83fef82b7c
gnu: cubicle: Fix evaluation.
...
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
f167595ba1
Merge branch 'master' into core-updates
2017-08-06 00:23:20 -04:00
3d5d87a3ae
gnu: Add cubicle.
...
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
aa9780daf9
Merge branch 'master' into core-updates
2017-08-01 23:42:28 +02:00
313844d9dc
gnu: Add z3.
...
* gnu/packages/maths.scm (z3): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-29 23:03:47 +02:00
e0b9e377f1
Merge branch 'master' into core-updates
2017-07-28 00:34:13 +02:00
1cae188e61
gnu: glpk: Update to 4.63.
...
* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-26 10:15:54 +03:00
0093b1262b
gnu: maxima: Ensure binutils are available at runtime.
...
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax.
Modify 'post-install' phase.
2017-07-25 07:58:55 -04:00
6b2eafaaa8
Revert "gnu: maxima: Ensure gcc is available at runtime."
...
This reverts commit f2fa86cc825ea8dbf0c9
2017-07-25 07:58:46 -04:00
6c1a317e29
Merge branch 'master' into core-updates
2017-07-23 03:42:12 -04:00
7c0d4c3a6b
gnu: lapack: Fix hash of release 3.7.1
...
Apparently the release was modified (cleaned-up) in-place. An issue was opened
at https://github.com/Reference-LAPACK/lapack-release/issues/4 .
* gnu/packages/maths.scm (lapack): Fix sha256 hash.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-20 00:54:51 +02:00
c8eb2b8c60
Merge branch 'master' into core-updates
2017-07-10 14:37:53 -04:00
5143517c99
gnu: wxmaxima: Update to 17.05.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
2017-07-08 17:05:55 -04:00
f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime.
...
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
2017-07-07 20:47:28 -04:00
3a4d5df2b0
gnu: itpp: Use texlive-tiny and ghostscript.
...
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with
texlive-tiny; add ghostscript.
2017-06-30 13:57:42 +02:00
612a387fe7
gnu: gnuplot: Use texlive-tiny.
...
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
2017-06-30 13:57:41 +02:00
1024c8119c
Merge branch 'master' into core-updates
2017-06-29 18:02:17 -04:00
3ab869b63f
gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64.
...
This fixes a regression introduced in
ef39a17717
2017-06-29 15:21:17 +02:00
26599d692c
gnu: scotch: Build in 64-bit mode on 64-bit machines.
...
* gnu/packages/maths.scm (scotch)[arguments] <configure>: Add
"INTSIZE64" CPP flag.
2017-06-26 18:16:11 +02:00
11f0c4e871
gnu: lapack: Build with LAPACKE_WITH_TMG=ON.
...
* gnu/packages/maths.scm (lapack)[arguments]: Pass
"-DLAPACKE_WITH_TMG=ON".
2017-06-26 18:16:11 +02:00
ef39a17717
gnu: lapack: Update to 3.7.1.
...
* gnu/packages/maths.scm (lapack): Update to 3.7.1.
2017-06-26 18:16:11 +02:00
ed068b960e
Merge branch 'master' into core-updates
2017-06-26 00:00:58 -04:00
2da6306427
gnu: hdf5: Update to 1.8.19.
...
* gnu/packages/maths.scm (hdf5): Update to 1.8.19.
[source]: Update uri.
2017-06-25 23:11:16 +02:00
f885fc0512
gnu: gsl: Update to 2.4.
...
* gnu/packages/maths.scm (gsl): Update to 2.4.
[arguments]: Remove #:parallel-tests?.
2017-06-21 23:15:56 +05:30
148585c240
gnu: Move contents of zip module into compression module.
...
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to...
* gnu/packages/compression.scm: ...here.
* gnu/packages/zip.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file.
* po/packages/POTFILES.in: Unregister deleted file.
* gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression,
docbook, documentation, fonts, fpga, game-development, games, gl, gnome,
gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice,
markup, maths, mc, monitoring, music, php, pretty-print, python, scheme,
smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml,
zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm:
Adapt module import.
2017-06-20 18:10:35 +05:30
9815739e9b
Merge branch 'master' into core-updates
2017-06-20 00:25:59 -04:00
299b05254f
gnu: glpk: Update to 4.62.
...
* gnu/packages/maths.scm (glpk): Update to 4.62.
2017-06-19 22:07:15 +03:00
c67d587f94
Merge branch 'master' into core-updates
...
This merge commit includes a fix for CVE-2017-6512 in Perl 5.26.0.
2017-06-07 12:11:55 -04:00
89b8df9765
gnu: maxima: Update to 5.40.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.40.0.
2017-06-06 16:58:23 -04:00
d1a914082b
Merge branch 'master' into core-updates
2017-05-24 12:05:47 +02:00
5e54f4adda
gnu: flex-2.6.1: Remove variable.
...
* gnu/packages/flex.scm (flex-2.6.1): Remove variable.
* gnu/packages/bootloaders.scm (grub, dtc): Use flex instead of flex-2.6.1.
* gnu/packages/embedded.scm (propeller-binutils, binutils-vc4): Likewise.
* gnu/packages/maths.scm (scotch): Likewise.
* gnu/packages/wine.scm (wine): Likewise.
2017-05-15 17:07:12 -04:00
7adaab9fe7
gnu: Add ocaml4.01-gsl.
...
* gnu/packages/maths.scm (ocaml4.01-gsl): New variable.
2017-05-10 22:13:54 +02:00
300200b637
gnu: Add netcdf-fortran.
...
* gnu/packages/maths.scm (netcdf-fortran): New variable.
2017-04-30 11:50:50 +02:00
7d873e0c26
gnu: gnuplot: Update to 5.0.6.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
2017-04-22 13:33:09 -04:00
d1e4ad1b02
gnu: Fix typos in descriptions.
...
* gnu/packages/admin.scm (di)[description]: Likewise.
* gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise.
* gnu/packages/datastructures.scm (sparsehash)[description]: Likewise.
* gnu/packages/dns.scm (knot)[description]: Likewise.
* gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]:
Likewise.
* gnu/packages/gnome.scm (libpeas)[description]: Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise.
* gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo.
* gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[description]: Likewise.
* gnu/packages/mail.scm (mlmmj)[description]: Likewise.
* gnu/packages/maths.scm (vc)[description]: Likewise.
* gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise.
* gnu/packages/networking.scm (nload)[description]: Likewise.
* gnu/packages/python.scm (python-execnet)[description]: Likewise.
* gnu/packages/terminals.scm (tilda)[description]: Likewise.
* gnu/packages/python.scm (python-execnet, python-tables)
(python2-coverage-test-runner, python2-rope)[description]: Likewise.
2017-04-17 02:04:08 +02:00
181170c6ee
gnu: octave: Build with gl2ps support.
...
* gnu/packages/maths.scm (octave)[inputs]: Add gl2ps.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-08 15:24:37 +02:00
6b6aca9b36
gnu: flann: Move .mex file to a separate "octave" output.
...
That way the closure of flann:out is down from 1 GiB
to 290 MiB.
* gnu/packages/maths.scm (flann)[outputs]: New field.
[arguments]: Add 'set-octave-directory' phase.
2017-04-07 00:17:16 +02:00
fe418cc5b2
gnu: armadillo: Change license to ASL 2.0.
...
Armadillo versions 7.800 and onwards are licensed under the Apache License
2.0.
* gnu/packages/maths.scm (armadillo)[license]: Change to ASL 2.0.
2017-04-06 15:42:18 +02:00
498d2553ed
gnu: Remove armadillo-for-rcpparmadillo.
...
This package is no longer useful, because upstream does not keep the tarballs
of older releases. We use the bundled armadillo sources in the
r-rccparmadillo package instead.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
2017-04-06 14:39:22 +02:00
133cba8cb5
gnu: armadillo: Update to 7.800.2.
...
* gnu/packages/maths.scm (armadillo): Update to 7.800.2.
2017-04-06 14:39:22 +02:00
2fe41e0fad
gnu: r-pracma: Update to 2.0.4.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-04-06 14:39:18 +02:00
84157bb8bf
Merge branch 'master' into core-updates
...
Most conflicts are from 6fd52309b8
2017-03-30 22:59:53 +02:00
6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.
...
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-30 01:30:16 +02:00
6f76606984
gnu: gsl: Disable tests on aarch64-linux.
...
* gnu/packages/maths.scm (gsl)[arguments]: Do not run the test suite on
aarch64-linux.
[home-page]: Use https.
2017-03-28 09:34:33 +03:00
c17383f400
Merge branch 'master' into core-updates
2017-03-27 21:19:38 -04:00
6e64766a86
gnu: gnuplot: Enable tikz backend.
...
* gnu/packages/maths.scm (gnuplot)[inputs]: Add lua.
2017-03-27 15:58:50 +02:00
d5ceeb5a2d
gnu: scotch: Build with flex-2.6.1.
...
* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not
flex.
2017-03-23 07:32:31 +02:00
83a3464793
gnu: openblas: Add support for aarch64.
...
* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as
substitutable, build for target ARMv8.
2017-03-21 22:03:05 +02:00
6d5f63b690
gnu: Add maxflow.
...
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18 10:31:54 +01:00
a53d6719bc
gnu: Add itpp.
...
* gnu/packages/maths.scm (itpp): New variable.
2017-03-18 10:31:50 +01:00
ba1be533ad
gnu: Add ocaml-gsl.
...
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-17 21:43:25 +10:00
cf8d068775
gnu: units: Update to 2.14.
...
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
9f91340166
gnu: octave: Build with curl and graphicsmagick.
...
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:09 -05:00
479c4273e6
gnu: Add jacal.
...
* gnu/packages/maths.scm (jacal): New variable.
* gnu/packages/patches/jacal-fix-texinfo.patch: New file.
2017-03-02 18:17:26 +01:00
e9d60ebadb
gnu: octave: Update to 4.2.1.
...
* gnu/packages/maths.scm (octave): Update to 4.2.1.
2017-03-01 11:33:08 +02:00
a995251d68
gnu: wxmaxima: Downgrade to 16.04.2.
...
* gnu/packages/maths.scm (wxmaxima): Do it.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-28 11:22:13 -05:00
cbfbcb2105
gnu: coda: Update to 2.18.
...
* gnu/packages/python.scm (coda): Update to 2.18.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-02-27 14:55:25 +01:00
1f45f18abe
installer: Aris: update synopis and description.
...
* gnu/packages/maths.scm (aris): Use the synopsis and description from the
web page instead of the README file.
2017-02-17 18:52:24 +01:00
193abc8232
gnu: Add aris.
...
* gnu/packages/maths.scm(aris): New variable.
2017-02-17 18:33:24 +01:00
29da15738c
gnu: wxmaxima: Update to 16.12.2.
...
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.2.
2017-02-10 11:02:10 -05:00
4554813936
gnu: gmsh: Propagate opencascade-oce.
...
* gnu/packages/maths.scm (gmsh)[propagated-inputs]: Add opencascade-oce.
[arguments]: Remove #:phases parameter for component8_in_a_box test
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-02-09 19:19:06 +01:00
182dde82ed
gnu: cddlib: Fix source URI.
...
* gnu/packages/maths.scm (cddlib)[source]: Update source URI.
2017-02-04 15:26:26 +10:00
c000b6b10f
gnu: reducelcs: Fix license.
...
* gnu/packages/maths.scm (reducelcs)[license]: Change to GPL3+.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-01 19:51:36 -05:00
8a4d14fa71
gnu: gmsh: Update to 2.16.0
...
* gnu/packages/maths.scm (gmsh): Update to 2.16.0
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-31 17:55:50 +01:00
54052a54c1
gnu: Add reducelcs.
...
* gnu/packages/maths.scm (reducelcs): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-01-30 07:46:28 -05:00
5d4bd4cce1
gnu: Add opencascade-oce.
...
* gnu/packages/maths.scm (opencascade-oce): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-01-30 10:52:45 +01:00
82110ef658
gnu: glpk: Update to 4.61.
...
* gnu/packages/maths.scm (glpk): Update to 4.61.
[home-page]: Use HTTPS.
2017-01-23 18:54:27 +01:00
7bbf2e39f7
gnu: hdf4: Update to 4.2.12.
...
* gnu/packages/maths.scm (hdf4): Update to 4.2.12.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-09 15:55:57 +01:00
a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
2016-12-29 21:49:12 +01:00
b1c1f4d012
gnu: armadillo: Update to 7.600.2.
...
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
2016-12-29 21:49:12 +01:00
db82557013
gnu: netcdf: Enable HDF4 support.
...
* gnu/packages/maths.scm (netcdf)[inputs]: Add hdf4-alt and libjpeg.
[arguments]: Add "--enable-hdf4" configure flag.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-24 14:41:50 +01:00
5f80054053
gnu: gnuplot: Update to 5.0.5.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.5.
2016-12-18 23:27:43 -05:00
5a2604bfb6
gnu: wxmaxima: Update to 16.12.0.
...
* gnu/packages/maths.scm (wxmaxima): Update to 16.12.0.
2016-12-18 14:05:40 -05:00
4a652c78d4
gnu: maxima: Update to 5.39.0.
...
* gnu/packages/maths.scm (maxima): Update to 5.39.0.
2016-12-18 12:57:09 -05:00
bea3cf4b90
gnu: gsl: Update to 2.3.
...
* gnu/packages/maths.scm (gsl): Update to 2.3.
2016-12-12 22:08:45 +01:00
f81c6a4932
gnu: gmsh: Update to 2.15.0.
...
* gnu/packages/maths.scm (gmsh): Update to 2.15.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-12-09 19:14:21 +01:00
a4b0bfb195
gnu: netcdf: Upgrade to 4.4.1.1.
...
* gnu/packages/maths.scm (netcdf, netcdf-parallel-openmpi): Upgrade to
4.4.1.1.
[source]: Adjust patch name, add netcdf-tst_h_par.patch
* gnu/packages/patches/netcdf-config.date.patch: Rename to...
* gnu/packages/patches/netcdf-date-time.patch: ...this. Adjust for
latest source.
* gnu/packages/patches/netcdf-tst_h_par.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Adjust patches.
2016-12-01 23:50:09 -06:00
dcd9d1637a
gnu: hdf5: Update to 1.8.18 [fixes CVE-2016-{4330,4331,4332,4333}].
...
* gnu/packages/maths.scm (hdf5): Update to 1.8.18.
[source]: Add alternate URL.
2016-11-30 11:16:18 -05:00
62126576fc
gnu: hdf5: Build the C++ interface.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
2016-11-24 21:43:47 +01:00
daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>.
...
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-21 14:39:54 -05:00
f5a077b10f
gnu: octave: Update to 4.2.0.
...
* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
2016-11-15 15:21:15 +02:00
2cab1dd58b
Merge branch 'core-updates'
2016-11-13 00:34:16 +01:00
1c79e0861a
gnu: gmsh: Update to 2.14.1
...
* gnu/packages/maths.scm (gmsh): Update to 2.14.1.
[source]: Use new uri.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-10 18:57:57 +02:00
8b6ad165d1
Merge branch 'master' into core-updates
2016-11-06 03:29:06 -05:00
ccbc575824
gnu: maxima: Update to 5.38.1.
...
* gnu/packages/maths.scm (maxima): Update to 5.38.1.
2016-11-03 16:14:05 -04:00
062c7e43ed
Merge branch 'master' into core-updates
2016-10-29 21:44:44 -04:00
fba78d18c2
gnu: mumps: Upgrade to 5.0.2.
...
* gnu/packages/maths.scm (mumps): Upgrade to 5.0.2.
[arguments]: Properly return boolean from install phase.
2016-10-28 15:53:32 -05:00
02c73adcdf
Merge branch 'master' into core-updates
2016-10-26 19:00:06 -04:00
062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
2016-10-26 16:23:25 +02:00
7397cd9e3f
gnu: armadillo: Update to 7.500.0.
...
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
2016-10-26 16:23:25 +02:00
4b12fe5cab
gnu: coda: Remove bundled libraries.
...
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-25 14:56:37 +02:00
d91025e3d0
gnu: Add coda.
...
* gnu/packages/maths.scm (coda): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:14:52 +02:00
d3c4f3bb00
gnu: Add hdf-eos2.
...
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-24 23:05:20 +02:00
d2478b4cdd
Merge branch 'master' into core-updates
2016-10-19 10:54:36 -04:00
15ca49b220
gnu: hdf4: Really fix non-x86 architectures.
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This is a follow-up to commit 60da9fb110
2016-10-18 21:15:43 +02:00
061d7f3bd2
Merge branch 'master' into core-updates
2016-10-13 05:53:07 -04:00
becbbefc9b
gnu: Add hdf4
...
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-12 23:35:43 +02:00
abcf4858cd
Merge branch 'master' into core-updates
2016-10-12 09:28:14 -04:00
0f43f8354c
gnu: Add hdf-eos5.
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* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-10-06 18:14:45 +02:00
b19c7989b7
Merge branch 'master' into core-updates
2016-10-05 19:15:25 -04:00
517318adf0
gnu: Add Vc.
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* gnu/packages/maths.scm (vc): New variable.
2016-10-05 12:49:41 -04:00
ab2cc5cde1
gnu: gsl: Disable failing tests on i686.
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* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
2016-10-05 15:11:08 +02:00
8c82e1c9d3
gnu: gsl: Update to 2.2.1.
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* gnu/packages/maths.scm (gsl): Update to 2.2.1.
2016-10-04 16:37:59 +02:00
0f7cd95b81
gnu: gctp: 'license' field now has a <license> value.
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* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
2016-10-03 23:20:23 +02:00
79355ae3e8
Merge branch 'master' into core-updates
2016-09-30 12:05:27 +02:00
b94a6ca074
gnu: Add and use gettext-minimal.
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* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this. Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
2016-09-28 17:54:50 +03:00
32f70e1f86
gnu: Add gctp.
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* gnu/packages/maths.scm (gctp): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-27 13:37:46 -04:00
538c0e3b69
gnu: openlibm: Remove support for mips.
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* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
2016-09-21 22:36:52 +03:00
883d0a7d25
gnu: openblas: Update to 0.2.19.
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* gnu/packages/maths.scm (openblas): Update to 0.2.19.
2016-09-13 00:50:13 -04:00
5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0.
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* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
2016-09-12 17:44:47 +02:00
ccd9b1511e
gnu: r-pracma: Update to 1.9.5.
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* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
2016-09-12 17:44:40 +02:00
2d047896f9
gnu: Add r-quadprog.
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* gnu/packages/maths.scm (r-quadprog): New variable.
2016-09-12 17:44:40 +02:00
bb76ef9d8b
Revert "gnu: gsl: Update to 2.2."
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This reverts commit b16b16e6c2
2016-09-01 20:17:01 -04:00
b16b16e6c2
gnu: gsl: Update to 2.2.
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* gnu/packages/maths.scm (gsl): Update to 2.2.
2016-08-30 08:39:09 +03:00
b3d2be945d
Merge remote-tracking branch 'origin/master' into core-updates
2016-08-29 23:46:33 +03:00
aa127019b5
gnu: octave: Update to 4.0.3.
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* gnu/packages/maths.scm (octave): Update to 4.0.3.
[inputs]: Remove unnecessary curl, cyrus-sasl and openssl dependencies.
2016-08-27 08:04:21 +02:00
3c98ac0240
gnu: atlas: Update to 3.10.3.
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* gnu/packages/maths.scm (atlas): Update to 3.10.3.
2016-08-22 10:56:03 +03:00
e5b4b96b8c
gnu: atlas: Use 'modify-phases'.
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* gnu/packages/maths.scm (atlas)[arguments]: Use 'modify-phases'.
2016-08-19 17:41:09 +03:00
e04ae27bcf
gnu: openblas: Update to 0.2.18.
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* gnu/packages/maths.scm (openblas): Update to 0.2.18.
2016-08-14 17:35:32 +02:00
536fc5f8cd
Merge branch 'core-updates'
2016-08-04 08:17:05 -04:00
0832787e5c
Revert "Merge branch 'core-updates'"
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This reverts commit 455859a50f
2016-08-04 08:16:38 -04:00
b7194849ad
Rename references to (gnu packages tcsh).
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* gnu/packages/algebra.scm, gnu/packages/boost.scm,
gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm:
Change broken references to module (gnu packages tcsh) to (gnu packages
shells).
2016-08-03 16:22:31 +02:00
455859a50f
Merge branch 'core-updates'
2016-08-01 23:30:52 +02:00
3d337bbc39
Merge branch 'master' into core-updates
2016-07-31 23:27:03 -04:00
5e74529271
gnu: units: Update to 2.13.
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* gnu/packages/maths.scm (units): Update to 2.13.
2016-08-01 01:11:57 +02:00
101e847294
gnu: dealii: Update to 8.4.1.
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* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
2016-07-31 15:22:41 +02:00
0bab3af078
Merge branch 'master' into core-updates
2016-07-29 14:18:07 -04:00
a3947cb1b8
gnu: Sync GNU descriptions with upstream.
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From 'guix lint -c gnu-description'.
* gnu/packages/gnunet.scm (gnunet): Adjust description.
* gnu/packages/marst.scm (marst): Likewise.
* gnu/packages/maths.scm (c-graph): Likewise.
* gnu/packages/networking.scm (macchanger): Likewise.
2016-07-29 10:13:12 +02:00
5dbfbef729
gnu: lpsolve: Fix compilation issue.
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Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html >.
* gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
2016-07-26 00:43:52 +02:00
6689d09457
gnu: lpsolve: Fail as early as possible.
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* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check
the return value of 'system*' and honor it.
2016-07-26 00:43:52 +02:00
430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4.
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* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
2016-07-22 18:24:22 +03:00
d7cff656df
gnu: muparser: Update source URL.
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* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
2016-07-21 18:25:20 -04:00
de67e92288
gnu: Update URLs for sourceforge.net.
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* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
2016-07-21 18:09:40 -04:00
a9c64810cd
gnu: gnuplot: Update to 5.0.4.
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* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
2016-07-21 13:56:51 +03:00
2908087013
gnu: superlu-dist: Remove non-free source.
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* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
2016-07-20 21:16:25 -05:00
8787c555d9
gnu: slepc: Update to 3.7.1.
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* gnu/packages/maths.scm (slepc): Update to 3.7.1.
2016-07-20 21:16:25 -05:00
fafd623e49
gnu: petsc: Update to 3.7.2.
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* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
2016-07-20 21:16:24 -05:00
b730b43770
gnu: petsc: Make header generation reproducible.
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* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
petscmachineinfo.h header.
2016-07-20 21:16:24 -05:00
64dcc28963
gnu: petsc: Use modify-phases.
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* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
2016-07-20 21:16:24 -05:00
995a09e055
gnu: superlu: Update to 5.2.1.
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* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
2016-07-20 18:31:16 -05:00
d721c83a63
gnu: Add libhilbert.
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* gnu/packages/maths.scm (libhilbert): New variable.
2016-07-20 18:31:16 -05:00
8e9ba611cb
gnu: atlas: Use @example in description.
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* gnu/packages/maths.scm (atlas)[description]: Use "@example".
2016-07-19 23:03:30 +02:00
d97c429a34
gnu: atlas: Use cpupower in description.
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* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-19 23:03:30 +02:00
7b569b01d3
gnu: lapack: Build the LAPACKE library.
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* gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
2016-07-17 11:09:31 +02:00
49f54a7454
gnu: openspecfun: Update to 0.5.2.
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* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
2016-07-03 10:14:16 +03:00
26f6e565a9
gnu: openlibm: Update to 0.5.1.
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* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
2016-07-03 10:07:17 +03:00
468e0b18d1
gnu: ceres-solver: Propagate GLOG.
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* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here. New field.
2016-06-29 16:08:46 +02:00
Marius Bakke
Mark H Weaver
Julien Lepiller
Ricardo Wurmus
Efraim Flashner
Thomas Danckaert
Theodoros Foradis
Kei Kebreau
Leo Famulari
Maxim Cournoyer
Ludovic Courtès
Arun Isaac
Ben Woodcroft
Tobias Geerinckx-Rice
Ludovic Courtès
Danny Milosavljevic
John Darrington
Federico Beffa
Paul Garlick
ng0
Thomas Danckaert
Eric Bavier
Petter
Andreas Enge
Alex Kost