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114083 Commits (3ae9922530ef8a01f1f4207cb1df235d6da007ca)

Author SHA1 Message Date
Ricardo Wurmus 176c45cb21
gnu: r-complexheatmap: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.16.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f86ea9868a
gnu: r-chipseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.50.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 219901a7b2
gnu: r-chipseeker: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0.
[propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble,
and r-yulab-utils.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 6c700d8b3a
gnu: r-champ: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-champ): Update to 2.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 7b4443f365
gnu: r-category: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-category): Update to 2.66.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 5d526f71c8
gnu: r-bsgenome: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 9201a7728b
gnu: r-biovizbase: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.48.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus bbd90f85b9
gnu: r-biostrings: Update to 2.68.0. 
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus c9d5ec9e66
gnu: r-biocparallel: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus d0199e0c5c
gnu: r-biomart: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 766fb8a21c
gnu: r-biobase: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.60.0.
[native-inputs]: Add r-knitr.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus b8c4b8b44f
gnu: r-bamsignals: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.32.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 968878ef27
gnu: r-aroma-light: Update to 3.30.0. 
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.30.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 83b381a95b
gnu: r-annotationhub: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus f6c878674f
gnu: r-annotationforge: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus aa97ff9c34
gnu: r-annotationfilter: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 46ff186f73
gnu: r-annotationdbi: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus d9d1b77c84
gnu: r-annotate: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 4f2c3411ec
gnu: r-affxparser: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 1b4dd53a4f
gnu: r-affyio: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.70.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 5d8d8c2256
gnu: r-affycoretools: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.72.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus a7485d9850
gnu: r-affycontam: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.58.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus b121b78bda
gnu: r-affycomp: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 6a19dd1e21
gnu: r-affy: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 21b305edbe
gnu: r-italics: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-italics): Update to 2.60.0.
 2023-04-29 20:27:55 +02:00
Ricardo Wurmus 669d0d17da
gnu: r-isoformswitchanalyzer: Update to 1.21.0. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.21.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus a0846151b3
gnu: r-iranges: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 116bc67509
gnu: r-infercnv: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 09260401c4
gnu: r-ideoviz: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.36.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus e057271297
gnu: r-bluster: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.10.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 0ef0e70d81
gnu: r-dss: Update to 2.48.0. 
* gnu/packages/bioconductor.scm (r-dss): Update to 2.48.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 72bfb25766
gnu: r-drimseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c901f7c4f3
gnu: r-dmrcate: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus b23aac21d5
gnu: r-derfinderhelper: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.34.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus b7b1423882
gnu: r-delayedarray: Update to 0.25.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.25.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c179c05e35
gnu: r-deepsnv: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.46.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 57bb01b808
gnu: r-decoupler: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 28b2d8a1e3
gnu: r-deconvr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.6.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 228c0fae2b
gnu: r-decontam: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.20.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 37a7539db3
gnu: r-deconrnaseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.42.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 8ccd86a17b
gnu: r-decomptumor2sig: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.16.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus c9794ffe59
gnu: r-decipher: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.28.0.
 2023-04-29 20:27:54 +02:00
Ricardo Wurmus 52e738d346
gnu: r-debcam: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.18.0.
[source]: Delete bundled Java archives.
[arguments]: Add phase 'build-jar; add phase 'strip-jar-timestamps; do a fake
installation and disable tests due to a regression in R 4.3.0.
[inputs]: Replace openjdk with icedtea:jdk; add java-pj.
[native-inputs]: Add zip.
 2023-04-29 20:27:17 +02:00
Ricardo Wurmus 2bf6f659c4
gnu: Add java-pj. 
* gnu/packages/java.scm (java-pj): New variable.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 4837210129
gnu: r-dearseq: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 8f93a53a4c
gnu: r-damefinder: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.12.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 01ba2a24d2
gnu: r-dama: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-dama): Update to 1.72.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 9b305554a3
gnu: r-cummerbund: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.42.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus 6233b26d1d
gnu: r-coverageview: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.38.0.
 2023-04-29 20:09:33 +02:00
Ricardo Wurmus f869abfae3
gnu: r-cardelino: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.2.0.
 2023-04-29 20:09:33 +02:00