8e08912fcd
gnu: r-pcamethods: Update to 1.92.0.
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* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.92.0.
2023-04-29 20:27:57 +02:00
fdf3453dad
gnu: r-pcaexplorer: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 2.26.0.
2023-04-29 20:27:57 +02:00
e408cd70e8
gnu: r-oscope: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-oscope): Update to 1.30.0.
2023-04-29 20:27:57 +02:00
18d4032d2a
gnu: r-organismdbi: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.42.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:57 +02:00
3c31e017e2
gnu: r-organism-dplyr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.28.0.
2023-04-29 20:27:57 +02:00
394c951ba2
gnu: r-mzr: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-mzr): Update to 2.34.0.
2023-04-29 20:27:57 +02:00
3e05ea0edb
gnu: r-mzid: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-mzid): Update to 1.38.0.
2023-04-29 20:27:57 +02:00
6d09227e1f
gnu: r-msnid: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-msnid): Update to 1.34.0.
2023-04-29 20:27:57 +02:00
6bbb3bedb1
gnu: r-msnbase: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.26.0.
2023-04-29 20:27:57 +02:00
5c6355ca35
gnu: r-msa: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-msa): Update to 1.32.0.
2023-04-29 20:27:57 +02:00
ba6ed3ff40
gnu: r-mutationalpatterns: Update to 3.10.0.
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* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.10.0.
2023-04-29 20:27:57 +02:00
37e95f3c9c
gnu: r-muscat: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-muscat): Update to 1.14.0.
2023-04-29 20:27:57 +02:00
da92987a4b
gnu: r-mmuphin: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.14.0.
[propagated-inputs]: Remove r-biocstyle.
2023-04-29 20:27:57 +02:00
2ebeeeb438
gnu: r-methylkit: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.26.0.
2023-04-29 20:27:57 +02:00
15efeebe53
gnu: r-metaneighbor: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-metaneighbor): Update to 1.20.0.
2023-04-29 20:27:57 +02:00
0ee6b4203d
gnu: r-metagenomeseq: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.42.0.
2023-04-29 20:27:57 +02:00
380e27f153
gnu: r-maser: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-maser): Update to 1.18.0.
2023-04-29 20:27:57 +02:00
3c8d7bd3c6
gnu: r-manor: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-manor): Update to 1.72.0.
2023-04-29 20:27:57 +02:00
6e5c2c48df
gnu: r-makecdfenv: Update to 1.76.0.
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* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.76.0.
2023-04-29 20:27:56 +02:00
4d1208e654
gnu: r-made4: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-made4): Update to 1.74.0.
2023-04-29 20:27:56 +02:00
343036f151
gnu: r-maaslin2: Update to 1.13.0.
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* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.13.0.
[propagated-inputs]: Remove r-mumin and r-rmarkdown.
[arguments]: Remove.
2023-04-29 20:27:56 +02:00
d1da543257
gnu: r-limma: Update to 3.56.0.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.0.
2023-04-29 20:27:56 +02:00
b962e908a0
gnu: r-keggrest: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.40.0.
2023-04-29 20:27:56 +02:00
2c32ed3955
gnu: r-interactivedisplaybase: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.38.0.
2023-04-29 20:27:56 +02:00
ab9cdb4082
gnu: r-impute: Update to 1.74.0.
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* gnu/packages/bioconductor.scm (r-impute): Update to 1.74.0.
2023-04-29 20:27:56 +02:00
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gnu: r-rhtslib: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-rhtslib): Update to 2.2.0.
2023-04-29 20:27:56 +02:00
c3882920fd
gnu: r-hpar: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-hpar): Update to 1.42.0.
[propagated-inputs]: Add r-experimenthub.
2023-04-29 20:27:56 +02:00
fdc4c55da2
gnu: r-harshlight: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.72.0.
2023-04-29 20:27:56 +02:00
f7a3988fc7
gnu: r-gseabase: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.62.0.
2023-04-29 20:27:56 +02:00
57e4aab4ee
gnu: r-gostats: Update to 2.66.0.
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* gnu/packages/bioconductor.scm (r-gostats): Update to 2.66.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:56 +02:00
96613abcc5
gnu: r-globaltest: Update to 5.54.0.
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* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.54.0.
2023-04-29 20:27:56 +02:00
5cb6453b43
gnu: r-glad: Update to 2.64.0.
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* gnu/packages/bioconductor.scm (r-glad): Update to 2.64.0.
2023-04-29 20:27:56 +02:00
a6f4e6e7fb
gnu: r-genomicranges: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.52.0.
2023-04-29 20:27:56 +02:00
7c75371b19
gnu: r-genomicfiles: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.36.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:56 +02:00
25ffc3d9ef
gnu: r-genomicfeatures: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.0.
2023-04-29 20:27:56 +02:00
8e72841e03
gnu: r-genomicalignments: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.36.0.
2023-04-29 20:27:56 +02:00
d87887a2ba
gnu: r-genomeinfodb: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.0.
2023-04-29 20:27:56 +02:00
dac6f08730
gnu: r-genomation: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-genomation): Update to 1.32.0.
2023-04-29 20:27:56 +02:00
ff563c9a60
gnu: r-geneoverlap: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.36.0.
2023-04-29 20:27:56 +02:00
d7a10c3d52
gnu: r-genefilter: Update to 1.82.0.
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* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.82.0.
[propagated-inputs]: Remove r-biocgenerics; add r-matrixgenerics.
2023-04-29 20:27:56 +02:00
70c3d4ac37
gnu: r-gage: Update to 2.50.0.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.50.0.
2023-04-29 20:27:56 +02:00
476042884c
gnu: r-fastseg: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.46.0.
2023-04-29 20:27:56 +02:00
3ce5803cac
gnu: r-ensembldb: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.24.0.
2023-04-29 20:27:56 +02:00
f9b6a2ad85
gnu: r-enmix: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-enmix): Update to 1.36.0.
2023-04-29 20:27:56 +02:00
cbe7726d68
gnu: r-edger: Update to 3.42.0.
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* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.0.
2023-04-29 20:27:56 +02:00
2a1f12e3d1
gnu: r-edaseq: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.34.0.
2023-04-29 20:27:56 +02:00
59cecee237
gnu: r-dittoseq: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.12.0.
2023-04-29 20:27:56 +02:00
70784f1dcf
gnu: r-dirichletmultinomial: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.42.0.
2023-04-29 20:27:55 +02:00
876c2dcb74
gnu: r-diffcyt: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.20.0.
2023-04-29 20:27:55 +02:00
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gnu: r-dexseq: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.46.0.
2023-04-29 20:27:55 +02:00
dc78185fc7
gnu: r-deseq2: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.0.
[propagated-inputs]: Remove r-geneplotter.
[native-inputs]: Add r-rmarkdown.
2023-04-29 20:27:55 +02:00
176c45cb21
gnu: r-complexheatmap: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.16.0.
2023-04-29 20:27:55 +02:00
f86ea9868a
gnu: r-chipseq: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.50.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:55 +02:00
219901a7b2
gnu: r-chipseeker: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.36.0.
[propagated-inputs]: Remove r-ggvenndiagram and r-rcolorbrewer; add r-aplot, r-tibble,
and r-yulab-utils.
2023-04-29 20:27:55 +02:00
6c700d8b3a
gnu: r-champ: Update to 2.30.0.
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* gnu/packages/bioconductor.scm (r-champ): Update to 2.30.0.
2023-04-29 20:27:55 +02:00
7b4443f365
gnu: r-category: Update to 2.66.0.
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* gnu/packages/bioconductor.scm (r-category): Update to 2.66.0.
2023-04-29 20:27:55 +02:00
5d526f71c8
gnu: r-bsgenome: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.68.0.
2023-04-29 20:27:55 +02:00
9201a7728b
gnu: r-biovizbase: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.48.0.
2023-04-29 20:27:55 +02:00
bbd90f85b9
gnu: r-biostrings: Update to 2.68.0.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.0.
2023-04-29 20:27:55 +02:00
c9d5ec9e66
gnu: r-biocparallel: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.0.
2023-04-29 20:27:55 +02:00
d0199e0c5c
gnu: r-biomart: Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.0.
2023-04-29 20:27:55 +02:00
766fb8a21c
gnu: r-biobase: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-biobase): Update to 2.60.0.
[native-inputs]: Add r-knitr.
2023-04-29 20:27:55 +02:00
b8c4b8b44f
gnu: r-bamsignals: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.32.0.
2023-04-29 20:27:55 +02:00
968878ef27
gnu: r-aroma-light: Update to 3.30.0.
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* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.30.0.
2023-04-29 20:27:55 +02:00
83b381a95b
gnu: r-annotationhub: Update to 3.8.0.
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* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.8.0.
2023-04-29 20:27:55 +02:00
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gnu: r-annotationforge: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.0.
2023-04-29 20:27:55 +02:00
aa97ff9c34
gnu: r-annotationfilter: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.24.0.
2023-04-29 20:27:55 +02:00
46ff186f73
gnu: r-annotationdbi: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.0.
2023-04-29 20:27:55 +02:00
d9d1b77c84
gnu: r-annotate: Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-annotate): Update to 1.78.0.
2023-04-29 20:27:55 +02:00
4f2c3411ec
gnu: r-affxparser: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.72.0.
2023-04-29 20:27:55 +02:00
1b4dd53a4f
gnu: r-affyio: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-affyio): Update to 1.70.0.
2023-04-29 20:27:55 +02:00
5d8d8c2256
gnu: r-affycoretools: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.72.0.
2023-04-29 20:27:55 +02:00
a7485d9850
gnu: r-affycontam: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.58.0.
2023-04-29 20:27:55 +02:00
b121b78bda
gnu: r-affycomp: Update to 1.76.0.
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* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.76.0.
2023-04-29 20:27:55 +02:00
6a19dd1e21
gnu: r-affy: Update to 1.78.0.
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* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.0.
2023-04-29 20:27:55 +02:00
21b305edbe
gnu: r-italics: Update to 2.60.0.
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* gnu/packages/bioconductor.scm (r-italics): Update to 2.60.0.
2023-04-29 20:27:55 +02:00
669d0d17da
gnu: r-isoformswitchanalyzer: Update to 1.21.0.
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* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.21.0.
2023-04-29 20:27:54 +02:00
a0846151b3
gnu: r-iranges: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.0.
2023-04-29 20:27:54 +02:00
116bc67509
gnu: r-infercnv: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.16.0.
2023-04-29 20:27:54 +02:00
09260401c4
gnu: r-ideoviz: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.36.0.
2023-04-29 20:27:54 +02:00
e057271297
gnu: r-bluster: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bluster): Update to 1.10.0.
2023-04-29 20:27:54 +02:00
0ef0e70d81
gnu: r-dss: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-dss): Update to 2.48.0.
2023-04-29 20:27:54 +02:00
72bfb25766
gnu: r-drimseq: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.28.0.
2023-04-29 20:27:54 +02:00
c901f7c4f3
gnu: r-dmrcate: Update to 2.14.0.
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* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.14.0.
2023-04-29 20:27:54 +02:00
b23aac21d5
gnu: r-derfinderhelper: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.34.0.
2023-04-29 20:27:54 +02:00
b7b1423882
gnu: r-delayedarray: Update to 0.25.0.
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* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.25.0.
2023-04-29 20:27:54 +02:00
c179c05e35
gnu: r-deepsnv: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.46.0.
2023-04-29 20:27:54 +02:00
57bb01b808
gnu: r-decoupler: Update to 2.6.0.
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* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.6.0.
2023-04-29 20:27:54 +02:00
28b2d8a1e3
gnu: r-deconvr: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.6.0.
2023-04-29 20:27:54 +02:00
228c0fae2b
gnu: r-decontam: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-decontam): Update to 1.20.0.
2023-04-29 20:27:54 +02:00
37a7539db3
gnu: r-deconrnaseq: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.42.0.
2023-04-29 20:27:54 +02:00
8ccd86a17b
gnu: r-decomptumor2sig: Update to 2.16.0.
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* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.16.0.
2023-04-29 20:27:54 +02:00
c9794ffe59
gnu: r-decipher: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-decipher): Update to 2.28.0.
2023-04-29 20:27:54 +02:00
52e738d346
gnu: r-debcam: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-debcam): Update to 1.18.0.
[source]: Delete bundled Java archives.
[arguments]: Add phase 'build-jar; add phase 'strip-jar-timestamps; do a fake
installation and disable tests due to a regression in R 4.3.0.
[inputs]: Replace openjdk with icedtea:jdk; add java-pj.
[native-inputs]: Add zip.
2023-04-29 20:27:17 +02:00
2bf6f659c4
gnu: Add java-pj.
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* gnu/packages/java.scm (java-pj): New variable.
2023-04-29 20:09:33 +02:00
4837210129
gnu: r-dearseq: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.12.0.
2023-04-29 20:09:33 +02:00
8f93a53a4c
gnu: r-damefinder: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.12.0.
2023-04-29 20:09:33 +02:00
01ba2a24d2
gnu: r-dama: Update to 1.72.0.
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* gnu/packages/bioconductor.scm (r-dama): Update to 1.72.0.
2023-04-29 20:09:33 +02:00
9b305554a3
gnu: r-cummerbund: Update to 2.42.0.
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* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.42.0.
2023-04-29 20:09:33 +02:00
6233b26d1d
gnu: r-coverageview: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.38.0.
2023-04-29 20:09:33 +02:00
Ricardo Wurmus