8c21c9ad23
gnu: python-peachpy: Limit to x86_64-linux.
...
* gnu/packages/python-xyz.scm (python-peachpy)[supported-systems]: New
field.
Change-Id: I1e0660ac95377130e919ba9ff00c59063ea2bdce
2024-05-19 16:10:51 +03:00
85fa9458a1
gnu: python-numba: Adjust test suite on several architectures.
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* gnu/packages/python-xyz.scm (python-numba)[arguments]: Adjust the
'disable-failing-tests phase to skip some additional tests on
aarch64-linux and powerpc64le-linux. Also when building for armhf-linux
accept a wider range of python platforms as being part of armhf-linux.
Change-Id: If9edf9282684931a2a4cdcfed692ed3da1d4ec6e
2024-05-19 16:10:51 +03:00
75f3cca50a
gnu: python-pivy: Update to 0.6.8.
...
* gnu/packages/python-xyz.scm (python-pivy): Update to 0.6.8.
Change-Id: I7375a8261bd24ae1c2f54c6889e1a39d6db93468
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15 13:53:46 +02:00
d8d0fdd25c
gnu: python-pivy: Fix build.
...
"python-pivy" build fails when "soqt" is in the inputs (see
<https://bugs.gentoo.org/920482 >.)
* gnu/packages/python-xyz.scm (python-pivy): Fix build.
[inputs]: Remove "soqt".
[arguments]: Use gexps.
Change-Id: If332ccd42b3a373e7b4118f3bcbc3646e8b59d41
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15 13:49:01 +02:00
83289a64ec
gnu: python-lazy-loader: Update to 0.4.
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This fixes python-scikit-image build failure as seen in
<https://ci.guix.gnu.org/build/4357310/log/raw >.
* gnu/packages/python-xyz.scm (python-lazy-loader): Update to 0.4.
[native-inputs]: Remove python-pre-commit and python-pytest-cov; add python-numpy.
Change-Id: Ie236fb30fd505fed1e07fd236403f9f456a37f29
2024-05-15 11:08:02 +01:00
109679cdfa
Revert "gnu: python-xcffib: Update to 1.4.0."
...
This reverts commit 56980ea500
2024-05-13 11:00:00 +03:00
ca571f4259
gnu: Add python-vdf.
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* gnu/packages/python-xyz.scm (python-vdf): New variable.
Reviewed-by: Steve George <steve@futurile.net>
Signed-off-by: Christopher Baines <mail@cbaines.net>
Change-Id: Ie8a14292b9c9937d22f011ac078562e81abd6b36
2024-05-12 18:40:33 +01:00
56980ea500
gnu: python-xcffib: Update to 1.4.0.
...
* gnu/packages/python-xyz.scm (python-xcffib): Update to 1.4.0.
[arguments]: Remove obsolete 'install-doc phase. Remove trailing #t
from phases.
Change-Id: I1b68ddffb2620938042384b9b9a0d444ad05bb0a
2024-05-12 10:53:35 +03:00
86c896c12e
gnu: python-kombu: Update to 5.3.7.
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* gnu/packages/python-xyz.scm (python-kombu): Update to 5.3.7.
Change-Id: I6bfb3e4bb508d5003f5db45d1d8d35bd6b15064f
2024-05-11 16:13:52 -03:00
27664208e3
gnu: python-folium: Update to 0.16.0.
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* gnu/packages/python-xyz.scm (python-folium): Update to 0.16.0.
[build-system]: Use pyproject-build-system.
[arguments]<#:test-flags>: Skip failing tests.
<#:phases>: Add phase 'pretend-version.
[propagated-inputs]: Add python-xyzservices.
[native-inputs]: Add python-geopandas, python-nbconvert, python-pandas,
python-pillow, python-selenium, python-setuptools-scm.
Change-Id: I93db72f62306c8db2a069733b49ac0933c8888ce
2024-05-11 16:13:52 -03:00
6fa742ab31
gnu: python-hy: Update to 0.28.0.
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* gnu/packages/python-xyz.scm (python-hy): Update to 0.28.0.
[native-inputs]: Replace python-pytest with python-pytest-next.
Change-Id: I6f465a9c834aea51fd0363ba27f9b0ff7b98e82b
2024-05-11 14:24:49 -03:00
dc03e6ce50
gnu: python-click-default-group: Enable tests.
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* gnu/packages/python-xyz.scm (python-click-default-group) [source]:
Swap to git checkout containing tests.
Change-Id: I51d039ce03d4d772ed6246233e5cc830b5548c3a
2024-05-08 22:30:41 +01:00
09c4818beb
gnu: python-qstylizer: Update to 0.2.3.
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* gnu/packages/python-xyz.scm (python-qstylizer): Update to 0.2.3.
[arguments]: Refresh style.
[propagated-inputs]: Remove python-tinycss; add python-tinycss2.
[native-inputs]: Remove python-pytest-cov, python-pytest-runner, and
python-pytest-xdist.
Change-Id: I99bde105d125053e1316372dfbebf90d4236fcc7
2024-05-08 22:01:47 +01:00
0d7ec97da0
gnu: python-argparse-manpage: Update to 4.5.
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* gnu/packages/python-xyz.scm (python-argparse-manpage): Update to 4.5.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-tomli.
Change-Id: I8151fb0cc79181c1126a1c00288dc3a96134aa70
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-05-08 21:31:33 +01:00
a5fef66b34
gnu: Add python-archspec.
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* gnu/packages/python-xyz.scm (python-archspec): New variable.
Change-Id: Icb15a681d7f339ab25cb0a91feeaacc6a3e8cd6a
2024-05-06 10:37:41 +02:00
1f5eef8391
gnu: Add python-termcolor-1.
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* gnu/packages/python-xyz.scm (python-termcolor-1): New variable.
Change-Id: I1aca97b6b7976cb698131c3a0be73e4798bef6d6
2024-05-05 22:38:17 +02:00
714baf2295
gnu: python-termcolor: Update to 2.4.0.
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* gnu/packages/python-xyz.scm (python-termcolor): Update to 2.4.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add 'fix-pyproject build phase.
[native-inputs]: Add python-hatch-vcs, python-hatchling, python-pytest, and
python-pytest-cov.
Change-Id: I1b824ca6f125305169c3f64f00dbacbeb77d0ed0
2024-05-05 22:38:17 +02:00
9692e2bb7c
gnu: snakemake-5: Patch version string.
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* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'patch-version.
Change-Id: I647625e9d26b2ee06274a0c5bb844ccb87035537
2024-05-05 22:38:17 +02:00
8d14b1cbb6
gnu: snakemake-5: Make compatible with tabulate 0.9.0.
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* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
2024-05-05 22:38:17 +02:00
36a1e76173
gnu: snakemake: Fetch from git repository.
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* gnu/packages/python-xyz.scm (snakemake)[source]: Fetch from git repository
to include tests.
[arguments]: Enable tests; add 'pre-check phase.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add git-minimal, python-wrapper, python-pytest,
python-pandas, and python-requests-mock.
Change-Id: I32e9d36752cc91eacb8f05138d969834dbbce817
2024-05-05 22:38:17 +02:00
6095e5b436
gnu: snakemake-7: Make compatible with tabulate 0.9.0.
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* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: Ie6b2a7d65bc76e3df7c3946ba4533b301f5a3610
2024-05-05 22:38:17 +02:00
6244177e79
gnu: snakemake-6: Make compatible with tabulate 0.9.0.
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* gnu/packages/python-xyz.scm (snakemake-6)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: I0471726e2000af76871e2542ed347cd1727bf0c9
2024-05-05 22:38:17 +02:00
57f265f1ea
gnu: python-dask: Do not reference pyarrow_hotfix.
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* gnu/packages/python-xyz.scm (python-dask)[arguments]: Add 'patch-pyproject
phase.
Change-Id: Idd173b72b1467540c295224072f3740c7f42b0a8
2024-05-05 22:38:17 +02:00
262df6c607
gnu: python-dask: Disable some tests.
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* gnu/packages/python-xyz.scm (python-dask)[arguments]: Disable ORC tests and
those that fail due to differences in job id.
Change-Id: I272a77c8291b121b57b02750916f520b52185bbe
2024-05-05 22:38:17 +02:00
78d5fb1720
gnu: python-dask: Propagate python-dask-expr.
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* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable.
(python-dask)[propagated-inputs]: Add python-dask-expr.
* gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]:
Remove python-dask.
[native-inputs]: Add python-dask/bootstrap.
Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
2024-05-05 22:38:17 +02:00
22eeb8f16e
gnu: python-dask: Disable all tokenize tests.
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* gnu/packages/python-xyz.scm (python-dask)[arguments]: Ignore the test file.
Change-Id: Icbd4845361aa57c493f473ab87a15ade8a20a65f
2024-05-05 22:38:17 +02:00
1295abd0af
Revert "gnu: python-numpy: Update to 1.26.0."
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numba cannot use numpy > 1.24.
This reverts commit 6b8efd211fbd619e80628d2a78f99c6afc18723e.
2024-05-05 22:38:17 +02:00
5450886934
gnu: python-numpy: Update to 1.26.0.
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* gnu/packages/python-xyz.scm (python-numpy): Update to 1.26.0.
[build-system]: Use pyproject-build-system.
[arguments]: Move test flags to #:test-flags; add phase
'use-setuptools-backend.
[native-inputs]: Remove gfortran; add replace python-cython with
python-cython-3; add meson/newer and ninja.
Change-Id: I783bbca58624bf6f047056ba21d838f5ecb09ac2
2024-05-05 22:38:17 +02:00
2a7e513803
gnu: python-tabulate: Enable tests and fix version string.
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* gnu/packages/python-xyz.scm (python-tabulate)[arguments]: Enable tests.
[native-inputs]: Add python-pytest and python-setuptools-scm.
Change-Id: I14073151916fd637d83905c03e76b96c390db917
2024-05-05 22:38:16 +02:00
24bf2329a4
gnu: python-anndata: Update to 0.10.7.
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* gnu/packages/python-xyz.scm (python-anndata): Update to 0.10.7.
[arguments]: Patch conftest.py; adjust tests; remove old patch for version
string; add phase 'set-numba-cache-dir.
[native-inputs]: Add python-awkward, python-dask, python-distributed,
python-hatchling, python-hatch-vcs, python-loompy, python-matplotlib,
python-pytest-doctestplus, and python-pytest-xdist.
[propagated-inputs]: Add python-array-api-compat and python-exceptiongroup.
Change-Id: I3099cbfbb1865743c75d32243be9e5a59df1507d
2024-05-05 22:38:16 +02:00
eb866b3699
gnu: Add python-array-api-compat.
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* gnu/packages/python-xyz.scm (python-array-api-compat): New variable.
Change-Id: Ibfd701630b41f860c7ad4df57fd3624d9c5b7752
2024-05-05 22:38:16 +02:00
a3ff747a48
gnu: Add python-awkward.
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* gnu/packages/python-xyz.scm (python-awkward): New variable.
Change-Id: Ie4f9b12d3662b9029f6e042f9c3a4d547073a6e7
2024-05-05 22:38:16 +02:00
fe780b55b4
gnu: Add python-awkward-cpp.
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* gnu/packages/python-xyz.scm (python-awkward-cpp): New variable.
Change-Id: I68f7e314aa6b575eb7135aa5308c327d5f6bf3ea
2024-05-05 22:38:16 +02:00
cc67370ca1
gnu: python-partd: Update to 1.4.1.
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* gnu/packages/python-xyz.scm (python-partd): Update to 1.4.1.
[propagated-inputs]: Remove python-blosc.
Change-Id: I3aff28899339f9ffaa47b6f5c81e0e68ce660963
2024-05-05 22:38:16 +02:00
dff3357bb6
gnu: python-dask: Update to 2024.4.2.
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* gnu/packages/python-xyz.scm (python-dask): Update to 2024.4.2.
[arguments]: Disable a few tests.
Change-Id: I759ddee2ec49fbf74f368c3313f7215906b0e5a2
2024-05-05 22:38:16 +02:00
fef6edecbc
gnu: python-tables: Update to 3.7.0.
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* gnu/packages/python-xyz.scm (python-tables): Update to 3.7.0.
[propagated-inputs]: Add python-packaging and python-py-cpuinfo.
Change-Id: I8653bef9a07bb898933b249aad92ddb2b79b8d85
2024-05-05 22:38:16 +02:00
9953207f3e
gnu: python-tabulate: Update to 0.9.0.
...
* gnu/packages/python-xyz.scm (python-tabulate): Update to 0.9.0.
[build-system]: Use pyproject-build-system.
Change-Id: If360e5be6433b35308b76bd1284bb6ddb74008e8
2024-05-05 22:38:16 +02:00
6be3c24d82
gnu: python-cython-3: Update to 3.0.8.
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* gnu/packages/python-xyz.scm (python-cython-3): Update to 3.0.8.
Change-Id: I9129a7837cefea0b95b0a3c3cdf73997d91f7484
2024-05-05 22:38:16 +02:00
d1eda517f3
gnu: Add python-param.
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* gnu/packages/python-xyz.scm (python-param): New variable.
Change-Id: Idad928488d7c306c969b4484a3cd22661c41d488
2024-05-05 22:38:15 +02:00
83262c971e
gnu: Add python-multiscale-spatial-image.
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* gnu/packages/python-xyz.scm (python-multiscale-spatial-image): New variable.
Change-Id: I05a0b3a93091148917fade831faefb88c13bbc6f
2024-05-05 22:38:15 +02:00
407fcd510b
gnu: Add python-colorcet.
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* gnu/packages/python-xyz.scm (python-colorcet): New variable.
Change-Id: I8b3f6d9a132d028f56330308b034d263e162f0f9
2024-05-05 22:38:15 +02:00
5f186e2f79
gnu: Add python-pyct.
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* gnu/packages/python-xyz.scm (python-pyct): New variable.
Change-Id: Ia207d5aa9d66fd2bf3616049c042fbb12e50928d
2024-05-05 22:38:15 +02:00
536228e65e
gnu: python-pooch: Update to 1.8.1.
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* gnu/packages/python-xyz.scm (python-pooch): Update to 1.8.1.
[arguments]: Enable tests, but not all of them.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest and python-setuptools-scm.
[propagated-inputs]: Add python-platformdirs; remove python-appdirs and
python-packaging.
Change-Id: I3a0f73db5c0d78c9cee24c73402e9b1e34e26b4a
2024-05-05 22:38:15 +02:00
749cb3c520
gnu: Add python-dask-image.
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* gnu/packages/python-xyz.scm (python-dask-image): New variable.
Change-Id: I77c22bba69d73ce39681064bfdcc05b2b360ea26
2024-05-05 22:38:14 +02:00
7d4d0512a0
gnu: python-exif-read: Update to 3.0.0.
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* gnu/packages/python-xyz.scm (python-exif-read): Update to 3.0.0.
Change-Id: I19e0a19041aa943a9f3ecf262077328d52ef4d1d
2024-04-30 21:36:09 +01:00
fc63020acc
gnu: jube: Update to version 2.6.1.
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* gnu/packages/python-xyz.scm (jube): Update to new version. Add
`python-pyyaml' to `native-inputs'.
Change-Id: I77e1532f069f2f745b4acb575dc3c4a6861a8945
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-04-26 16:52:23 +01:00
17b38b0093
gnu: i3-autotiling: Update to 1.9.1.
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* gnu/packages/python-xyz.scm (i3-autotiling): Update to 1.9.1.
Change-Id: I564e3c53d23830c94eb58465715b1b7809cc74f5
Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-04-26 16:50:46 +01:00
c0c713be66
gnu: python-omegaconf: Fix build system errors.
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* gnu/packages/python-xyz.scm (python-omegaconf)[arguments]: Fix syntax error
in version specification; do not trigger errors on deprecation warnings.
Change-Id: Ida873c11255ffb65d888378cdd77a9205163016a
2024-04-22 11:29:31 +02:00
d6af13222e
gnu: python-pydantic-2: Ignore sensitive tests.
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* gnu/packages/python-xyz.scm (python-pydantic-2)[arguments]: Ignore north
star tests.
Change-Id: Ic305f95f8d1399a4d777dad35fcee9e28f16c907
2024-04-22 11:29:31 +02:00
789286ebd9
gnu: python-zarr: Update to 2.17.2.
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* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.2.
[arguments]: Delete two flaky tests.
Change-Id: I1ab1c90f17d17a03c6cd76bbeb9112df741cc9c6
2024-04-22 11:29:30 +02:00
Efraim Flashner
Artyom V. Poptsov
Sharlatan Hellseher
Giacomo Leidi via Guix-patches via
Vinicius Monego
Dariqq
nafkhamdc
Ricardo Wurmus
Romain GARBAGE
Wilko Meyer