0f4f5715a4
gnu: p7zip: Move *asm inputs to native-inputs.
...
* gnu/packages/compression.scm (p7zip)[inputs]: Move yasm, nasm ...
[native-inputs]: ... to here.
2019-12-04 10:55:28 +02:00
bcda07797a
gnu: lablgtk: Use a source file-name.
...
* gnu/packages/ocaml.scm (lablgtk)[source]: Add 'file-name'.
2019-12-04 10:55:28 +02:00
e21b668e52
gnu: r-rversions: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-rversions): Update to 2.0.1.
2019-12-04 09:39:43 +01:00
14ebd6f762
gnu: r-survival: Update to 3.1-8.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.1-8.
2019-12-04 09:39:36 +01:00
41728d234b
gnu: r-all: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
2019-12-04 09:36:34 +01:00
545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
2019-12-04 09:36:15 +01:00
b86f77469b
gnu: r-arrmdata: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
2019-12-04 09:35:59 +01:00
ced61edf5d
gnu: r-abadata: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
2019-12-04 09:35:44 +01:00
eed2766a45
gnu: r-do-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
2019-12-04 09:35:26 +01:00
25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
2019-12-04 09:35:08 +01:00
6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
2019-12-04 09:34:47 +01:00
c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:34:13 +01:00
1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:54 +01:00
d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:35 +01:00
f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:33:09 +01:00
717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
2019-12-04 09:32:48 +01:00
e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:32:22 +01:00
411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:32:03 +01:00
f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:46 +01:00
7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:19 +01:00
b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:58 +01:00
1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:35 +01:00
f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:29:56 +01:00
51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:29:26 +01:00
21f6dae73d
gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:28:54 +01:00
a47646bd05
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:28:34 +01:00
88e7c7db59
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:28:04 +01:00
bf05ece1a2
gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:27:15 +01:00
87073b7ecb
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:26:22 +01:00
149f351f38
gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
2019-12-04 09:25:10 +01:00
6998ecba74
gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
2019-12-04 09:24:09 +01:00
19e67f8216
gnu: emacs-olivetti: Update to 1.8.1.
...
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 1.8.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 09:00:38 +01:00
d6445fa690
gnu: emacs-irony-mode: Update to 1.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.4.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 09:00:31 +01:00
362e5f9408
gnu: emacs-elisp-demos: Update to 2019.12.01.
...
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2019.12.01.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 09:00:22 +01:00
17f88b9c01
gnu: emacs-doom-modeline: Update to 2.8.0.
...
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 08:59:43 +01:00
312ec128af
gnu: python-pandas: Move to (gnu packages python-science).
...
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
2019-12-04 08:56:36 +01:00
dc3e62a494
gnu: handbrake: Upgrade to 1.3.0.
...
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove
patch.
[native-inputs]: Remove cmake and curl.
[inputs]: Add dav1d and numactl.
[arguments]: Add "--disable-nvenc" to configure flags in place of patch.
Adjust "bootstrap" phase in response to upstream changes.
Add "patch-SHELL" and "relax-reqs" phases.
2019-12-03 22:20:22 -06:00
32c06affca
guix-install.sh: Use a deterministic umask.
...
Users with strict umasks (e.g. 0077) would end up with an unreadable
/gnu (mode 0700) and no way to run guix.
Reported by A. <@aaap:matrix.org> on #guix.
* etc/guix-install.sh (main): Set umask before installing anything.
2019-12-04 03:59:04 +01:00
4c16ffd383
gnu: tcc: Add search paths and drop the wrapper.
...
* gnu/packages/c.scm (tcc): Add native search paths.
(tcc-wrapper): Remove variable.
2019-12-03 22:18:08 +01:00
1b6c5e8039
gnu: cmocka: Update to 1.1.5.
...
* gnu/packages/check.scm (cmocka): Update to 1.1.5.
2019-12-03 21:50:04 +01:00
efa45291b7
gnu: girara: Update to 0.3.3.
...
* gnu/packages/gtk.scm (girara): Update to 0.3.3.
2019-12-03 21:50:04 +01:00
741b505307
gnu: libcdio: Update to 2.1.0.
...
* gnu/packages/cdrom.scm (libcdio): Update to 2.1.0.
2019-12-03 21:50:04 +01:00
a344a1af07
gnu: libcdio-paranoia: Update to 10.2+2.0.0.
...
* gnu/packages/cdrom.scm (libcdio-paranoia): Update to 10.2+2.0.0.
2019-12-03 21:50:03 +01:00
6b9ec7b0ef
gnu: libburn: Update to 1.5.2.
...
* gnu/packages/cdrom.scm (libburn): Update to 1.5.2.
2019-12-03 21:50:03 +01:00
dfe11a489b
gnu: r-rsqlite: Update to 2.1.3.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.3.
2019-12-03 14:54:20 +01:00
64d576e514
gnu: r-roxygen2: Update to 7.0.2.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.2.
2019-12-03 14:54:13 +01:00
3fff4de729
gnu: r-testthat: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.1.
2019-12-03 14:54:06 +01:00
6a7ac0a829
gnu: r-rspectra: Update to 0.16-0.
...
* gnu/packages/cran.scm (r-rspectra): Update to 0.16-0.
2019-12-03 14:53:59 +01:00
8aab9b98cf
gnu: r-sjplot: Update to 2.8.1.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.1.
2019-12-03 14:53:50 +01:00
de5092bab0
gnu: r-bayesplot: Update to 1.7.1.
...
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.1.
2019-12-03 14:53:42 +01:00
Efraim Flashner
Ricardo Wurmus
Brett Gilio
Eric Bavier
Tobias Geerinckx-Rice
Andreas Enge