46721deaf8
gnu: Add r-illuminahumanmethylation450kanno-ilmn12-hg19.
...
* gnu/packages/bioconductor.scm
(r-illuminahumanmethylation450kanno-ilmn12-hg19): New variable.
2019-09-05 11:46:29 +02:00
db316d7376
gnu: Add r-roc.
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* gnu/packages/bioconductor.scm (r-roc): New variable.
2019-09-05 11:46:29 +02:00
7d57bc4d0d
gnu: efl: Update to 1.22.4.
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* gnu/packages/enlightenment.scm (efl): Update to 1.22.4.
2019-09-05 12:42:50 +03:00
a3439b0c70
gnu: sbcl: Use CLISP instead of unboostrappable CCL to build.
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* gnu/packages/lisp.scm (sbcl)[arguments]: Build with CLISP.
2019-09-05 11:41:35 +02:00
9e737b31cb
gnu: sbcl: Update to 1.5.6.
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* gnu/packages/lisp.scm (sbcl): Update to 1.5.6.
2019-09-05 10:25:02 +02:00
01e38cc426
build-system/asdf: Add option to compress programs.
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* guix/build/lisp-utils.scm (build-program): Add `compress?' key argument.
(generate-executable-for-system): Same.
(generate-executable): Same.
2019-09-05 09:56:21 +02:00
2b332c51db
gnu: dolphin-emu: Update to commit a974540.
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* gnu/packages/emulators.scm (dolphin-emu): Update to commit a974540.
[source]: Delete unneeded MoltenVK map.
[arguments]: Properly hardcode libvulkan path.
2019-09-05 08:22:34 +02:00
b8e7e20841
gnu: docker: Add support for tini.
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* gnu/packages/docker.scm (docker)[inputs]: Add tini.
[phases]{patch-paths}: Patch the path of the default init binary.
2019-09-05 09:38:23 +09:00
92086eeda3
gnu: Add tini.
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* gnu/packages/docker.scm (tini): New variable.
2019-09-05 09:38:22 +09:00
9bf589867b
gnu: nginx: Update to 1.17.3 [security fixes].
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This release fixes CVE-2019-9511, CVE-2019-9513, and CVE-2019-9516.
* gnu/packages/web.scm (nginx): Update to 1.17.3.
2019-09-05 00:21:43 +02:00
fbcbafdcaa
gnu: miniupnpc: Update to 2.1.20190824.
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* gnu/packages/upnp.scm (miniupnpc): Update to 2.1.20190824.
2019-09-05 00:21:43 +02:00
56ac8ca3c8
gnu: varnish: Update to 6.2.1.
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* gnu/packages/web.scm (varnish): Update to 6.2.1.
2019-09-05 00:21:43 +02:00
276e7739b9
gnu: libnl: Update to 3.5.0.
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* gnu/packages/linux.scm (libnl): Update to 3.5.0.
2019-09-05 00:21:43 +02:00
309721b324
gnu: samba: Update to 4.10.8 [fixes CVE-2019-10197].
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* gnu/packages/samba.scm (samba): Update to 4.10.8.
2019-09-05 00:21:42 +02:00
173cced751
gnu: tevent: Update to 0.10.1.
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* gnu/packages/samba.scm (tevent): Update to 0.10.1.
2019-09-05 00:21:42 +02:00
1068bdcfe8
gnu: talloc: Update to 2.3.0.
...
* gnu/packages/samba.scm (talloc): Update to 2.3.0.
2019-09-05 00:21:42 +02:00
c0de48c9a5
gnu: tdb: Update to 1.4.2.
...
* gnu/packages/databases.scm (tdb): Update to 1.4.2.
2019-09-05 00:21:42 +02:00
e25973e18f
gnu: libvisio: Update to 0.1.7.
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* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.7.
2019-09-05 00:21:42 +02:00
558f4a30e2
gnu: libabw: Update to 0.1.3.
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* gnu/packages/libreoffice.scm (libabw): Update to 0.1.3.
[arguments]: Remove.
2019-09-05 00:21:41 +02:00
1a22a234df
gnu: LibRaw: Update to 1.19.5.
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* gnu/packages/photo.scm (libraw): Update to 0.19.5.
2019-09-05 00:21:41 +02:00
5ec7c4a153
gnu: php: Build against Oniguruma 6.
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* gnu/packages/php.scm (php)[inputs]: Change ONIGURUMA-5 to ONIGURUMA.
* gnu/packages/textutils.scm (oniguruma-5): Remove variable.
2019-09-05 00:21:41 +02:00
5ceac3f42b
gnu: oniguruma: Update to 6.9.3 [fixes CVE-2019-13224, CVE-2019-13225].
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* gnu/packages/textutils.scm (oniguruma): Update to 6.9.3.
2019-09-05 00:21:41 +02:00
56b1977a5d
build-system/julia: Avoid module cycles.
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* guix/build-system/julia.scm: Remove unused imports.
(lower)[julia]: Default to (DEFAULT-JULIA).
2019-09-05 00:20:41 +02:00
458b07ebe0
build-system/julia: Fix syntax error.
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* guix/build-system/julia.scm: Fix invalid module reference.
2019-09-04 23:56:24 +02:00
35d4862260
gnu: libxfce4util: Build Vala bindings.
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* gnu/packages/xfce.scm (libxfce4util)[native-inputs]: Add vala.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-04 23:41:08 +02:00
cb8a5e075a
gnu: libxfce4util: Add gobject-introspection support.
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* gnu/packages/xfce.scm (libxfce4util): Add gobject-introspection to native-inputs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-04 23:41:07 +02:00
b45e11dad8
gnu: Add xfce4-screensaver.
...
* gnu/packages/xfce.scm (xfce4-screensaver): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-04 23:41:07 +02:00
d28b6dda86
gnu: Add xfce4-screenshooter.
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* gnu/packages/xfce.scm (xfce4-screenshooter): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-04 23:41:07 +02:00
f475c6e53e
doc: Update 'README'.
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* README: Update intro a bit.
(Installing Guix as non-root): Remove as it's largely outdated.
(Contact): Update.
2019-09-04 23:41:07 +02:00
c26f562e5e
services: nginx: Pass run-directory on config test.
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Fixes <https://bugs.gnu.org/36388 >.
This fixes error logging errors in the activation script.
* gnu/services/web.scm (nginx-activation): Add "-p" flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-04 23:41:07 +02:00
8161c2d6ce
gnu: ghostscript: Keep the replacement private.
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This avoids having two matches for the "ghostscript" spec.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Keep private.
2019-09-04 23:41:07 +02:00
ce502774b4
gnu: ocaml-easy-format: Update to 1.3.2.
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* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.2.
2019-09-04 23:08:49 +02:00
e57dd20118
gnu: ocaml-frontc: Update to 3.4.2.
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* gnu/packages/ocaml.scm (ocaml-frontc): Update to 3.4.2.
2019-09-04 23:08:45 +02:00
4a8a0d8520
gnu: ocaml-ssl: Update to 0.5.9.
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* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.9.
2019-09-04 23:08:41 +02:00
5a3082eca8
gnu: opam: Update to 2.0.5.
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* gnu/packages/ocaml.scm (opam): Update to 2.0.5.
2019-09-04 23:08:38 +02:00
69c83817f8
gnu: ocaml-stringext: Update to 1.6.0.
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* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.6.0.
2019-09-04 23:08:34 +02:00
b3419c4027
gnu: ocaml-markup: Update to 0.8.1.
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* gnu/packages/ocaml.scm (ocaml-markup): Update to 0.8.1.
(ocaml-bisect-ppx): Use propagated-inputs instead of inputs.
2019-09-04 23:08:25 +02:00
72b2e2ea7a
gnu: ocaml-lwt-log: Update to 1.1.1.
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* gnu/packages/ocaml.scm (ocaml-lwt-log): Update to 1.1.1.
[source]: Use git-fetch.
2019-09-04 23:08:22 +02:00
8dfe8fee54
gnu: ocaml-biniou: Update to 1.2.1.
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* gnu/packages/ocaml.scm (ocaml-biniou): Update to 1.2.1.
2019-09-04 23:08:18 +02:00
b2f810fe93
import: opam: Use propagated-inputs instead of inputs.
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* guix/import/opam.scm (opam->guix-package): Use propagated-inputs instead of inputs.
2019-09-04 23:08:16 +02:00
d3366a8ee8
import: opam: Remove initial "v" in some version numbers.
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* guix/import/opam.scm (opam-fetch): Remove initial "v" in some version numbers.
2019-09-04 23:07:55 +02:00
11d73fb412
gnu: julia: Set search path.
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* gnu/packages/julia.scm (julia)[native-search-paths]: Add
specification for JULIA_LOAD_PATH.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-09-04 22:18:07 +02:00
a44a535ebe
build: Add julia-build-system.
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* guix/build/julia-build-system.scm: New file.
* guix/build-system/julia.scm: New file.
* Makefile.am (MODULES): Add them.
* doc/guix.texi (Build Systems): Document julia-build-system.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-09-04 22:17:38 +02:00
4ab97ef18f
Revert "gnu: texinfo: Fix cross-compilation."
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This causes too many rebuilds for the master branch.
This reverts commit 210b6412ee
2019-09-04 19:18:10 +02:00
7c93edb93e
gnu: librepcb: Update to 0.1.2.
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* gnu/packages/engineering.scm (librepcb): Update to 0.1.2.
2019-09-04 22:03:51 +05:30
210b6412ee
gnu: texinfo: Fix cross-compilation.
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* gnu/packages/texinfo.scm (texinfo)[arguments]: Do not reset environment
before running configure with the native compiler, in a cross-compilation
context,
[inputs]: move perl from here ...
[native-inputs]: ... to here. Also add ncurses that is needed in a
cross-compilation context to build texinfo native tools.
2019-09-04 18:25:17 +02:00
6ef379f879
gnu: make-linux-libre: Fix cross-compilation.
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* gnu/packages/linux.scm (make-linux-libre)[arguments]: Unset CROSS_CPATH to
make sure that cross-libc is not found. Otherwise, some of its header would
conflict with the one from linux (stdint.h and linux/types.h).
2019-09-04 18:21:19 +02:00
6202bb33eb
gnu: linux-libre: Enable built-in ext4 support.
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When running qemu-img from (gnu system vm) with an aarch64 kernel, mounting
ext4 partitions fails because no modprobe of ext4 module is made. Like for
other kernel configs, provide built-in support for ext4 partitions.
* gnu/packages/aux-files/linux-libre/5.2-arm64.conf: Enable built-in ext4,
like in intel and armhf configs.
2019-09-04 18:17:45 +02:00
7c35342472
gnu: grub: Fix cross-compilation.
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* gnu/packages/bootloaders.scm (grub)[arguments]: Search for unifont in both
native-inputs and inputs.
2019-09-04 18:14:25 +02:00
58a75996ec
gnu: glibc-utf8-locales: Fix cross-compilation.
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* gnu/packages/base.scm (glibc-utf8-locales)[inputs]: Move to ...
[native-inputs]: ... here, in order to fix cross-compilation.
* gnu/packages/commencement.scm (glibc-utf8-locales-final)[inputs]: Move to ...
[native-inputs]: ... here, in order to fix cross-compilation.
2019-09-04 18:05:59 +02:00
Ricardo Wurmus
Efraim Flashner
Pierre Neidhardt
Rutger Helling
Maxim Cournoyer
Marius Bakke
L p R n d n
Ludovic Courtès
Robert Vollmert
Julien Lepiller
nixo
Arun Isaac
Mathieu Othacehe