me
/
guix
Archived
1
0
Fork 0
Commit Graph

118978 Commits (40cff060fde60848c15c4b9605e92f98bff0b6d2)

Author SHA1 Message Date
Ricardo Wurmus f13e407689
gnu: r-org-dr-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.18.0.

Change-Id: Icb7f74c83ff7189c7b02964fcb25bac6610fd790
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 8445ad15ec
gnu: r-org-dm-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.18.0.

Change-Id: Ic50a64af9d5b76a4c7cb8864e8e723c533218e19
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 0adeabcf53
gnu: r-org-ce-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.18.0.

Change-Id: Id83d4e64b80ce01abdb2fe06735e0af6b7ebac10
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 297fc0d76c
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Update to 0.6.1.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19): Update to 0.6.1.

Change-Id: I142318c4854c75f27bcd1bfe4bfc389cbc8b3725
2024-01-22 13:54:44 +01:00
Ricardo Wurmus c5a934df85
gnu: r-go-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.18.0.

Change-Id: I90ff2421b742369847353aaf32cf8bc4651afda7
2024-01-22 13:54:44 +01:00
Ricardo Wurmus d9de950ac6
gnu: r-genomeinfodbdata: Update to 1.2.11.
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.11.

Change-Id: Iacb39950f70c8affe457330df8b43260e71ab548
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 2ee9cce50f
gnu: r-bsgenome-mmusculus-ucsc-mm10: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): Update to 1.4.3.

Change-Id: Idbf573d2b4931550122119eed67879c2b13ed52f
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 6ee0d63dfc
gnu: r-reactome-db: Update to 1.86.2.
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.86.2.

Change-Id: I8312c151f89ef27c5f75adbdf27c098e77f05453
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 287c5b085b
gnu: r-org-sc-sgd-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.18.0.

Change-Id: I1f7a497f0b36b1fe336343e215fe5c3f179b11ed
2024-01-22 13:54:44 +01:00
Ricardo Wurmus 8ec5a25eff
gnu: r-org-bt-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.18.0.

Change-Id: I4385882eeb83326af88141b301f892632f6cf678
2024-01-22 13:54:44 +01:00
Ricardo Wurmus d2573f4e28
gnu: r-org-eck12-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.18.0.

Change-Id: Ic8b25521c9a735522c69e3d696d8a514f8d6d17c
2024-01-22 13:54:44 +01:00
Jean-Pierre De Jesus DIAZ d264237d55
gnu: make-crust-package: Unite firmware and tools.
* gnu/packages/firmware.scm (make-crust-package): Perform union of
make-crust-firmware and make-crust-tools.
* gnu/packages/firmware.scm (make-crust-firmware): New procedure.

Change-Id: I687bb6d53aae9bd60ed988baf9d17e92f31faa7b
2024-01-22 11:26:57 +01:00
Jean-Pierre De Jesus DIAZ 938f153784
gnu: Add make-crust-tools.
* gnu/packages/firmware.scm (make-crust-tools): New procedure.

Change-Id: Iac05ecf1796e4c10692a423c12423ea9b078d141
2024-01-22 11:26:57 +01:00
Jean-Pierre De Jesus DIAZ dde246ed41
gnu: make-crust-package: Use or1k-elf as target.
* gnu/packages/firmware.scm (make-crust-package): Use or1k-elf as the
target.

Change-Id: I6c8bf053527f1e12e35402f18cebf8e75557c788
2024-01-22 11:26:56 +01:00
Jean-Pierre De Jesus DIAZ fa0b2cdab3
gnu: make-crust-package: Update to 0.6.
* gnu/packages/firmware.scm (make-crust-package): Update to 0.6.  Do not
install host tool as it is not built by default.

Change-Id: Ia79ae8208589601d32235f6d8ace9dce3f8d74f9
2024-01-22 11:26:56 +01:00
Jean-Pierre De Jesus DIAZ e5a00639aa
gnu: make-crust-package: Memoize.
* gnu/packages/firmware.scm (make-crust-package): Use mlambda.

Change-Id: I2d916b96bc650f3731a69505e086cf8f8f470809
2024-01-22 11:26:56 +01:00
Jean-Pierre De Jesus DIAZ ae7da5cbf0
gnu: make-crust-package: Use shorter synopsis.
* gnu/packages/firmware.scm (make-crust-package) <synopsis>: Make it
short.

Change-Id: I8b93b25a9a6a75aaa92ffa590d0fd46a5511fd49
2024-01-22 11:26:56 +01:00
Jean-Pierre De Jesus DIAZ 937e64537e
gnu: Add gcc-cross-or1k-elf-toolchain.
* gnu/packages/cross-toolchain.scm (gcc-cross-or1k-elf-toolchain): New
variable.

Change-Id: Iaf7ed60dbbe116a5efbad8e94be9b2dee51faf15
2024-01-22 11:26:56 +01:00
Jean-Pierre De Jesus DIAZ 82aef470ce
gnu: cross-gcc-toolchain: Use fixed name.
* gnu/packages/cross-base.scm (cross-gcc-toolchain) <name>: Always use
gcc-cross- prefix regardless of TARGET having a C standard library or not.

Change-Id: I5cbe89c61e5bd324a385db17c27131ea5ef75669
2024-01-22 11:26:56 +01:00
Nicolas Goaziou 9f6aab9591
gnu: emacs-orgalist: Fix build.
* gnu/packages/emacs-xyz.scm (emacs-orgalist)[source]<origin>: Use correct extension.

Change-Id: Idea5aa97de9838b4a7bfabd7e7609727bd925a71
2024-01-22 09:49:45 +01:00
Nicolas Goaziou 9b65b60b97
gnu: notmuch: Update to 0.38.2.
* gnu/packages/mail.scm (notmuch): Update to 0.38.2.
* gnu/packages/patches/notmuch-emacs-test-output.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Apply file deletion.

Change-Id: I60d0487f2258ed5ef8602de7a624686c5f012a4f
2024-01-22 09:32:57 +01:00
Nicolas Goaziou 48c52ed486
gnu: emacs-ebdb: Fix build.
* gnu/packages/emacs-xyz.scm (emacs-ebdb)[propagated-inputs]: Add
EMACS-ORG-ROAM.

Change-Id: I77c2373dcc50ed4a832bf1d493c44eb0b96ebc7b
2024-01-22 09:14:37 +01:00
Sharlatan Hellseher 17e0b03824
gnu: cambalache: Fix buld.
As seen in http://ci.guix.gnu.org/build/3338535/log/raw.

* gnu/packages/gnome.scm (cambalache): Fix build.
[inputs]: Swap duplicated webkitgtk to webkitgtk-for-gtk3.

Change-Id: I9604159d3aa343e0bcb539cfade520ddd97cb489
2024-01-21 23:30:20 +00:00
Nicolas Goaziou 9e9c1613dd
gnu: emacs-org-fc: Update to 0.4.0.
* gnu/packages/emacs-xyz.scm (emacs-org-fc): Update to 0.4.0.
[arguments]<#:phases>: Fix build error by adding missing (require 'eieio).
<#:test-command>: Load more tests.
[native-inputs]: Add EMACS-EL-MOCK.

Change-Id: Ibdaf38f3dd8f3018bf2b7b53cd94626b983fc953
2024-01-22 00:20:56 +01:00
Nicolas Goaziou a9d5628f5b
gnu: emacs-el-mock: Update to 1.25.1-1.6cfbc9d.
* gnu/packages/emacs-xyz.scm (emacs-el-mock): Update to 1.25.1-1.6cfbc9d.

Change-Id: I2e13b8854f9089f68f1ec9eb0fa671e760ea9ec3
2024-01-22 00:20:56 +01:00
Nicolas Goaziou b63b53b64e
gnu: emacs-plz: Update to 0.7.2.
* gnu/packages/emacs-xyz.scm (emacs-plz): Update to 0.7.2.

Change-Id: I24ef66998d9a8b83169c185974f2ce2b3697dd4c
2024-01-22 00:20:55 +01:00
Nicolas Goaziou c3d8f39b5b
gnu: emacs-pg: Update to 0.27.
* gnu/packages/emacs-xyz.scm (emacs-pg): Update to 0.27.

Change-Id: I10c65f30e790d461c925352b993aa4dc3d6696dd
2024-01-22 00:20:55 +01:00
Nicolas Goaziou 1c17b444c6
gnu: emacs-org-re-reveal: Update to 3.25.1.
* gnu/packages/emacs-xyz.scm (emacs-org-re-reveal): Update to 3.25.1.

Change-Id: I79a195184b5d2ad842e4738862086c0b595b967c
2024-01-22 00:20:55 +01:00
Nicolas Goaziou 396d84071f
gnu: emacs-org-ql: Update to 0.8.4.
* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.8.4.

Change-Id: Idb2e25155a62cbf699367a749194dce1852339ec
2024-01-22 00:20:55 +01:00
Nicolas Goaziou 3485c7bfef
gnu: emacs-julia-snail: Update to 1.3.1.
* gnu/packages/emacs-xyz.scm (emacs-julia-snail): Update to 1.3.1.

Change-Id: I4cd574e2864ba23d0edd1331932ecef974466be6
2024-01-22 00:20:55 +01:00
Nicolas Goaziou c6daf5d617
gnu: emacs-helm: Update to 3.9.7.
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.9.7.

Change-Id: I08be44a04cb5e829517cc6d406efa546b1c5c763
2024-01-22 00:20:54 +01:00
Nicolas Goaziou f76fb72bec
gnu: emacs-hackernews: Update to 0.7.0.
* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.7.0.

Change-Id: Iba7bc8f02bf747fd2ac80a96bedffd47fe572109
2024-01-22 00:20:54 +01:00
Nicolas Goaziou b819853ade
gnu: emacs-gptel: Update to 0.6.0.
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.6.0.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: Ideaef04c6a4e76dc4d86fc490b320e01ce205d02
2024-01-22 00:20:54 +01:00
Nicolas Goaziou 510a4ebe96
gnu: emacs-elisp-demos: Improve package style.
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos)[arguments]: Use
G-expressions.
<#:include>: Use default include.

Change-Id: I44960fa1d7ddec2d15e6927aa76eafb32a03e627
2024-01-22 00:20:54 +01:00
Nicolas Goaziou c522be3ef3
gnu: emacs-elisp-demos: Update to 2024.01.16.
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2024.01.16.

Change-Id: Ia23a78b139d3182fd2452658de2f0fbafd052fff
2024-01-22 00:20:53 +01:00
Nicolas Goaziou 4a58794095
gnu: emacs-edit-indirect: Update to 0.1.11.
* gnu/packages/emacs-xyz.scm (emacs-edit-indirect): Update to 0.1.11.

Change-Id: I4400a25c749aef604e6ec0afd79df965cf62a831
2024-01-22 00:20:53 +01:00
Nicolas Goaziou 9a4ca3332f
gnu: emacs-dtrt-indent: Update to 1.16.
* gnu/packages/emacs-xyz.scm (emacs-dtrt-indent): Update to 1.16.

Change-Id: I55b98386433817c8423d8a7d4c868e3e27a16f46
2024-01-22 00:20:53 +01:00
Nicolas Goaziou 303765a0ec
gnu: emacs-clj-refactor: Update to 3.11.3.
* gnu/packages/emacs-xyz.scm (emacs-clj-refactor): Update to 3.11.3.

Change-Id: Ifd6131fa4c1360785c2a8e061353f269fcb1c23d
2024-01-22 00:20:53 +01:00
Nicolas Goaziou 15bdc7215b
gnu: emacs-cider: Update to 1.13.0.
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.13.0.

Change-Id: I0186168caf932111a490f993cc085b455d35765a
2024-01-22 00:20:52 +01:00
Nicolas Goaziou 85637f78c4
gnu: emacs-boon: Update to 1.3.
* gnu/packages/emacs-xyz.scm (emacs-boon): Update to 1.3.

Change-Id: I0c62dc2539d460ed6ca387d4c00e3640d65b72c0
2024-01-22 00:20:52 +01:00
Nicolas Goaziou 8ec813f7b2
gnu: emacs-log4e: Update to 0.4.0.
* gnu/packages/emacs-xyz.scm (emacs-log4e): Update to 0.4.0.

Change-Id: I96d0496155e15cd2dc58c5332f8283541070e5f0
2024-01-22 00:20:52 +01:00
Nicolas Goaziou a0b297fd9a
gnu: emacs-adwaita-dark-theme: Update to 1.3.0.
* gnu/packages/emacs-xyz.scm (emacs-adwaita-dark-theme): Update to 1.3.0.

Change-Id: I6934d7302786ba2b64f3395edc6a77b2f2883485
2024-01-22 00:20:52 +01:00
Nicolas Goaziou bf7ef80167
gnu: emacs-frecency: Update to 1.0.
* gnu/packages/emacs-xyz.scm (emacs-frecency): Update to 1.0.

Change-Id: Id3491d73081f768adb7eaa542c48fed6791372f6
2024-01-22 00:20:52 +01:00
Dakota Logan ecae012c80
gnu: emacs-org-modern: Update to 1.1.
* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 1.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: Id009309ba4c5ad1d7db860e5748318cfe5a587bb
2024-01-22 00:20:51 +01:00
Nicolas Goaziou ddf2c7a1d2
gnu: emacs-yeetube: Update to 2.0.9.
* gnu/packages/emacs-xyz.scm (emacs-yeetube): Update to 2.0.9.
[arguments]<#:phases>: Skip check looking for mpv and yt-dlp executables.
[propagated-inputs]: Add EMACS-COMPAT.

Change-Id: I826a2e9f9ab510148c4e29f770394ea7b953fa07
2024-01-22 00:20:51 +01:00
Nicolas Goaziou 3cee87f947
gnu: emacs-emms-print-metadata: Update to 18.
* gnu/packages/emacs-xyz.scm (emacs-emms-print-metadata): Update to 18.

Change-Id: I65dd48807f9d948fe70ab4516f7e10c32018fcd5
2024-01-22 00:20:51 +01:00
Nicolas Goaziou c9d1926a72
gnu: emacs-persist: Update to 0.6.
* gnu/packages/emacs-xyz.scm (emacs-persist): Update to 0.6.

Change-Id: I05800e343e5225e6cc556ba69f87d5716707b7a0
2024-01-22 00:20:51 +01:00
Nicolas Goaziou 1f0d72371c
gnu: emacs-ebdb: Update to 0.8.22.
* gnu/packages/emacs-xyz.scm (emacs-ebdb): Update to 0.8.22.

Change-Id: I658b52bc67c3a57ff873af9a9d92d7309b2dc7f2
2024-01-22 00:20:50 +01:00
Nicolas Goaziou 666cdecebd
gnu: emacs-kind-icon: Update to 0.2.2.
* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.2.2.

Change-Id: Ic65954c9c4c83bd7567dbc92bf0d7df4d1718abe
2024-01-22 00:20:50 +01:00
Nicolas Goaziou c262ef84c0
gnu: emacs-csv-mode: Update to 1.23.
* gnu/packages/emacs-xyz.scm (emacs-csv-mode): Update to 1.23.

Change-Id: I72d0c1d7e39ae7d44c52eac2b0d9bb431a3c3291
2024-01-22 00:20:50 +01:00
Nicolas Goaziou 4c106455ca
gnu: emacs-orgalist: Update to 1.14.
* gnu/packages/emacs-xyz.scm (emacs-orgalist): Update to 1.14.

Change-Id: Ic1914d895f3f2ff2206a2d5c5e471c9107564713
2024-01-22 00:20:50 +01:00
Nicolas Goaziou 4a38b799eb
gnu: emacs-debbugs: Update to 0.38.
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.38.

Change-Id: I8bbb79e0cd3f832ae26a73f2606ada50ca773098
2024-01-22 00:20:50 +01:00
Nicolas Goaziou 8aa6b3a617
gnu: emacs-auctex: Update to 13.3.0.
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.3.0.

Change-Id: I174022a198a5ce12e7cb8a9fe0e290ae7b8031db
2024-01-22 00:20:49 +01:00
Cayetano Santos 741581b221
gnu: emacs-helm-make: Update to 0.2.0-0.ebd71e8.
* gnu/packages/emacs-xyz.scm (emacs-helm-make): Update to 0.2.0-0.ebd71e8.

Change-Id: I5bc5888eb7ff69af769921b0751e625c43a666b6
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-01-22 00:20:49 +01:00
Nicolas Graves 119d1e5939
gnu: Add emacs-org-glossary.
* gnu/packages/emacs-xyz.scm (emacs-org-glossary): New variable.

Change-Id: Id087b723709ac5afb7dda0da15eac610c8ab218e
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-01-22 00:20:49 +01:00
Suhail 79fafbe33c
gnu: Add emacs-ox-tufte.
* gnu/packages/emacs-xyz.scm (emacs-ox-tufte): New variable.

Change-Id: Iaaff4b08eddb8f38b39f003e70821ace6c937c86
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-01-22 00:20:49 +01:00
Peter Polidoro 37cbd7a27c
gnu: Add emacs-golden-ratio.
* gnu/packages/emacs-xyz.scm (emacs-golden-ratio): New variable.

Change-Id: I44de02989b8dadd4a395374fe078d4255a210028
2024-01-22 00:20:49 +01:00
Suhail a6ba98f1da
gnu: emacs-org: Update to 9.6.17.
* gnu/packages/emacs-xyz.scm: Update to 9.6.17.

Change-Id: I8f3a76631b588151cceca755730dfd8b7daf248a
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-01-22 00:20:48 +01:00
Andrew Jose 661d29894c
gnu: Add emacs-flexoki-themes.
* gnu/packages/emacs-xyz.scm (emacs-flexoki-themes): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
Change-Id: Ic69965014234ef7c6ef2276bd7f100b466a8b327
2024-01-22 00:20:48 +01:00
Ricardo Wurmus e775f704c8
gnu: Add r-bodymaprat.
* gnu/packages/bioconductor.scm (r-bodymaprat): New variable.

Change-Id: I6843b957d5722f4c5460796ba41effee5717ae45
2024-01-21 23:54:23 +01:00
Wilko Meyer d3c3922a8f
gnu: linux-libre 6.1: Update to 6.1.74.
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.74.
(linux-libre-6.1-pristine-source): Update hash.

Change-Id: Ic6186373d0f4af011e22acf4a5bd0753af5b0834
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-21 15:22:26 -05:00
Wilko Meyer d04b26ed47
gnu: linux-libre 6.6: Update to 6.6.13.
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.13.
(linux-libre-6.6-pristine-source): Update hash.

Change-Id: I489472a5cac6f1e27868f9e3064cc265a3fb075a
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-21 15:22:26 -05:00
Wilko Meyer f53f90ebb8
gnu: linux-libre 6.7: Update to 6.7.1.
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.1.
(linux-libre-6.7-pristine-source): Update hash.

Change-Id: I466a1c0ff4dea0efc9c48fcc670a1adebe6e3c00
Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-21 15:22:23 -05:00
Sharlatan Hellseher b9e74d092d
gnu: python-scikit-fem: Update to 9.0.1.
* gnu/packages/python-science.scm (python-scikit-fem): Update to 9.0.1.
[arguments]<#:test-flags>: Drop it to activate all tests.
[native-inputs]: Add python-autograd, python-pyamg, and python-shapely.

Change-Id: Ic4706196026bd5756b4db8230b15efacdca7d463
2024-01-21 17:40:18 +00:00
Felix Gruber 5f93aa182a
gnu: Add python-pyamg.
* gnu/packages/python-science.scm (python-pyamg): New variable.

Change-Id: Ibf39fecd14d4e6fd72078b217737e5e5cbbf2321
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-21 17:18:29 +00:00
Nicolas Goaziou 121de47dec
gnu: converseen: Update to 0.12.0.2.
* gnu/packages/image.scm (converseen): Update to 0.12.0.2.
[arguments]<#:configure-flags>: Use Qt6.
[native-inputs, inputs]: Use Qt6.
* gnu/packages/patches/converseen-hide-non-free-pointers.patch: Update patch.

Change-Id: I6b6dc200b1b98115400854b2ff77cc805df45078
2024-01-21 15:48:36 +01:00
Petr Hodina f649f82053
gnu: Add moonlight-qt.
* gnu/packages/games.scm (moonlight-qt): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2024-01-21 16:01:07 +03:00
Petr Hodina 5034e541e6
gnu: Add moonlight-common.
* gnu/packages/games.scm (moonlight-common): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
Change-Id: Ibf379d85fac0bdc000fdf56a3c850bb8a1067330
2024-01-21 16:01:04 +03:00
Petr Hodina 14db6616e8
gnu: Add h264bitstream.
* gnu/packages/video.scm (h264bitstream): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2024-01-21 16:00:51 +03:00
Petr Hodina cbb4d8cb27
gnu: Add enet-moonlight.
* gnu/packages/networking.scm (enet-moonlight): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2024-01-21 16:00:48 +03:00
Petr Hodina 646c1c093f
gnu: Add qmdnsengine.
* gnu/packages/qt.scm (qmdnsengine): New variable.

Change-Id: I6838ed2574424c03ecbb21d9265d6a33c3cb4c91
2024-01-21 16:00:16 +03:00
Ricardo Wurmus 1d00a9edff
gnu: Add r-protgear.
* gnu/packages/bioconductor.scm (r-protgear): New variable.

Change-Id: Ic6d5cae65d4f76df4488ee2462071ba68b50c184
2024-01-21 11:08:13 +01:00
Liliana Marie Prikler 0afe456973
Revert "gnu: emacs-minimal: Update to 29.2."
This reverts commit b9bc400d85.

Fixes: Too many rebuilds <http://logs.guix.gnu.org/guix/2024-01-21.log#095235>
Reported-by: Efraim Flashner <efraim@flashner.co.il>
2024-01-21 10:09:55 +01:00
Liliana Marie Prikler ed3aa00249
gnu: gnome-shell-extension-paperwm: Use new package style.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm)[arguments]:
Convert to list of G-Expressions.
[native-inputs]: Drop labels.

Co-authored-by: Justin Veilleux <terramorpha@cock.li>
Co-authored-by: Vivien Kraus <vivien@planete-kraus.eu>
2024-01-21 09:48:21 +01:00
terramorpha 5fa60c3e81
gnu: gnome-shell-extension-paperwm: Update to 44.17.0.
* gnu/packages/gnome-xyz.scm (gnome-shell-extension-paperwm): Update to 44.17.0.

Change-Id: I3d9923ccfdb35b9952c24d8dd3d064c3cba7b8c2
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2024-01-21 09:32:29 +01:00
Vagrant Cascadian ccbbe3bd57
gnu: vcmi: Update to 1.4.2.
* gnu/packages/games.scm (vcmi): Update to 1.4.2.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2024-01-21 09:32:29 +01:00
Liliana Marie Prikler b9bc400d85
gnu: emacs-minimal: Update to 29.2.
* gnu/packages/emacs.scm (emacs-minimal): Update to 29.2.
2024-01-21 09:32:29 +01:00
Liliana Marie Prikler c7f937cfdd
gnu: emacs-minimal: Set upstream-name to “emacs”.
* gnu/packages/emacs.scm (emacs-minimal)[properties]: Add ‘upstream-name’.
2024-01-21 09:32:28 +01:00
Ricardo Wurmus 0facea431a
gnu: Add r-netgsa.
* gnu/packages/bioconductor.scm (r-netgsa): New variable.

Change-Id: I79b842854db80bbacdb8ff4c9fccfabdfc04d779
2024-01-21 08:33:56 +01:00
Ricardo Wurmus 815e378dee
gnu: Add r-glassofast.
* gnu/packages/cran.scm (r-glassofast): New variable.

Change-Id: I6ec7a1f8d4391d7d93f23789f448476b866e4687
2024-01-21 08:33:51 +01:00
Ricardo Wurmus 6648e34342
gnu: Add r-rcy3.
* gnu/packages/bioconductor.scm (r-rcy3): New variable.

Change-Id: Ia295e8a174f65c8378ae83bdc1dde2877a48ff45
2024-01-21 08:30:40 +01:00
Clément Lassieur 0ef8afe1e1
gnu: torbrowser: Add support for language localisation.
* gnu/packages/gnuzilla.scm (all-mozilla-locales): Export it.
* gnu/packages/tor.scm (%torbrowser-locales, translation-base-browser,
translation-tor-browser): New variables.
(torbrowser)[arguments]: In ‘setenv’ phase, set MOZ_CHROME_MULTILOCALE.  Add
‘copy-firefox-locales’, ‘copy-basebrowser-locales’, ‘copy-torbrowser-locales’
and ‘build-locales’ phases.

Change-Id: Ia5b28fa5d885f24140893dc270e57e83b0250c67
2024-01-21 01:17:51 +01:00
Ricardo Wurmus 8ca35ca44f
gnu: r-cytolib: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.1.
[source]: Do not unbundle included boost.
[arguments]: Remove.
[inputs]: Remove boost.

Change-Id: Ibe26b9df3f73e67fb9f53676a2c27a5aed714895
2024-01-21 00:17:45 +01:00
Troy Figiel e1d3be4113
gnu: python-pandera: Fix build.
* gnu/packages/python-science.scm (python-pandera): Fix build.
[source]: Delete tests/modin directory.
[native-inputs]: Remove python-modin.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-20 22:03:03 +00:00
Troy Figiel 7c540ed106
gnu: python-pandas-stubs: Update to 1.5.3.230321.
* gnu/packages/python-science.scm (python-pandas-stubs): Update to
1.5.3.230321.
[arguments]<#:test-flags>: Ignore tests that require a version of
python-pyarrow with ORC integration.
[native-inputs]: Add python-odfpy.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-20 22:02:49 +00:00
Kaelyn Takata c79ffe25e9
gnu: xorg-server-xwayland: Update to 23.2.4 [security fixes].
Fixes CVE-2023-6816, CVE-2024-0229, CVE-2024-21885, CVE-2024-21886,
CVE-2024-0409, and CVE-2024-0408.  See the X.Org security advisory
<https://lists.x.org/archives/xorg/2024-January/061525.html> for more
information.

* gnu/packages/xorg.scm (xorg-server-xwayland): Update to 23.2.4.

Change-Id: Ie6343d34652ba0caf00940775b5b227dd9bc05bc
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2024-01-20 16:52:09 -05:00
Kaelyn Takata ed6ff0ec7b
gnu: xorg-server: Update to 21.1.11 [security fixes].
Fixes CVE-2023-6816, CVE-2024-0229, CVE-2024-21885, CVE-2024-21886,
CVE-2024-0409, and CVE-2024-0408.  See the X.Org security advisory
<https://lists.x.org/archives/xorg/2024-January/061525.html> for more
information.

Copyright line updated as followup to commits
3080abba40 and
158502e40d.

* gnu/packages/xorg.scm (xorg-server): Update to 21.1.11.

Change-Id: I07cb273e2a504f94f8f26624d26ad79c6e92f109
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
2024-01-20 16:52:08 -05:00
Jack Hill 856b4a603a
gnu: gnutls: Update to 3.8.3 [security-fixes].
Fixes CVE-2024-0553 and CVE-2024-0567.

gnu/packages/tls.scm (gnutls-3.8.2): Rename to ...
(gnutls/fixed): ... this.  Update to 3.8.3.
(gnutls): Rename replacement to gnutls/fixed.

Change-Id: Ic44b3b0481ffd51cdc42a2d71a598f001b43c6f7
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Co-authored-by: John Kehayias <john.kehayias@protonmail.com>
2024-01-20 16:52:05 -05:00
Wamm K. D 782d69fb7f
gnu: Add python-manimpango.
* gnu/packages/python-xyz.scm (python-manimpango): New variable.

Co-authored-by: Troy Figiel <troy@troyfigiel.com>
Change-Id: I80effb2412e7c35ddf69c0d3ff6e2f052f282840
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-01-20 21:35:29 +00:00
Ricardo Wurmus 9072f27f5d
gnu: r-org-hs-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.18.0.

Change-Id: Iaba83a413858a95e81b6488a2f8cde648f0bdeed
2024-01-20 19:52:40 +01:00
Ricardo Wurmus d441454ba8
gnu: Add r-methylclockdata.
* gnu/packages/bioconductor.scm (r-methylclockdata): New variable.

Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2
2024-01-20 19:52:24 +01:00
Ricardo Wurmus 2b3a21c55f
gnu: Add r-experimenthubdata.
* gnu/packages/bioconductor.scm (r-experimenthubdata): New variable.

Change-Id: I5faf26f483898b162bc1f863a4aceb6f46c52c18
2024-01-20 19:52:05 +01:00
Ricardo Wurmus c4838027b4
gnu: Add r-jaspar2016.
* gnu/packages/bioconductor.scm (r-jaspar2016): New variable.

Change-Id: Ib2970791207b426c39bd0226e01107a35fec0bb2
2024-01-20 19:50:13 +01:00
Ricardo Wurmus 6f93502ced
gnu: Add r-genomicstate.
* gnu/packages/bioconductor.scm (r-genomicstate): New variable.

Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2
2024-01-20 19:45:26 +01:00
Ricardo Wurmus 4e706e6b18
gnu: Add r-shinymeta.
* gnu/packages/cran.scm (r-shinymeta): New variable.

Change-Id: I35e1c032283cdc010e4551c0d33f9d4202d9deee
2024-01-20 19:45:26 +01:00
Ricardo Wurmus c410d4e268
gnu: Add r-ensdb-hsapiens-v79.
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable.

Change-Id: I773615df66194ddb195f013f7000d175ac07d095
2024-01-20 19:45:26 +01:00
Maxim Cournoyer 9c367ee196
gnu: Add rust-rustc-demangle-capi-0.1.
* gnu/packages/crates-io.scm (rust-rustc-demangle-capi-0.1): New variable.

Change-Id: I98afb19ed4bdbcb9107a1ab30af49b055802b8b0

Reviewed-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: Ifeaefa5a377600320c3fd2a637aefaf29707e3b7
2024-01-19 22:57:27 -05:00
Maxim Cournoyer b509dedf83
gnu: guile-hall: Update to 0.4.1-1.7558ba9.
* gnu/packages/guile-xyz.scm (guile-hall): Update to 0.4.1-1.7558ba9.
[arguments] <modules>: Remove (ice-9 match) and (ice-9 ftw) modules.
Add (guix build guile-build-system).
<phases>: Use gexps.  Streamline hall-wrap-binaries phase.
[native-inputs]: Add guile-3.0 and gettext-minimal.
[propagated-inputs]: Delete field, moving guile-config to...
[inputs]: ... here.  Add bash-minimal and guile-lib.

Change-Id: Idef796dc3ba9ca3fa4df8114efe91af7c5cf7be0
2024-01-19 22:57:15 -05:00
Maxim Cournoyer c66a1a0f0f
gnu: reuse: Update to 3.0.1.
* gnu/packages/license.scm (reuse): Update to 3.0.1.
[arguments]: New field.

Change-Id: Ibbc5ae8cfa0e0e62b6c64bd90387022e88f9c933
2024-01-19 22:50:24 -05:00
Vinicius Monego dae418afd7
gnu: symengine: Update to 0.11.2.
* gnu/packages/algebra.scm (symengine): Update to 0.11.2.

Change-Id: I34c24dd8591e306a7740f0a3d51077aceec67fab
2024-01-19 22:01:31 -03:00