43bf50ecae
gnu: r-ggcyto: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09 12:12:47 +01:00
b856a48768
gnu: r-scdd: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09 12:12:47 +01:00
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09 12:12:47 +01:00
1174317e03
gnu: r-pcatools: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09 12:12:47 +01:00
b03c955c6f
gnu: r-scran: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
d4b5d18684
gnu: r-scater: Update to 1.18.3.
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* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
0e60dda0ae
gnu: Add r-scuttle.
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* gnu/packages/bioconductor.scm (r-scuttle): New variable.
2020-12-09 12:12:46 +01:00
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2020-12-09 12:12:46 +01:00
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
2020-12-09 12:12:46 +01:00
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
2020-12-09 12:12:46 +01:00
798ec28916
gnu: r-biocsingular: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
2020-12-09 12:12:46 +01:00
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09 12:12:46 +01:00
35dae95110
gnu: r-interactionset: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09 12:12:46 +01:00
5e719988f2
gnu: Add r-sparsematrixstats.
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* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09 12:12:46 +01:00
a23310ffc2
gnu: Add r-bluster.
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* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09 12:12:45 +01:00
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09 12:12:45 +01:00
16f16b5e21
gnu: Add r-msmstests.
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* gnu/packages/bioconductor.scm (r-msmstests): New variable.
2020-12-09 12:12:43 +01:00
e520c68fa9
gnu: Add r-msmseda.
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* gnu/packages/bioconductor.scm (r-msmseq): New variable.
2020-12-09 12:12:43 +01:00
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
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* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
c5ae5c1c40
gnu: r-rhdf5lib: Fix build.
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* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
2020-12-09 12:12:36 +01:00
79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
2020-12-09 12:12:36 +01:00
5992c25e7f
gnu: r-hdf5array: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
2020-12-09 12:12:36 +01:00
c8da013780
gnu: Add r-matrixgenerics.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
2020-12-09 12:12:36 +01:00
ed44a72acf
gnu: r-hitc: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
2020-12-09 12:12:35 +01:00
7105658e9c
gnu: r-fithic: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
2020-12-09 12:12:35 +01:00
b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
2020-12-09 12:12:35 +01:00
8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
2020-12-09 12:12:35 +01:00
e5b2c80dc2
gnu: r-fourcseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.
2020-12-09 12:12:35 +01:00
3cacc3bdce
gnu: r-icens: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.
2020-12-09 12:12:35 +01:00
126846a0da
gnu: r-m3c: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.
2020-12-09 12:12:35 +01:00
7a242042ae
gnu: r-rgreat: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.
2020-12-09 12:12:35 +01:00
15be98c136
gnu: r-biodist: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.
2020-12-09 12:12:34 +01:00
7891c83c3e
gnu: r-biocworkflowtools: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
feb0cbf402
gnu: r-biocset: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.
2020-12-09 12:12:34 +01:00
ff4834c065
gnu: Add r-biocio.
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* gnu/packages/bioconductor.scm (r-biocio): New variable.
2020-12-09 12:12:34 +01:00
6a5d8cadee
gnu: r-biocpkgtools: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.
2020-12-09 12:12:34 +01:00
072f722f8e
gnu: r-biocor: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.
2020-12-09 12:12:34 +01:00
e29b15ee97
gnu: r-bioconcotk: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.
2020-12-09 12:12:34 +01:00
13d0b780c1
gnu: r-multiassayexperiment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
49a728581f
gnu: r-experimenthub: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
abc18fc596
gnu: r-biocgraph: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
7dced9ad01
gnu: r-bioccasestudies: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
b0f3bfe4ae
gnu: r-ebarrays: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.
2020-12-09 12:12:34 +01:00
a4f4a55283
gnu: r-reactomepa: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
26224e09ae
gnu: r-graphite: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
zimoun
Ricardo Wurmus
Roel Janssen