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Author SHA1 Message Date
Leo Famulari abe7afb17c
gnu: Make nothing depend on QtWebKit. 
This is required for <https://issues.guix.gnu.org/53289>.

* gnu/packages/qt.scm (python-pyqt)[inputs]: Remove qtwebkit.
(python-pyqt-without-qtwebkit): Remove variable.
(python-pyqtwebengine)[inputs]: Replace python-pyqt-without-qtwebkit with
python-pyqt.
* gnu/packages/backup.scm (vorta)[inputs]: Likewise.
* gnu/packages/ebook.scm (calibre)[inputs]: Likewise.
[arguments]: Adjust accordingly.
* gnu/packages/education.scm (anki)[inputs]: Replace
python-pyqt-without-qtwebkit with python-pyqt.
* gnu/packages/kde-games.scm (kajongg)[inputs]: Likewise.
* gnu/packages/maths.scm (veusz)[inputs]: Likewise.
* gnu/packages/music.scm (frescobaldi)[inputs]: Likewise.
(picard)[inputs]: Likewise.
* gnu/packages/orange.scm (orange)[inputs]: Likewise.
* gnu/packages/pdf.scm (flyer-composer)[inputs]: Likewise.
* gnu/packages/python-check.scm (python-pytest-qt)[propagated-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Likewise.
(python-pyqtgraph)[propagated-inputs]: Likewise.
* gnu/packages/radio.scm (gnuradio)[inputs]: Likewise.
* gnu/packages/video.scm (openshot)[inputs]: Likewise.
* gnu/packages/vpn.scm (openconnect-sso)[inputs]: Likewise.
* gnu/packages/web-browsers.scm (qutebrowser)[inputs]: Likewise.
 2023-02-17 14:49:13 -05:00
Vinicius Monego a7e174a458
gnu: Remove opencascade-oce. 
This package is unmaintained by upstream, has no dependents and was
replaced by opencascade-occt.

* gnu/packages/maths.scm (opencascade-oce): Remove variable.
* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: Remove file.
* gnu/local.mk: Unregister it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-02-11 00:09:39 +01:00
Andy Tai 417269da94
gnu: wxmaxima: Update to 22.12.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 22.12.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2023-02-08 17:09:07 +01:00
Efraim Flashner bd3e3d87a9
gnu: texlive-graphics: Use over deprecated texlive-latex-graphics. 
* gnu/packages/bioinformatics.scm (phyml)[native-inputs],
* gnu/packages/chemistry.scm (yaehmop)[native-inputs],
* gnu/packages/graphviz.scm (dot2tex)[propagated-inputs],
* gnu/packages/maths.scm (cddlib)[native-inputs],
* gnu/packages/statistics.scm (r-with-tests)[native-inputs],
* gnu/packages/tex.scm (texlive-apa6)[propagated-inputs]: Replace
texlive-latex-graphics with texlive-graphics.
 2023-01-30 20:07:49 +02:00
Efraim Flashner 4cf1acc7f3
Merge remote-tracking branch 'origin/master' into core-updates 
Conflicts:
	doc/guix.texi
	gnu/local.mk
	gnu/packages/admin.scm
	gnu/packages/base.scm
	gnu/packages/chromium.scm
	gnu/packages/compression.scm
	gnu/packages/databases.scm
	gnu/packages/diffoscope.scm
	gnu/packages/freedesktop.scm
	gnu/packages/gnome.scm
	gnu/packages/gnupg.scm
	gnu/packages/guile.scm
	gnu/packages/inkscape.scm
	gnu/packages/llvm.scm
	gnu/packages/openldap.scm
	gnu/packages/pciutils.scm
	gnu/packages/ruby.scm
	gnu/packages/samba.scm
	gnu/packages/sqlite.scm
	gnu/packages/statistics.scm
	gnu/packages/syndication.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
	gnu/packages/xml.scm
	guix/build-system/copy.scm
	guix/scripts/home.scm
 2023-01-30 12:39:40 +02:00
Andy Tai 298292e399
gnu: octave: Update to 7.3.0. 
* gnu/packages/maths.scm (octave): Update to 7.3.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-01-28 10:10:24 +08:00
Ludovic Courtès f84fdb3d89
gnu: hypre: Mark as tunable. 
* gnu/packages/maths.scm (hypre)[properties]: New field.
 2023-01-27 18:16:55 +01:00
Marius Bakke cdf98d19da
gnu: veusz: Don't depend on QtWebKit. 
* gnu/packages/maths.scm (veusz)[inputs]: Change from PYTHON-PYQT to
PYTHON-PYQT-WITHOUT-QTWEBKIT.
[arguments]: Use SEARCH-INPUT-DIRECTORY instead of label.
 2023-01-03 15:33:13 +01:00
Roman Scherer 66188398c4
gnu: netcdf: Update to 4.9.0. 
* gnu/packages/maths.scm (netcdf): Update to 4.9.0.
  [source]: Use new URI.
  [inputs]: Add libxml2 and unzip.
  [arguments]: Update 'configure-flags'. Add 'fix-test-rcmerge' phase.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-12-23 11:56:27 +01:00
Liliana Marie Prikler 4f94156452
gnu: Add python-telingo. 
* gnu/packages/patches/python-telingo-fix-comparison.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/maths.scm (python-telingo): New variable.
 2022-12-15 16:55:51 +01:00
Liliana Marie Prikler 1339623a42
gnu: Add python-clingo. 
* gnu/packages/maths.scm (python-clingo): New variable.
 2022-12-15 16:55:51 +01:00
Liliana Marie Prikler 25e3e0c6ec
gnu: clingo: Use G-Expressions. 
* gnu/packages/maths.scm (clingo)[arguments]: Convert to list of G-Expressions.
 2022-12-15 16:55:51 +01:00
Liliana Marie Prikler 188269f062
gnu: clingo: Update to 5.6.2. 
* gnu/packages/maths.scm (clingo): Update to 5.6.2.
[source]: Unbundle clasp and catch.
[arguments]<#:configure-flags>: Add “-DCLINGO_USE_LOCAL_CLASP=off” and
“-DCLINGO_USE_LOCAL_CATCH=off”.
[inputs]: Add catch2-3.1.
[native-inputs]: Add pkg-config.
 2022-12-15 16:55:51 +01:00
Efraim Flashner d896a4d2ff
gnu: suitesparse: Skip building graphblas on riscv64-linux. 
* gnu/packages/maths.scm (suitesparse)[arguments]: Add a phase when
building for riscv64-linux to skip building graphblas.
 2022-12-08 19:53:38 +02:00
Efraim Flashner 02d5912062
gnu: julia: Update to 1.8.3. 
* gnu/packages/julia.scm (julia): Update to 1.8.3.
[source]: Remove one patch.
[arguments]: Adjust 'prepare-deps phase to changes in inputs. Remove
custom 'use-system-libwhich, 'change-number-of-precompiled-statements,
'symlink-libraries phases. In 'fix-include-and-link-paths phase remove
substitution for utf8proc linking and adjust libuv linking. Fix
reference to shell in 'replace-default-shell phase. Adjust the
'shared-objects-path phase to changes in the source. Change the
'enable-parallel-tests phase for upstream changes. Adjust the
'adjust-test-suite phase to be more robust. Change the
'disable-broken-tests phase to help the test suite pass. Rename
'symlink-llvm-utf8proc phase to 'symlink-missing-libraries and add two
more. Adjust make-flags for changes in shared system libraries. Reorder
make-flags to changes in the source. Except for aarch64, use the
defaults for choosing to use 64-bit blas.
[inputs]: Add libblastrampoline. Replace libgit-1.1 with libgit-1.3,
utf8proc-2.7.1 with utf8proc-2.8.0.
[native-inputs]: Replace python-2 with python.
(libunwind-julia): Update to 1.5.0.
[source]: Update patches.
* gnu/packages/libevent.scm (libuv-julia): Update to 2.0.0-4.e6f0e49.
[arguments]: Also build static library, build position-independent-code.
* gnu/packages/llvm.scm (llvm-julia): Update to llvm-13, following
upstream's build instructions.
* gnu/packages/maths.scm (openlibm): Update to 0.8.1.
* gnu/packages/textutils.scm (utf8proc-2.7.1): Update and rename to
utf8proc-2.8.0.
[native-inputs]: Update unicode to 14.0.0.
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.28.0.
[source]: Remove snippet.
[arguments]: Remove trailing #t from phases.
* gnu/packages/patches/julia-allow-parallel-build.patch,
(julia-patch): Update version string to 1.8.2.
gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: Remove
files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Co-authored-by: Akira Kyle <akira@akirakyle.com>
 2022-12-08 19:53:16 +02:00
Akira Kyle 82babf242e
gnu: Add libblastrampoline. 
* gnu/packages/maths.scm (libblastrampoline): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-12-08 19:52:11 +02:00
Ricardo Wurmus 3423d32838
gnu: Add libfixmath. 
* gnu/packages/maths.scm (libfixmath): New variable.
 2022-11-27 21:02:43 +01:00
Liliana Marie Prikler 2404afea8b
gnu: Add cryptominisat. 
* gnu/packages/maths.scm (cryptominisat): New variable.

Co-authored-by: Maximilian Heisinger <mail@maxheisinger.at>
 2022-11-26 14:03:53 +01:00
Liliana Marie Prikler d3ce4a2619
gnu: Add louvain-community. 
* gnu/packages/maths.scm (louvain-community): New variable.
 2022-11-26 14:03:53 +01:00
Liliana Marie Prikler 58c24ec748
gnu: Add lingeling. 
* gnu/packages/maths.scm (lingeling): New variable.
 2022-11-26 14:03:53 +01:00
Liliana Marie Prikler fc061ce297
gnu: Add aiger. 
* gnu/packages/maths.scm (aiger): New variable.
 2022-11-26 14:03:53 +01:00
jgart 148c75e75e
gnu: clasp: Update to 3.3.9. 
* gnu/packages/maths.scm (clasp): Update to 3.3.9.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-11-24 14:08:54 +08:00
Greg Hogan ca428f944f
gnu: octave: Update to 7.2.0. 
* gnu/packages/maths.scm (octave): Update to 7.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-11-22 23:17:06 +01:00
Greg Hogan 7534d8067f
gnu: suitesparse: Update to 5.13.0. 
* gnu/packages/maths.scm (suitesparse): Update to 5.13.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-11-22 23:17:05 +01:00
Marius Bakke 41ca8f9c20
gnu: dune-alugrid: Fix build failure. 
* gnu/packages/maths.scm (dune-alugrid)[arguments]: Provide the INPUTS key in
build-tests phase.
 2022-11-22 08:37:24 +01:00
Marius Bakke 3d62d7648a
gnu: arpack-ng: Remove 3.3.0. 
This package fails to build and has no users in Guix.

* gnu/packages/maths.scm (arpack-ng-3.3.0): Remove variable.
 2022-11-22 08:37:23 +01:00
Artyom V. Poptsov e9e5e69ce5
gnu: opencascade-occt: Update to 7.6.2. 
* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-11-21 10:24:04 +01:00
Efraim Flashner a5d64173e0
gnu: cddlib: Add source file-name. 
* gnu/packages/maths.scm (cddlib)[source]: Add file-name field.
 2022-11-14 15:18:33 +02:00
Vagrant Cascadian a2e4e3489b
gnu: Various typo fixes. 
* gnu/packages/emacs-xyz.scm (emacs-popup-kill-ring)[description]: Fix very
  sneaky "This packages" variant. Thanks to nckhexen!
* gnu/packages/bioinformatics.scm (r-icellnet)[description]: Fix use of
  "allows to".
* gnu/packages/check.scm (python-pytest-freezegun)[description]: Ditto.
* gnu/packages/linux.scm (tp-smapi-module)[description]: Ditto.
* gnu/packages/mail.scm (procmail): Ditto.
* gnu/packages/maths.scm (maxima): Ditto.
* gnu/packages/samba.scm (wsdd)[description]: Ditto.
* gnu/packages/ssh.scm (openssh): Ditto.
 2022-10-24 17:35:19 -07:00
Marius Bakke c567a82a69
Merge branch 'staging' 2022-10-16 00:10:07 +02:00
Marius Bakke d799c8a5f6
gnu: fp16: Fix build on i686-linux. 
* gnu/packages/patches/fp16-implicit-double.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (fp16)[source](patches): Add it.
 2022-10-15 23:26:59 +02:00
Efraim Flashner 322917aeb8
Merge remote-tracking branch 'origin/master' into staging 
Conflicts:
	gnu/packages/gnuzilla.scm
	gnu/packages/graphics.scm
	gnu/packages/gstreamer.scm
	gnu/packages/gtk.scm
	gnu/packages/kde-frameworks.scm
	gnu/packages/video.scm
 2022-10-12 14:36:44 +03:00
Mike Swanson 77bcdb7439
gnu: units: Update to 2.22. 
* gnu/packages/maths.scm (units): Update to 2.22.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-10-02 14:36:23 +03:00
Maxim Cournoyer 990a4822f1
Merge branch 'staging' into core-updates 
Conflicts resolved in:
	gnu/local.mk
	gnu/packages/cran.scm
	gnu/packages/gnome.scm
	gnu/packages/gtk.scm
	gnu/packages/icu4c.scm
	gnu/packages/java.scm
	gnu/packages/machine-learning.scm
	gnu/packages/tex.scm
 2022-09-27 15:59:30 -04:00
Maxim Cournoyer 3c6e220d81
Merge branch 'master' into staging. 
With resolved conflicts in:
	gnu/local.mk
	gnu/packages/crates-io.scm
 2022-09-27 14:27:28 -04:00
Julien Lepiller b7971ff798
gnu: lablgtk3: Update to 3.1.2. 
* gnu/packages/ocaml.scm (lablgtk3): Update to 3.1.2.
[arguments]: Do not build extensions anymore (missing dependency)
* gnu/packages/games.scm (laby)[inputs]: Use
  `ocaml-lablgtk3-sourceview3'.
* gnu/packages/maths.scm (frama-c)[inputs]: Use
  `ocaml-lablgtk3-sourceview3'.
* gnu/packages/coq.scm (coq-ide)[inputs]: Use
  `ocaml-lablgtk3-sourceview3'.
 2022-09-22 07:34:02 +02:00
Marius Bakke 712ee76530
gnu: glm: Fix build with GCC 11. 
* gnu/packages/maths.scm (glm)[arguments]: Add phase set-environment.
 2022-09-08 21:40:00 +02:00
Marius Bakke cbb1cddbfb
gnu: gsl: Update to 2.7.1. 
* gnu/packages/maths.scm (gsl): Update to 2.7.1.
 2022-08-27 17:29:01 +02:00
Marius Bakke ad384816fe
Merge branch 'staging' into core-updates 2022-08-27 17:10:55 +02:00
Marius Bakke 1fd262e8d3
Merge branch 'master' into staging 2022-08-27 00:17:57 +02:00
Maximilian Heisinger 9ddd37d6ab
gnu: Add kissat. 
* gnu/packages/maths.scm (kissat): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2022-08-15 15:15:11 +02:00
Vagrant Cascadian b30614b28c
gnu: itpp: Remove non-deterministic log file. 
* gnu/packages/maths.scm (itpp)[arguments]: Add 'delete-formulas-log phase.
 2022-08-14 15:14:28 -07:00
Marius Bakke 77eb3008e3
Merge branch 'staging' into core-updates 2022-08-11 23:36:10 +02:00
Marius Bakke b50eaa6764
Merge branch 'master' into staging 2022-08-11 22:15:22 +02:00
Greg Hogan 8ed15dedbe
gnu: suitesparse: Update to 5.12.0. 
* gnu/packages/maths.scm (suitesparse): Update to 5.12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-08 17:26:18 +02:00
Julien Lepiller 8c5af33762
gnu: frama-c: Use lablgtk3. 
* gnu/packages/maths.scm (frama-c): Build the graphical interface.
 2022-08-10 23:32:03 +02:00
Daniel Meißner b72459a861
gnu: maxima: Fix to find info files. 
The Maxima command ‘describe’ allows to pick the relevant portions from
Maxima’s Texinfo docs.  However it does not support reading gzipped info
files.

* gnu/packages/maths.scm (maxima)[arguments]<phases>: Delete
'compress-documentation phase.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2022-08-10 15:16:53 +08:00
vicvbcun 0d9eef0a06
gnu: cddlib: Update to 0.94m. 
* gnu/packages/maths.scm (cddlib): Update to 0.94m.
[source]: Move to git, following the upstream decision.
[native-inputs]: New field.
[arguments]: New field to have docdir include the version number.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2022-08-09 14:17:04 +02:00
Andreas Enge 04f8e4194f
gnu: wxmaxima: Update to 22.05.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 22.05.0.
 2022-08-09 11:43:39 +02:00
Andreas Enge ecdd5d8563
gnu: maxima: Update to 5.46.0. 
* gnu/packages/maths.scm (maxima): Update to 5.46.0.
 2022-08-09 11:22:11 +02:00
Ludovic Courtès 12087b1b19
gnu: mumps: Add alternate source code URL. 
* gnu/packages/maths.scm (mumps)[source]: Add alternate URL.
 2022-08-05 15:28:05 +02:00
FELŠÖCI Marek b70d6ce627
gnu: mumps: Update to 5.5.1 
* gnu/packages/maths.scm (mumps): Update to 5.5.1. Stop applying patches as the build configuration has been updated upstream. Allow for further optimized BLR compression by specifying the -DBLR_MT build option.
* gnu/packages/patches/mumps-build-parallelism.patch: File removed.
* gnu/packages/patches/mumps-shared-libseq.patch: File removed.
* gnu/packages/patches/mumps-shared-mumps.patch: File removed.
* gnu/packages/patches/mumps-shared-pord.patch: File removed.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-05 15:28:04 +02:00
Felix Gruber 644646beab
gnu: veusz: Fix build. 
* gnu/packages/maths.scm (veusz)[arguments] Fix lookup of qtsvg path
  in wrap-executable phase.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-08-05 14:26:32 +02:00
Philip McGrath 86c0bc5d48
gnu: Add itex2mml. 
* gnu/packages/maths.scm (itex2mml): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-04 12:05:50 +02:00
Paul A. Patience 797f3de592
gnu: gnuplot: Update to 5.4.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:50:01 +03:00
Paul A. Patience a53bc40036
gnu: gnuplot: Use G-expressions. 
* gnu/packages/maths.scm (gnuplot)[arguments]: Use G-expressions.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:49:56 +03:00
Paul A. Patience 44c7098809
gnu: gnuplot: Remove input labels. 
* gnu/packages/maths.scm (gnuplot)[inputs]: Move below native-inputs and
sort.
[native-inputs]: Remove labels.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-08-02 20:49:50 +03:00
Efraim Flashner 29c51c6525
gnu: wcalc: Remove pre-generated files. 
* gnu/packages/maths.scm (wcalc)[source]: Add snippet to remove files
generated by bison and flex.
[native-inputs]: Add bison, flex.
 2022-08-02 19:47:50 +03:00
Paul A. Patience 18d998ffdb
gnu: trilinos-for-dealii-openmpi: Use G-expressions. 
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[arguments]: Use
G-expressions.
<#:phases>: Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:27 +02:00
Paul A. Patience 32bcadc98c
gnu: trilinos-for-dealii-openmpi: Remove input labels. 
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs,
inputs, propagated-inputs]: Remove labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience a42730183a
gnu: dealii: Update to 9.4.0. 
* gnu/packages/maths.scm (dealii): Update to 9.4.0.
[propagated-inputs]: Replace sundials-5 with sundials.
(dealii-openmpi)[propagated-inputs]: Replace sundials-openmpi-5 with
sundials-openmpi.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience 6a15bd031f
gnu: dealii: Use G-expressions. 
* gnu/packages/maths.scm (dealii)[snippet, arguments]: Use
G-expressions.
(dealii-openmpi)[arguments]: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience bbf5e033d4
gnu: trilinos-for-dealii-openmpi: Fix build. 
* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs]:
Add gcc-7 to fix the failing build with newer versions of gcc.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 17:20:26 +02:00
Paul A. Patience e0de48f0e4
gnu: hdf5-1.8: Add missing comma to linker flag. 
* gnu/packages/maths.scm (hdf5-1.8)[arguments]<#:phases>: Add missing
comma to linker flag.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-08-01 14:08:08 +02:00
Maxim Cournoyer eef8e2ec46
gnu: qttools: Rename to qttools-5. 
Automated with:

  git grep -l qttools | xargs sed 's/\bqttools\b/\0-5/g' -i
  git checkout NEWS
 2022-07-31 21:55:48 -04:00
Maxim Cournoyer 1ef04fb228
gnu: qtsvg: Rename variable to qtsvg-5. 
This is in preparation of the qtsvg update to version 6.

This change was automated via the following command:

  git grep -l '\bqtsvg\b' | xargs sed 's/qtsvg/qtsvg-5/g' -i
 2022-07-31 21:55:43 -04:00
Marius Bakke 9044b086dd
Merge branch 'staging' into core-updates 2022-07-22 01:09:14 +02:00
Ludovic Courtès b09e968667
gnu: Avoid use of deprecated texlive packages. 
* gnu/packages/cran.scm (r-prereg)[propagated-inputs]: Avoid deprecated
texlive package names.
* gnu/packages/python-xyz.scm (python-nbconvert)[native-inputs,
propagated-inputs]: Likewise.
* gnu/packages/sphinx.scm (python-sphinx)[propagated-inputs]: Likewise.
* gnu/packages/maths.scm (hypre)[native-inputs]: Remove redundant and
deprecated 'texlive-latex-titlesec'.
 2022-07-17 11:56:45 +02:00
Paul A. Patience fa21cd31cb
gnu: gmsh: Update to 4.10.5. 
* gnu/packages/maths.scm (gmsh): Update to 4.10.5.
[source]: Reindent.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-15 09:46:16 +01:00
Paul A. Patience ab636bde18
gnu: gmsh: Remove trailing booleans. 
* gnu/packages/maths.scm (gmsh)[snippet, arguments]: Remove trailing
booleans.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-15 09:46:15 +01:00
Paul A. Patience d10af3fc97
gnu: gmsh: Remove input labels. 
* gnu/packages/maths.scm (gmsh)[inputs]: Remove labels.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2022-07-15 09:46:15 +01:00
Maxim Cournoyer 734f50c31d
gnu: elpa: Update source URL. 
Fixes <https://issues.guix.gnu.org/46460>.

* gnu/packages/maths.scm (elpa): Update source URL.

Reported-by: Danny Milosavljevic <dannym@scratchpost.org>
 2022-07-13 01:08:59 -04:00
Nicolas Goaziou c0f6287974
gnu: nauty: Update package style. 
* gnu/packages/maths.scm (nauty)[arguments]: Use G-expressions. Remove
trailing #T.
 2022-07-04 15:22:03 +02:00
Nicolas Goaziou c3a2d354e3
gnu: nauty: Update to 2.7r4. 
* gnu/packages/maths.scm (nauty): Update to 2.7r4.
 2022-07-04 15:19:11 +02:00
Sharlatan Hellseher e8e7b4cdae
gnu: Add giza 
* gnu/packages/maths.scm (giza): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:05 +02:00
Zhu Zihao 0e64835b2e
gnu: z3: Prefer CMake to build the package. 
Z3 developer recommends to use CMake to build Z3 except the OCaml bindings.
Use CMake also enable us to cross compile z3.

* gnu/packages/maths.scm (z3)[build-system]: Use cmake-build-system.
[arguments]<#:configure-flags>: Add flags for CMake.
<#:phases>: Remove stale phase 'fix-compatability'.
In phase 'check', build the z3 test binary and don't test when cross
compiling.
Add phase 'compile-python-modules' phase to generate python bytecode cache for
z3 python binding.
Add phase 'fix-z3-library-path' to help z3 pythong binding to find the z3
shared library.

(ocaml-z3)[build-system]: Override the inherited value with 'gnu-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:04 +02:00
Zhu Zihao cec5142183
gnu: z3: Update to 4.8.17. 
* gnu/packages/maths.scm (z3): Update to 4.8.17.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:04 +02:00
Zhu Zihao 3366be5db0
gnu: z3: Use G-expressions. 
* gnu/packages/maths.scm (z3)[arguments]: Use G-expressions.
[native-inputs]: Use label-less style.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-07-04 12:29:04 +02:00
Jan (janneke) Nieuwenhuizen 36a0ec9e78
gnu: mcrl2: Update to 202206.0. 
* gnu/packages/patches/mcrl2-fix-1687.patch,
gnu/packages/patches/mcrl2-fix-counterexample.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (mcrl2): Update to 202206.0 and use them.
 2022-07-01 15:45:37 +02:00
Marius Bakke 8ee9d25ebc
gnu: OpenBLAS: Use G-expressions. 
* gnu/packages/maths.scm (openblas, openblas-ilp64)[arguments]: Convert to
gexp's.
 2022-06-30 23:26:19 +02:00
Greg Hogan 4eddce8ce9
gnu: octave: Update to 7.1.0. 
* gnu/packages/maths.scm (octave): Update to 7.1.0.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-06-30 11:23:38 +02:00
Marius Bakke 2a7648774f
Merge branch 'master' into core-updates 2022-06-27 19:23:48 +02:00
Ludovic Courtès 8655a71445
Merge branch master into core-updates 2022-06-22 18:48:00 +02:00
Ontje Lünsdorf d651f28017
gnu: hypre: Add missing dependencies on latex fonts. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Add TEXLIVE-COURIER and
TEXLIVE-HELVETIC.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-23 23:20:57 +02:00
Ludovic Courtès 091eb323ba
Merge branch 'master' into staging 2022-06-08 14:53:16 +02:00
Ludovic Courtès 8c3e9da13a
Merge branch 'master' into core-updates 2022-06-08 14:46:24 +02:00
Vagrant Cascadian a04a987450
gnu: itpp: Avoid embedding build dates. 
* gnu/packages/maths.scm (itpp): Add 'set-man-page-date and
  'set-force-source-date phases.
 2022-06-06 13:50:46 -07:00
Efraim Flashner 64c043e63a
Merge remote-tracking branch 'origin/master' into staging 2022-06-01 12:42:04 +03:00
Maxim Cournoyer 8824061544
gnu: Remove python2-kiwisolver. 
* gnu/packages/maths.scm (python2-kiwisolver): Delete variable.
 2022-05-31 14:53:36 -04:00
Maxim Cournoyer 5ab0cbd0f1
gnu: Remove python2-numpy. 
* gnu/packages/python-xyz.scm (python2-numpy): Delete variable.
(python2-numpy-1.8): Likewise.
(python-numpy)[properties]: Delete field.
* gnu/packages/maths.scm (flann): Delete comment.
* gnu/packages/chemistry.scm (with-numpy-1.8): Delete procedure.
 2022-05-31 14:53:34 -04:00
SeerLite 7115a075f3
gnu: ruby-asciimath: Update to 2.0.4. 
gnu/packages/math.scm (ruby-asciimath): Update to 2.0.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-06-04 00:11:44 +02:00
Ricardo Wurmus 2e2fed31a3
gnu: nlopt: Update to 2.7.1. 
* gnu/packages/maths.scm (nlopt): Update to 2.7.1.
[source]: Fetch from git.
[build-system]: Use cmake-build-system.
[arguments]: Adjuts 'set-libnlopt-file-name phase.
[inputs]: Replace guile-2.0 with guile-3.0; add octave and python.
[native-inputs]: Add swig.
 2022-05-28 23:19:04 +02:00
Ludovic Courtès 1038f7d681
gnu: openblas: Remove input labels. 
* gnu/packages/maths.scm (openblas)[inputs, native-inputs]: Remove labels.
[arguments]: In 'set-extralib' phase, use 'search-input-file'.
 2022-05-15 22:49:49 +02:00
Aurora 20eadd425e
gnu: openblas: Update to 0.3.20 
* gnu/packages/maths.scm (openblas): Update to 0.3.20.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-15 22:49:49 +02:00
Pierre-Antoine Bouttier 6829d61bc5
gnu: Add n2p2. 
* gnu/packages/maths.scm (n2p2): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-05 23:56:58 +02:00
Paul A. Patience 8b2d266607
gnu: dealii: Update to 9.3.3. 
* gnu/packages/maths.scm (dealii): Update to 9.3.3.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
Delete file.
* gnu/packages/patches/dealii-fix-sundials.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience 240b604eda
gnu: dealii: Add SUNDIALS dependency. 
* gnu/packages/maths.scm (dealii)[propagated-inputs]: Add sundials-5.
Reformat list to clarify comment.
(dealii-openmpi)[propagated-inputs]: Add sundials-openmpi-5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience d34f941c33
gnu: dealii-openmpi: Remove input labels. 
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Remove labels.
[propagated-inputs]: Same.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience e131f705dd
gnu: dealii: Remove trailing booleans. 
* gnu/packages/maths.scm (dealii)[snippet]: Remove trailing boolean (and
therefore the 'begin').
[native-inputs, inputs]: Reindent.
[arguments]<#:phases>: Remove trailing boolean.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:28 +02:00
Paul A. Patience e648957b7b
gnu: sundials: Add 5.8.0. 
* gnu/packages/maths.scm (sundials-5, sundials-openmpi-5): New
variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience d1a6a795b3
gnu: sundials: Update to 6.2.0. 
* gnu/packages/maths.scm (sundials): Update to 6.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience 4c509a73b7
gnu: sundials-openmpi: Add HYPRE dependency. 
* gnu/packages/maths.scm (sundials-openmpi)[propagated-inputs]: Add
hypre-openmpi.
[arguments]<#:configure-flags>: Add -DENABLE_HYPRE, -DHYPRE_INCLUDE_DIR
and -DHYPRE_LIBRARY_DIR.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience 0d3c2c9543
gnu: sundials: Fix various issues. 
This commit fixes various issues. First, some of SUNDIALS's CMake
variables were renamed at some point between 5.2.0 and 5.7.0, in
particular KLU_ENABLE, which was changed to ENABLE_KLU. Since
sundials-julia is essentially SUNDIALS 5.2.0, its configure flags need
to be different from those of the sundials package. Second, commit
61bcd648ca, which updated SUNDIALS to
6.1.1, accidentally completely disabled PETSc support for
sundials-openmpi (PETSc is supported only with MPI) by removing the
relevant configure flags. Third, SUNDIALS's default index size is
64 bits, but PETSc's is 32 bits, and they need to be the same; this
issue is discussed in the next three paragraphs.

The default index size in SUNDIALS 3.1.1 (which was the sundials
package's version previous to the aforementioned commit) was also
64 bits (though it was configured through the SUNDIALS_INDEX_TYPE CMake
variable, which could take the values INT64_T or INT32_T), but
SUNDIALS's configure script didn't warn of any incompatibility with
PETSc's 32-bit indices. I don't know if this was an accidental omission
from the configure script or if SUNDIALS's index size didn't have to
correspond to PETSc's at the time.

Keeping 64-bit indices in SUNDIALS would require adding a package for
PETSc with 64-bit indices (using the --with-64-bit-indices configure
flag), possibly named petsc64-openmpi (to follow the style of the SCOTCH
packages, i.e., scotch, scotch32, etc., though there the unadorned
package name represents the 64-bit version, unlike the unadorned petsc),
which would in turn require a package for METIS with 64-bit
indices (using IDXTYPEWIDTH=64). However, SUNDIALS is an optional
dependency of deal.II, both of which have PETSc as an optional
dependency, and deal.II's index size (which defaults to 32 bits) must
match PETSc's. In other words, the current deal.II package can build
with SUNDIALS only if SUNDIALS has 32-bit indices.

Furthermore, users needing 64-bit indices in SUNDIALS probably also need
them in PETSc and other libraries. If and when 64-bit indices are deemed
necessary, we can add all the package variations at once (for SUNDIALS,
PETSc, METIS, deal.II and any others).

* gnu/packages/maths.scm (sundials)[source]: Reuse version in URL.
[native-inputs]: Capitalize and punctuate comment.
[inputs]: Remove petsc, now unnecessary gfortran, and obsolete
comment. Move TODO item to sundials-openmpi.
[arguments]<#:configure-flags>: Add -DSUNDIALS_INDEX_SIZE=32 to match
PETSc's 32-bit indices. Remove obsolete -DEXAMPLES_ENABLE_F77,
-DEXAMPLES_ENABLE_F90 and -DFCMIX_ENABLE. Mention new but currently
unusable -DBUILD_FORTRAN_MODULE_INTERFACE and
-DEXAMPLES_ENABLE_F2003. Rename KLU_ENABLE to ENABLE_KLU.
(sundials-openmpi): Use package/inherit.
[inputs]: Move openmpi and petsc-openmpi from here...
[propagated-inputs]: ...to here. Clarify comment.
[arguments]<#:configure-flags>: Add -DENABLE_PETSC and -DPETSC_DIR, the
equivalents of which were accidentally removed in commit
61bcd648ca.
<#:phases>: Replace a tab with spaces.
[synopsis]: Replace OpenMPI with MPI to conform to other package
synopses.
(sundials-julia)[inputs]: Add gfortran.
[arguments]<#:configure-flags>: Set only, and manually, -DCMAKE_C_FLAGS,
-DSUNDIALS_INDEX_SIZE, -DKLU_ENABLE, -DKLU_INCLUDE_DIR,
-DKLU_LIBRARY_DIR and -DLAPACK_ENABLE instead of inheriting from the
sundials package, because some of SUNDIALS's CMake variables have
changed name.
[synopsis]: Capitalize “LAPACK”.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience a3b6a4df6c
gnu: petsc-openmpi: Fix header inclusions. 
* gnu/packages/maths.scm (petsc-openmpi)[arguments]: Add
'patch-header-inclusions' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-05-03 18:02:27 +02:00
Paul A. Patience ee89bbb5ed
gnu: nomad-optimizer: Disable failing test. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Disable the
examples/advanced/library/PSDMads test.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2022-04-26 10:45:42 +02:00
Andreas Enge bfe6d6ea66
gnu: lrslib: Update to 7.2. 
* gnu/packages/maths.scm (lrslib): Update to 7.2.
 2022-04-19 16:09:32 +02:00
Paul A. Patience d262a258bb
gnu: nomad-optimizer: Fix some tests. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]<#:phases>
[fix-sources-for-tests]: Enable the pipefail option in the (generated)
script that runs tests. Enable the basic batch example3 test. Fix the
advanced library FixedVariable test (and seemingly the neighbor PSDMads
test). Expand some comments.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience 11e761b9a6
gnu: nomad-optimizer: Update to 4.2.0. 
* gnu/packages/maths.scm (nomad-optimizer): Update to 4.2.0.
[arguments]: Accommodate updated build process.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience 3a6703268b
gnu: nomad-optimizer: Remove trailing booleans. 
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Remove trailing
booleans.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience 3a9b925f44
gnu: nomad-optimizer: Remove input labels. 
* gnu/packages/maths.scm (nomad-optimizer)[native-inputs]: Remove
labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience d483dbe0fa
gnu: gmsh: Update to 4.9.5. 
* gnu/packages/maths.scm (gmsh): Update to 4.9.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:44 +02:00
Paul A. Patience 7488c73dd2
gnu: gnuplot: Update to 5.4.3. 
* gnu/packages/maths.scm (gnuplot): Update to 5.4.3.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-19 12:29:43 +02:00
Ludovic Courtès 16372cb347
gnu: sundials: Remove input labels. 
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
 2022-04-14 14:48:21 +02:00
Ludovic Courtès 61bcd648ca
gnu: sundials: Update to 6.1.1. 
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags.  Change "MPI_ENABLE" to "ENABLE_MPI".
 2022-04-14 14:48:21 +02:00
Arun Isaac 973ee1c91d
gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux. 
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2022-03-31 16:14:52 +03:00
Maxim Cournoyer a9429c8f22
Merge branch 'staging' into core-updates. 2022-03-21 23:39:43 -04:00
Ludovic Courtès 2da0f2828b
gnu: petsc-openmpi: Remove input labels. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Adjust label name for hdf5.
 2022-03-18 16:03:32 +01:00
Ludovic Courtès 5f83f95210
gnu: petsc-openmpi: Fix compilation with Scotch 7.0. 
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add SCOTCH:METIS.
[arguments]: Add 'adjust-pt-scotch-library-names' phase.
 2022-03-18 16:03:32 +01:00
Nicolas Goaziou 359636a408
gnu: texlive-latex-titlesec: Rename to texlive titlesec. 
* gnu/packages/tex.scm (texlive-titlesec): New variable.
(texlive-latex-titlesec): Deprecate name.
* gnu/packages/python-xyz.scm (python-ipython-documentation):
(python-numpy-documentation):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/maths.scm (hypre): Use new name.
 2022-03-09 00:26:30 +01:00
Ludovic Courtès 6e09ab9f61
gnu: scotch: Explicitly pass "-DINTSIZE" to CMake. 
Previously, the 'scotch' and 'pt-scotch' packages would use the default
int size, which turned out to be 32 on x86_64-linux instead of 64 as it
used to be in Scotch 6.x.

* gnu/packages/maths.scm (scotch)[arguments]: Add "-DINTSIZE" to #:configure-flags.
(scotch32)[arguments]: Likewise.
(pt-scotch)[arguments]: Likewise.
(pt-scotch32)[arguments]: Likewise.
 2022-03-07 22:49:27 +01:00
Nicolas Goaziou c2777bb64f
gnu: Rename texlive-latex-fancyvrb to texlive-fancyvrb. 
* gnu/packages/tex.scm (texlive-fancyvrb): New variable, renamed from
TEXLIVE-LATEX-FANCYVRB.
(texlive-latex-fancyvrb): Deprecate variable.
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation):
(python-nbconvert):
* gnu/packages/statistics.scm (r-with-tests): Use new name.
 2022-03-04 02:25:12 +01:00
Nicolas Goaziou 91aa20e237
gnu: Add texlive-fancyhdr. 
* gnu/packages/tex.scm (texlive-fancyhdr): New variable.
(texlive-latex-fancyhdr): Deprecate variable.
(texlive-jadetex):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation):  Use new variable.
 2022-03-04 02:21:25 +01:00
Ludovic Courtès 96bc9420cb
gnu: hypre: Remove input labels. 
* gnu/packages/maths.scm (hypre)[native-inputs, inputs]: Remove labels.
(hypre-openmpi)[inputs]: Use 'modify-inputs'.
 2022-03-02 19:26:16 +01:00
Ludovic Courtès 5a04a8a6bc
gnu: texlive-latex-wrapfig: Rename to "texlive-wrapfig". 
* gnu/packages/tex.scm (texlive-latex-wrapfig): Rename to...
(texlive-wrapfig): ... this.
(texlive-latex-wrapfig): Define as deprecated.
* gnu/packages/maths.scm (hypre)[native-inputs]: Use new name.
* gnu/packages/python-xyz.scm (python-ipython-documentation)
(python-numpy-documentation): Likewise.
 2022-03-02 19:26:16 +01:00
Julien Lepiller 8fc4cfd3ce
gnu: why3: Update to 1.4.1. 
* gnu/packages/maths.scm (why3): Update to 1.4.1.
 2022-03-02 09:45:16 +01:00
Marius Bakke 1bd1f42a31
gnu: Remove unneeded uses of 'libiconv'. 
iconv is part of glibc, there is no need to add it as input.

* gnu/packages/accessibility.scm (brltty)[inputs]: Remove LIBICONV.
* gnu/packages/compression.scm (innoextract)[inputs]: Likewise.
* gnu/packages/haskell-apps.scm (darcs)[inputs]: Likewise.
* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Likewise.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Likewise.
* gnu/packages/mail.scm (mailutils)[inputs]: Likewise.
* gnu/packages/maths.scm (libqalculate)[inputs]: Likewise.
* gnu/packages/pep.scm (pep-engine)[inputs]: Likewise.
* gnu/packages/vim.scm (neovim)[inputs]: Likewise.
* gnu/packages/wget.scm (wget2)[inputs]: Likewise.
* gnu/packages/telegram.scm (telegram-desktop)[inputs]: Likewise.
* gnu/packages/video.scm (transcode)[native-inputs]: Likewise.
 2022-02-15 20:44:21 +01:00
Ludovic Courtès ee92b0fb7d
gnu: mumps: Remove input labels. 
* gnu/packages/maths.scm (mumps)[inputs]: Remove labels.
[arguments]: Adjust 'configure' phase to not rely on the "mpi" and
"blas" labels.
(mumps-metis, mumps-openmpi, mumps-metis-openmpi): Use 'modify-inputs'.
 2022-02-15 17:24:08 +01:00
Ludovic Courtès d4709d78c3
gnu: scotch: Update to 7.0.1. 
* gnu/packages/maths.scm (scotch): Update to 7.0.1.
[source]: Switch to 'git-fetch'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.  Remove #:make-flags.  Remove
'chdir-to-src', 'configure', and 'build-esmumps' phases.
[properties]: Update 'release-monitoring-url' property.
(scotch32, pt-scotch, pt-scotch32): Update accordingly, replacing now
useless build phases with #:configure-flags.
(scotch-shared, pt-scotch-shared): Mark as deprecated.
(mumps)[arguments]: In 'configure' phase, use '-lesmumps'
unconditionally, since that's now how pt-scotch calls it.
 2022-02-15 17:24:08 +01:00
Petr Hodina 4c1dff9abe
gnu: opencascade-occt: Update to 7.6.0. 
* gnu/packages/maths.scm (opencascade-occt): Update to 7.6.0.
  [native-inputs]: Add fontconfig.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-02-11 16:47:45 +01:00
Eric Bavier 10b901a437
gnu: superlu: Update to 5.3.0. 
* gnu/packages/maths.scm (superlu): Update to 5.3.0.
[source]: Adjust to new url.
 2022-02-05 00:24:40 -06:00
Efraim Flashner 264162124f
gnu: openblas: Fix building on riscv64-linux. 
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on
riscv64-linux to target the correct architecture when building for
riscv64-linux.
 2022-02-01 10:44:53 +02:00
Nicolas Goaziou c5f1f8b81e
gnu: Properly deprecate texlive-generic-ulem. 
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/maths.scm (hypre): Apply deprecation.
* gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation
command.
 2022-01-28 15:05:01 +01:00
Nicolas Goaziou 2b37ec1c60
gnu: Remove occurrences of deprecated texlive-latex-capt-of. 
* gnu/packages/maths.scm (hypre):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
 2022-01-28 14:37:49 +01:00
Morgan Smith d0744d8650
gnu: jacal: Update to 1c7. 
* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete this.
* gnu/packages/maths.scm (jacal)[source]: Delete this patch.
[version]: Update to 1c7.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2022-01-22 12:07:55 +03:00
Felix Gruber 895a2669df
gnu: dune-pdelab: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:15 +01:00
Felix Gruber ad0a7a16d9
gnu: dune-functions: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-functions): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:15 +01:00
Felix Gruber adc65e9691
gnu: dune-typetree: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-typetree): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber fb6e3fdfa7
gnu: dune-subgrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber fff6f00c35
gnu: dune-alugrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1.
  [version]: Use `git-version` to compute the version string.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber ef07f19b93
gnu: dune-localfunctions: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber 8159cd08d2
gnu: dune-istl: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-istl): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.
  [source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber 67e6b69916
gnu: dune-grid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-grid): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber 15ae25bd25
gnu: dune-uggrid: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:14 +01:00
Felix Gruber 9e5cdc4a6c
gnu: dune-geometry: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-geometry): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber 3bfcc63c31
gnu: dune-common: Update to 2.7.1. 
* gnu/packages/maths.scm (dune-common): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber 6b36def51c
gnu: Modernize add-openmpi-to-dune-package 
* gnu/packages/maths.scm (add-openmpi-to-dune-package): Use
  modify-inputs.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-20 15:28:13 +01:00
Felix Gruber cc4553c6b3
gnu: Remove python2-cvxopt. 
* gnu/packages/maths.scm (python2-cvxopt): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-12 14:12:47 -05:00
Felix Gruber 21bc72ad81
gnu: python-cvxopt: Update to 1.2.7. 
* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-01-12 14:12:47 -05:00
Felix Gruber cd68fc1e42
gnu: ceres: Update to 2.0.0. 
* gnu/packages/maths.scm (ceres): Update to 2.0.0.
  [inputs]: Use simplified format.
  (ceres-solver-benchmarks)[phases]: Add schur_eliminator_benchmark.
  Replace autodiff_cost_function_benchmark with new autodiff_benchmarks.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-01-11 20:35:00 +01:00
Felix Gruber 80f616139c
gnu: dealii: Update to 9.3.2. 
* gnu/packages/maths.scm (dealii): Update to 9.3.2.
  [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and
  dealii-fix-sundials.patch.
  [inputs]: Use simplified format.
  [native-inputs]: Use simplified format.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
  New file.
* gnu/packages/patches/dealii-fix-sundials.patch: New file.
* gnu/local.mk: Add new patch files.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-11 10:43:47 +01:00