Fixes a regression introduced in
938448bf40 whereby
'fork+exec-command/container' would return #t, then used as the running
value of the 'guix-daemon' service in the installer. Upon installation
completion, stopping the 'guix-daemon' service would fail with
wrong-type-arg because that #t would be passed to the 'stop' method in
lieu of a PID.
* gnu/build/shepherd.scm (fork+exec-command/container): Return a PID
rather than #t.
Fixes a regression introduced in
938448bf40 where 'exec-command*' could
get #:directory #f, in particular when called by
'fork+exec-command/container'.
* gnu/build/shepherd.scm (exec-command*): Add default value for #:directory.
* gnu/home/services/shells.scm (home-zsh-service-type): Make zsh related
private functions more consistently named.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
The 'ar' matched the 'ar' in 'aarch64-linux-gnu' to unfun consequences.
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: More
closely match the 'ar' and 'ld' commands when substituting them.
* gnu/packages/patches/efivar-211.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (efivar)[source]<origin>: Use it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes <https://issues.guix.gnu.org/54812>.
Starting with Shepherd 0.9.0 and the use of 'make-inetd-constructor' in
commit 808b9e8504, systems might be
running transient Shepherd services such as those corresponding to SSH
connections. Before this change, 'shepherd-service-upgrade' would have
those transient services in the list of services to unload; concretely,
that would lead all SSH connections to be closed upon 'guix system
reconfigure'.
* gnu/services/shepherd.scm (shepherd-service-upgrade): Remove transient
services to TO-UNLOAD.
* gnu/services/herd.scm (<live-service>)[transient?]: New field.
(current-services): Check the value of 'transient?'. Call
'resolve-transients'.
(resolve-transients): New procedure.
This fixes a regression that was introduced in
27720d0fe1.
* gnu/packages/patches/ganeti-pyyaml-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti)[source](patches): Add it.
Cross-compiling lsof is failing with an "invalid G-expression input"
error. Fix this by using a quoted list.
* gnu/packages/lsof.scm (lsof): Fix invalid G-Expression.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This ensures those programs, if invoked by shepherd (where standard
input is /dev/null), can still interact with the user if needed.
* gnu/build/file-systems.scm (check-ext2-file-system)
(check-bcachefs-file-system, check-btrfs-file-system):
(check-fat-file-system, check-jfs-file-system):
(check-f2fs-file-system, check-ntfs-file-system):
(check-xfs-file-system): Use 'system*/tty' instead of 'system*'.
Fixes <https://issues.guix.gnu.org/54770>.
Regression introduced in 400c9ed3d7.
Previously, for an encrypted /home (say), "cryptsetup open" would be
invoked by shepherd, with /dev/null as its standard input. It would
thus run in non-interactive mode and, instead of asking for a
passphrase, fail with:
Nothing to read on input.
This change ensures it runs in interactive mode.
* gnu/build/file-systems.scm (system*/console, system*/tty): New
procedures.
* gnu/system/mapped-devices.scm (open-luks-device): Use 'system*/tty'
instead of 'system*'.
* gnu/packages/lisp-xyz.scm (sbcl-legit): Update to 1.0.0-2.5f8a2d4 and use
revision variable in let block.
[arguments]: Add 'patch-git-executable' phase.
[inputs]: Add formatting and add missing git input.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 100.
(%chromium-version): Set to 100.0.4896.75.
(%debian-revision): Set to debian/100.0.4896.60-1.
(%ungoogled-origin): Update hash.
(%debian-patches): Updates hashes. Remove obsolete.
(ungoogled-chromium): Update hash.
[arguments]: Remove obsolete substitution. Patch libvulkan.so.1 in more
files, and add absolute reference to Mesa ICDs.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 99.
(%chromium-version): Set to 99.0.4844.84.
(%ungoogled-origin): Update hash.
(ungoogled-chromium): Likewise.
[arguments]: Patch absolute file names to GTK libraries. Patch one more
Opus header inclusion. Remove labels in wrapping phase.
[native-inputs]: Change from CLANG-13 to CLANG-14.
[inputs]: Add AT-SPI2-ATK.
* gnu/packages/llvm.scm (%llvm-monorepo-hashes, %llvm-patches, llvm-monorepo):
New variables.
(clang-runtime-from-llvm): Make HASH optional; use monorepo when not present.
(clang-from-llvm): Likewise.
(llvm-14, clang-runtime-14, clang-14, clang-toolchain-14, lld-14): New variables.
(llvm-13): Inherit from LLVM-14.
(lld-13): Inherit from LLD-14.
(lld): Turn into alias for LLD-14.
* gnu/packages/patches/clang-14.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/zig.scm (zig): Change from LLD to LLD-13.
* gnu/packages/lisp-xyz.scm (sbcl-sxql): Update to 0.1.0-3.cc3478c and use
revision variable in let block.
[inputs]: Add missing sbcl-trivia input.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
This lets the 'childhurd' service start in the background, letting
shepherd perform other tasks in the meantime, including serving
clients (such as the 'herd' command).
* gnu/build/secret-service.scm (with-modules): New macro.
(wait-for-readable-fd): Add cooperative implementation when Fibers is in
use.
(secret-service-send-secrets): Define 'sleep' so that it cooperates when
Fibers is in use.
* gnu/services/ssh.scm (openssh-shepherd-service): Use
'make-inetd-constructor' when it is defined.
(<openssh-configuration>)[max-connections]: New field.
* gnu/tests/ssh.scm (run-ssh-test)["sshd PID"]: Adjust to cope with
PID-FILE being #f.
* gnu/tests/ssh.scm (%test-openssh): Pass #f as the 'pid-file'
argument.
* doc/guix.texi (Networking Services): Document 'max-connections'.
* gnu/home/services/shepherd.scm (<home-shepherd-configuration>)[shepherd]:
Default to SHEPHERD-0.9.
(home-shepherd-configuration-file): Use 'start-in-the-background' when
it is defined.
* gnu/services/shepherd.scm (scm->go): Define 'shepherd&co' and pass it
to 'with-extensions'.
(shepherd-configuration-file): Call 'start-in-the-background' when it is
defined.
(<shepherd-configuration>)[shepherd]: Default to SHEPHERD-0.9.
* gnu/system.scm (hurd-default-essential-services): Use SHEPHERD-0.8.
* gnu/build/shepherd.scm (exec-command*): New procedure, with code
formerly...
(make-forkexec-constructor/container): ... here. Use it.
(fork+exec-command/container): Use 'fork+exec-command' only when
CONTAINER-SUPPORT? is false or PID is the current process.
* gnu/packages/admin.scm (shepherd): Rename to...
(shepherd-0.8): ... this. New variable.
(shepherd): Define as an alias for SHEPHERD-0.8.
(shepherd-0.9): New variable.
(guile2.2-shepherd): Inherit from SHEPHERD-0.9 and adjust inputs
accordingly.
Forbid root user creation as it could lead to a system without any
non-priviledged user accouts.
Fixes: <https://issues.guix.gnu.org/54666>.
* gnu/installer/newt/user.scm (run-user-add-page): Forbid it.
Includes fixes for CVE-2022-1097, CVE-2022-1196, CVE-2022-24713,
CVE-2022-28281, CVE-2022-28282, CVE-2022-28285, CVE-2022-28286, and
CVE-2022-28289.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
[[PGP Signed Part:No public key for 2208D20958C1DEB0 created at 2022-03-28T11:03:48+0200 using RSA]]
* gnu/packages/mail.scm (l2md): Update to 9db252bc.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Current plocate package sets the --sharedstatedir to a store directory, which
causes updatedb and plocate to fail by default since the store is immutable.
This will set the default database path to /var/cache/plocate.db instead.
* gnu/packages/search.scm (plocate): Change build options.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Looks like phodav requires libsoup 2. Example of failing build logs,
wanting libsoup 2.4: <https://ci.guix.gnu.org/build/584454/log/raw>
After swapping the dependency, tests were failing due to HOME not being
writable. I added a new build phase to account for this. I also removed
the start-virtual-dir-server phase which no longer seems required, the
tests pass without it.
* gnu/packages/gnome.scm (phodav): Fix build, tests.
[inputs]: Replace libsoup 3 with libsoup 2.
[arguments]<#:phases>[set-temporary-home]: New phase.
[arguments]<#:phases>[start-virtual-dir-server]: Remove phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/linux.scm (config->string): add a clause handling strings
Allows for the declarative configuration of kconfig options which accept
strings, such as CONFIG_MODULE_SIG_KEY.
I've enclosed the given string in quotes, but don't do any kind of
escaping. See the kernel mailing list for the current state of escaped
strings upstream:
https://patchwork.kernel.org/project/linux-kbuild/patch/1431003982-992-1-git-send-email-sr@denx.de/
Apologies to those with double-quotes or backslashes in their
CONFIG_SYSTEM_*_KEYS.
Signed-off-by: antlers <autumnalantlers@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/wm.scm (xmonad-next)[arguments]: Use #$output, #$name
and #$synopsis instead of %output, name and synopsis.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This is needed since the update of python-loompy.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Rename
'set-PYTHONPATH to 'set-additional-environment-variables and set
NUMBA_CACHE_DIR.
This reverts commit 223a3d7f7f, as it triggered
thousands of rebuilds due to inadvertently touching git-minimal/fixed.
Reported-by: Christopher Baines <mail@cbaines.net>
* gnu/packages.scm (package-unique-version-prefix): New procedure.
* guix/scripts/package.scm (manifest-entry-version-prefix): Use it.
* tests/packages.scm ("package-unique-version-prefix, gcc@8")
("package-unique-version-prefix, grep"): New tests.
* gnu/services/admin.scm (<log-cleanup-configuration>): New record
type.
(log-cleanup-program, log-cleanup-mcron-jobs): New procedures.
(log-cleanup-service-type): New variable.
* doc/guix.texi (Log Rotation): Document it.
* gnu/packages/bioinformatics.scm (smithwaterman)[arguments]: Add
make-flag to use cxx-for-target. Adjust custom 'patch-source and
'build-dynamic phases to use cross toolchain binaries when cross
compiling. Remove trailing #t from phases.
* gnu/packages/crates-io.scm (rust-criterion-0.3): Update to 0.3.5.
[arguments]<cargo-inputs>: Replace rust-approx-0.4 with 0.5,
rust-quickcheck-0.9 with 1.
* gnu/packages/crates-io.scm (rust-ndarray-0.14): New variable.
* gnu/packages/patches/rust-ndarray-0.14-remove-blas-src.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/dav.scm (radicale): Update to 3.1.5.
[source]: tags have a leading "v" now.
[arguments]: disable tests temporarily.
Tested-by: Jonathan Brielmaier <jonathan.brielmaier@web.de>
Fixes a regression introduced by
4935501fd9 that would skip generating
the user's ~/.config/zsh/.zshenv unless both of zshenv and
environment-variables are set in the configuration.
* gnu/home/services/shells.scm (zsh-get-configuration-files):
Generate ~/.config/zsh/.zshenv when only one of zshenv or
environment-variables is specified.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes build failure on non-x86 architectures, and brings cpufrequtils to the
state of the art from 2011.
* gnu/packages/linux.scm (cpufrequtils)[version]: Use git-version.
[source]: Use git-fetch.
* gnu/packages/gnunet.scm (gnunet): Update to 0.16.3.
[arguments]: Enable all the tests that were disabled.
[inputs]: Use new style. [native-inputs]: Add openssl.
[home-page]: Update URL.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/bioinformatics.scm (wfmash)[arguments]: Don't disable
tests. Add custom 'check phase based on upstream's own CI tests.
[native-inputs]: Add samtools.
* gnu/packages/cpp.scm (atomic-queue)[arguments]: In the check phase, run
tests instead of returning a function to run them.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.
* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu/packages/virtualization.scm (spike)[arguments]: Delete the wrap-binary
phase. Add a configure-dtc-path phase that substitutes the absolute path to
dtc.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu/packages/web.scm (anonip): Update to 1.1.0.
[source]: Fetch from git.
[arguments]: Run tests with pytest.
[native-inputs]: Add python-pytest and python-pytest-cov.
Ludovic Courtès
Andrew Tropin
Efraim Flashner
Guillaume Le Vaillant
Leo Famulari
Michael Rohleder
itd
Marius Bakke
Vagrant Cascadian
Vagrant Cascadian
Olivier Dion
Brian Kubisiak
Jonathan Brielmaier
jgart
Malte Frank Gerdes
André A. Gomes
Peter Polidoro
Mathieu Othacehe
Ricardo Wurmus
Hong Li
Mark H Weaver
Liliana Marie Prikler
Attila Lendvai
ykonai
Leo Nikkilä
Felix Gruber
Zhu Zihao
antlers
Imran Iqbal
Daniel Meißner
Greg Hogan
Maxim Cournoyer
Feng Shu
kiasoc5
Mădălin Ionel Patrașcu
Danny Milosavljevic
Brendan Tildesley
Chadwain Holness
Tanguy Le Carrour
Ludovic Courtès
Sébastien Lerique
Raphaël Mélotte via Guix-patches
Christian Gelinek
cage
Collin J. Doering
Arun Isaac