminahumanmethylation450kmanifest and r-matrixstats; add
r-biobase, r-htmltools, and r-matrixgenerics.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus 6264a7cca0
gnu: r-seqpattern: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.32.0.
 2023-04-29 20:27:58 +02:00
Ricardo Wurmus bbdb686878
gnu: r-seqlogo: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.66.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 8e9d0d590f
gnu: r-scry: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-scry): Update to 1.12.0.
[propagated-inputs]: Remove r-hdf5array.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 3cd53df25a
gnu: r-scmap: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 70433802aa
gnu: r-scdblfinder: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.14.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 22f63061e3
gnu: r-scannotatr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.6.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 2521248770
gnu: r-rtracklayer: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.60.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 04a5521933
gnu: r-rsamtools: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.16.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus c2f9c0af28
gnu: r-rhdf5filters: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.12.0.
[arguments]: Add phase 'use-system-libraries.
[inputs]: Add bzip2, c-blosc, and zstd:lib.
[native-inputs]: Add r-biocstyle and r-rmarkdown.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 4e9e8ed194
gnu: r-rhdf5: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.44.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus cc5dc923a6
gnu: r-regioner: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 07a18fe524
gnu: r-rcas: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.26.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus bc5d14d246
gnu: r-rbgl: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.76.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 70af2c3137
gnu: r-protgenerics: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.32.0.
 2023-04-29 20:27:57 +02:00
Ricardo Wurmus 8e08912fcd
gnu: r-pcamethods: Update to 1.92.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.92.0.
 2023-04-29 20:27:57 +02:00