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96122 Commits (4b71cb93038526d9f8a6f6f01a6093262e83b538)

Author SHA1 Message Date
Ricardo Wurmus 4b71cb9303
gnu: r-network: Update to 1.17.2.
* gnu/packages/cran.scm (r-network): Update to 1.17.2.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 29e58b9278
gnu: r-tinytex: Update to 0.39.
* gnu/packages/cran.scm (r-tinytex): Update to 0.39.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus fb302963e4
gnu: r-uuid: Update to 1.1-0.
* gnu/packages/cran.scm (r-uuid): Update to 1.1-0.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus c0d9536403
gnu: r-vctrs: Update to 0.4.1.
* gnu/packages/cran.scm (r-vctrs): Update to 0.4.1.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 9bce612543
gnu: r-xfun: Update to 0.31.
* gnu/packages/cran.scm (r-xfun): Update to 0.31.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 8defafa742
gnu: r-webshot: Update to 0.5.3.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.3.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus c95a8f8488
gnu: r-cli: Update to 3.3.0.
* gnu/packages/cran.scm (r-cli): Update to 3.3.0.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 7bf051be75
gnu: r-venndiagram: Update to 1.7.3.
* gnu/packages/cran.scm (r-venndiagram): Update to 1.7.3.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 83b90cc4a1
gnu: r-hardyweinberg: Update to 1.7.5.
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.5.
2022-05-28 23:18:46 +02:00
Ricardo Wurmus 2ccb1881d4
gnu: r-pdist: Update to 1.2.1.
* gnu/packages/cran.scm (r-pdist): Update to 1.2.1.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 63993ae9e0
gnu: r-broom: Update to 0.8.0.
* gnu/packages/cran.scm (r-broom): Update to 0.8.0.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus a03033dde1
gnu: r-psych: Update to 2.2.5.
* gnu/packages/cran.scm (r-psych): Update to 2.2.5.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus f8f43d685e
gnu: r-geometry: Update to 0.4.6.
* gnu/packages/cran.scm (r-geometry): Update to 0.4.6.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 99206a360f
gnu: r-energy: Update to 1.7-10.
* gnu/packages/cran.scm (r-energy): Update to 1.7-10.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus e5eec206ae
gnu: r-bbmle: Update to 1.0.25.
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.25.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 3651780fc2
gnu: r-extremes: Update to 2.1-2.
* gnu/packages/cran.scm (r-extremes): Update to 2.1-2.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 69d208b4de
gnu: r-rmtstat: Update to 0.3.1.
* gnu/packages/cran.scm (r-rmtstat): Update to 0.3.1.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 8fa3e9f513
gnu: r-sp: Update to 1.4-7.
* gnu/packages/cran.scm (r-sp): Update to 1.4-7.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 9879432da2
gnu: r-restrserve: Update to 1.1.1.
* gnu/packages/cran.scm (r-restrserve): Update to 1.1.1.
[propagated-inputs]: Add r-digest.
2022-05-28 23:18:45 +02:00
Ricardo Wurmus 20cbdd3d2d
gnu: r-reshape: Update to 0.8.9.
* gnu/packages/cran.scm (r-reshape): Update to 0.8.9.
[propagated-inputs]: Remove r-rcpp.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 51bc637839
gnu: r-ff: Update to 4.0.7.
* gnu/packages/cran.scm (r-ff): Update to 4.0.7.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus c02dbd5c80
gnu: r-circlize: Update to 0.4.15.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.15.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 9c33d6688d
gnu: r-rcppxptrutils: Update to 0.1.2.
* gnu/packages/cran.scm (r-rcppxptrutils): Update to 0.1.2.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 30fc048229
gnu: r-ps: Update to 1.7.0.
* gnu/packages/cran.scm (r-ps): Update to 1.7.0.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 3a389207b5
gnu: r-haven: Update to 2.5.0.
* gnu/packages/cran.scm (r-haven): Update to 2.5.0.
[propagated-inputs]: Add r-cli and r-lifecycle.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus dea8ee293e
gnu: r-shinyfiles: Update to 0.9.2.
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.2.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 1baffaf491
gnu: r-rstpm2: Update to 1.5.6.
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.6.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 33756c6ed5
gnu: r-fastghquad: Update to 1.0.1.
* gnu/packages/cran.scm (r-fastghquad): Update to 1.0.1.
2022-05-28 23:18:44 +02:00
Ricardo Wurmus 20739d83a7
gnu: r-vegan: Update to 2.6-2.
* gnu/packages/cran.scm (r-vegan): Update to 2.6-2.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus 5128750299
gnu: r-astsa: Update to 1.15.
* gnu/packages/cran.scm (r-astsa): Update to 1.15.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus d4241d5af6
gnu: r-shadowtext: Update to 0.1.2.
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.2.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus fd8062128b
gnu: r-mboost: Update to 2.9-7.
* gnu/packages/cran.scm (r-mboost): Update to 2.9-7.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus 819d200a0b
gnu: r-polychrome: Update to 1.5.1.
* gnu/packages/cran.scm (r-polychrome): Update to 1.5.1.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus 9d83753c40
gnu: r-scales: Update to 1.2.0.
* gnu/packages/cran.scm (r-scales): Update to 1.2.0.
[propagated-inputs]: Add r-rlang.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus fbac14dd28
gnu: r-zoo: Update to 1.8-10.
* gnu/packages/cran.scm (r-zoo): Update to 1.8-10.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus a075d93dfc
gnu: r-v8: Update to 4.2.0.
* gnu/packages/cran.scm (r-v8): Update to 4.2.0.
2022-05-28 23:18:43 +02:00
Ricardo Wurmus d4e4cf21b8
gnu: r-datawizard: Update to 0.4.1.
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.1.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 32a3b09c51
gnu: r-abn: Update to 2.7-1.
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 3360f14b08
gnu: r-ldheatmap: Update to 1.0-6.
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 3ceaa41e67
gnu: r-wgcna: Update to 1.71.
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus ac12a57b78
gnu: r-activepathways: Update to 1.1.0.
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
2022-05-28 23:18:42 +02:00
Ricardo Wurmus 43e82253c1
gnu: r-with-tests: Update to 4.2.0.
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.0.
[arguments]: Add phase 'patch-tests; add phase 'set-home.
2022-05-28 23:18:42 +02:00
Efraim Flashner 0542905a2c
gnu: wget2: Reindent package.
* gnu/packages/wget.scm (wget2): Reindent package with 'guix style'.
2022-05-28 22:23:32 +03:00
Efraim Flashner 81803c5eaa
gnu: wget2: Update to 2.0.1.
* gnu/packages/wget.scm (wget2): Update to 2.0.1.
[arguments]: Remove trailing #t from phases.
2022-05-28 22:18:40 +03:00
Efraim Flashner 39227724e8
gnu: mesa: Build with llvm on armhf-linux.
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm for all architectures.
[native-inputs]: Add glslang for all architectures.
[arguments]: Adjust configure-flags to give armhf-linux its own
gallium-drivers and enable llvm support. Rewrite portions that no longer
depend on specific architectures to enable flags. Adjust custom
'disable-failing-test phase to skip a test on armhf-linux.
2022-05-28 22:02:36 +03:00
Efraim Flashner 4a53069b38
gnu: clang-from-llvm: Fix build on some architectures.
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Adjust custom
'symlink-cfi_ignorelist phase to only symlink when the file exists.
2022-05-28 22:02:35 +03:00
Liliana Marie Prikler cc0401a9de
gnu: quodlibet: Fix inputs.
* gnu/packages/music.scm (quodlibet)[inputs]: Add bash-minimal for
‘wrap-program’.  Remove extraneous gtk+.
2022-05-28 17:28:39 +02:00
Remco van 't Veer 092ec158f7
gnu: Add quodlibet.
* gnu/packages/music.scm (quodlibet): New variable.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28 13:02:19 +02:00
Liliana Marie Prikler 2a97acbe3d
gnu: emacs-magit: Use directory excursions rather than wild chdir.
* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases]
<build-info-manual, configure-git>: Don't chdir.
<set-magit-version, patch-exec-paths>: Use full file names.
<enter-lisp-directory>: Drop phase.
<expand-load-path, install>: Wrap in directory excursions.
2022-05-28 08:49:41 +02:00
Zhu Zihao 9368341092
gnu: emacs-magit: Drop the libgit backend.
The libgit backend currently provides next to no features, but
demands extra maintenance overhead.  It is in fact not a usable
backend; thus let's not use it.

* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]
<#:emacs>: Drop argument.
<#:exclude>: Add sources related to emacs-libgit.
[inputs]: Remove emacs-libgit.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28 08:34:25 +02:00