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53813 Commits (4fe01b09ea0b304b963b7fd9f168439ddfb515c1)

Author SHA1 Message Date
Ludovic Courtès 4fe01b09ea
publish: Export 'signed-string'. 
* guix/scripts/publish.scm (signed-string): Export and improve docstring.
* tests/publish.scm ("/*.narinfo")
("/*.narinfo with properly encoded '+' sign"): Adjust accordingly.
 2020-01-16 18:30:57 +01:00
Nicolas Goaziou a2548a3b5e
gnu: Update copyright header. 
* gnu/packages/python-xyz.scm: Update copyright header.
 2020-01-16 18:06:36 +01:00
Tobias Geerinckx-Rice d7df48fad4
gnu: neomutt: Update to 20191207. 
* gnu/packages/mail.scm (neomutt): Update to 20191207.
 2020-01-16 17:32:35 +01:00
Tobias Geerinckx-Rice a8fa39cd08
gnu: lmdb: Update to 0.9.24. 
* gnu/packages/databases.scm (lmdb): Update to 0.9.24.
 2020-01-16 17:32:35 +01:00
Nicolas Goaziou 1b4c5af29c
gnu: asymptote: Fix GUI. 
Fixes bug#39147.

* gnu/packages/plotutils.scm (asymptote)[inputs]: Add missing inputs.
[arguments]: Wrap GUI executable "xasy".
 2020-01-16 17:09:48 +01:00
Nicolas Goaziou 07c8177b88
gnu: Add python-cson. 
* gnu/packages/python-xyz.scm (python-cson): New variable.
 2020-01-16 17:09:48 +01:00
Nicolas Goaziou 602f3b6793
gnu: Add python-speg. 
* gnu/packages/python-xyz.scm (python-speg): New variable.
 2020-01-16 17:09:48 +01:00
zimoun d14e4745b3
repl: Fix '--help' message. 
* guix/scripts/repl.scm: (show-help): Add '--listen' option message.
 2020-01-16 15:27:24 +01:00
zimoun e8728862a1
repl: Add '--load-path' option. 
* guix/scripts/repl.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
 2020-01-16 15:27:24 +01:00
zimoun 3c8396b578
edit: Add '--load-path' option. 
* guix/scripts/edit.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
 2020-01-16 15:27:24 +01:00
zimoun 21f4fbdd84
refresh: Add '--load-path' option. 
* guix/scripts/refresh.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
 2020-01-16 15:27:24 +01:00
zimoun 2d4688c1ea
size: Add '--load-path' option. 
* guix/scripts/size.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
 2020-01-16 15:27:24 +01:00
Pierre Neidhardt ee9a735bc8
graph: Add '--load-path' option. 
* guix/scripts/graph.scm (%option): Add '--load-path' option.
* doc/guix.texi: Document it.
* tests/guix-graph.sh: Test it.
 2020-01-16 15:27:20 +01:00
Christopher Baines ba07842c34
gnu: cuirass: Update to 0.0.1-27.46f73b6. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-27.46f73b6.
 2020-01-16 08:42:59 +00:00
Ricardo Wurmus d1ac643062
gnu: r-variancepartition: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus e8ccb98a08
gnu: r-flowworkspace: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 3f42bd81a5
gnu: r-ropls: Update to 1.18.6. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 516fa945b3
gnu: r-mlinterfaces: Update to 1.66.2. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2.
[propagated-inputs]: Remove r-rda.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus ac9a9c374c
gnu: r-clusterprofiler: Update to 3.14.3. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 99e2a24978
gnu: r-inspect: Update to 1.16.2. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 7a8fcdaccc
gnu: r-regioner: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus f8f181ae41
gnu: r-affycoretools: Update to 1.58.4. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4.
[propagated-inputs]: Add r-glimma.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus d64124df89
gnu: r-delayedarray: Update to 0.12.2. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.2.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus f7b5c1a02f
gnu: r-iranges: Update to 2.20.2. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.2.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus fdf69f1ee0
gnu: r-s4vectors: Update to 0.24.2. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.2.
 2020-01-16 06:53:31 +01:00
Ricardo Wurmus 7241b44ad4
gnu: r-biocstyle: Update to 2.14.4. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.4.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 8ef91aeb25
gnu: r-poibin: Update to 1.5. 
* gnu/packages/cran.scm (r-poibin): Update to 1.5.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 4fac081a49
gnu: r-gdina: Update to 2.7.8. 
* gnu/packages/cran.scm (r-gdina): Update to 2.7.8.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 951e1d4be7
gnu: r-desolve: Update to 1.27.1. 
* gnu/packages/cran.scm (r-desolve): Update to 1.27.1.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus dedbacdc75
gnu: r-parameters: Update to 0.4.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.4.0.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 82ab1f4ca8
gnu: r-umap: Update to 0.2.4.1. 
* gnu/packages/cran.scm (r-umap): Update to 0.2.4.1.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 697e103ad0
gnu: r-batchtools: Update to 0.9.12. 
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.12.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus a0bb0df325
gnu: r-rttf2pt1: Update to 1.3.8. 
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.8.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 4db8ee8b9a
gnu: r-bookdown: Update to 0.17. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.17.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus f324747843
gnu: r-shinyjs: Update to 1.1. 
* gnu/packages/cran.scm (r-shinyjs): Update to 1.1.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 35bbec27cb
gnu: r-future-apply: Update to 1.4.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.4.0.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus c7040fe4ad
gnu: r-tmb: Update to 1.7.16. 
* gnu/packages/cran.scm (r-tmb): Update to 1.7.16.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus c8cf595a31
gnu: r-multcomp: Update to 1.4-12. 
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-12.
 2020-01-16 06:53:30 +01:00
Ricardo Wurmus 707608fdc4
gnu: r-proc: Update to 1.16.1. 
* gnu/packages/cran.scm (r-proc): Update to 1.16.1.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus 5ec991e6f3
gnu: r-sjmisc: Update to 2.8.3. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.3.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus 4a3351e3cd
gnu: r-insight: Update to 0.8.0. 
* gnu/packages/cran.scm (r-insight): Update to 0.8.0.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus 4afe271458
gnu: r-hdf5r: Update to 1.3.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.1.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus 220875e123
gnu: r-fansi: Update to 0.4.1. 
* gnu/packages/cran.scm (r-fansi): Update to 0.4.1.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus b329d5f0b2
gnu: r-bibtex: Update to 0.4.2.2. 
* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.2.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus dc196dfd44
gnu: r-trend: Update to 1.1.2. 
* gnu/packages/cran.scm (r-trend): Update to 1.1.2.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus b3f02e1af5
gnu: r-tinytex: Update to 0.19. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.19.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus b468f073fa
gnu: r-xfun: Update to 0.12. 
* gnu/packages/cran.scm (r-xfun): Update to 0.12.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus 743b12c241
gnu: r-cli: Update to 2.0.1. 
* gnu/packages/cran.scm (r-cli): Update to 2.0.1.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus e8bcca8c1f
gnu: r-ggridges: Update to 0.5.2. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.2.
 2020-01-16 06:53:29 +01:00
Ricardo Wurmus 831e460610
gnu: r-vcd: Update to 1.4-5. 
* gnu/packages/cran.scm (r-vcd): Update to 1.4-5.
 2020-01-16 06:53:29 +01:00