5021f54787
gnu: ncbi-vdb: Update to 2.8.2.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.8.2.
2017-03-16 10:19:25 +01:00
6c4ccf3228
gnu: ngs-sdk: Update to 1.3.0.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.3.0.
2017-03-16 10:18:48 +01:00
0f03c53168
gnu: Add pzstd.
...
* gnu/packages/compression.scm (pzstd): New variable.
2017-03-16 05:44:02 +01:00
f6ac3101ff
gnu: Add zstd.
...
* gnu/packages/compression.scm (zstd): New variable.
2017-03-16 05:44:02 +01:00
9186216268
gnu: python-publicsuffix2: Update to 2.20160818.
...
* gnu/packages/python.scm (python-publicsuffix2): Update to 2.20160818.
2017-03-16 05:44:02 +01:00
192b887a03
gnu: awscli: Update to 1.11.63.
...
* gnu/packages/python.scm (awscli): Update to 1.11.63.
2017-03-16 05:44:01 +01:00
d93985fe22
gnu: python-botocore: Update to 1.5.26.
...
* gnu/packages/python.scm (python-botocore): Update to 1.5.26.
2017-03-16 05:44:01 +01:00
70fc93cb28
gnu: python-ptyprocess: Update to 0.5.1.
...
* gnu/packages/python.scm (python-ptyprocess): Update to 0.5.1.
2017-03-16 05:44:01 +01:00
26a657f06a
gnu: Add prboom-plus.
...
* gnu/packages/games.scm (prboom-plus): New variable.
2017-03-15 23:14:42 -04:00
5b5cf3c765
gnu: Add tftp-hpa.
...
* gnu/packages/networking.scm (tftp-hpa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 18:24:30 -04:00
80a725726d
gnu: guile-next: Update to 2.2.0.
...
* gnu/packages/guile.scm (guile-next): Update to 2.2.0.
2017-03-15 22:59:40 +01:00
dce8ac54b4
gnu: profanity: Make the source URL version-agnostic.
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* gnu/packages/messaging.scm (profanity)[source]: Use (version) in the source
URL.
2017-03-15 17:20:27 -04:00
cf8d068775
gnu: units: Update to 2.14.
...
* gnu/packages/maths.scm (units): Update to 2.14.
2017-03-15 22:19:40 +01:00
3d602acb13
gnu: no-more-secrets: Update to 0.3.2.
...
* gnu/packages/games.scm (no-more-secrets): Update to 0.3.2.
2017-03-15 22:19:40 +01:00
7ea523853c
gnu: mailutils: Update to 3.2.
...
* gnu/packages/mail.scm (mailutils): Update to 3.2.
2017-03-15 22:19:40 +01:00
f38607536e
gnu: Use INSTALL-FILE where appropriate.
...
* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler
INSTALL-FILE for COPY-FILE when invoked with redundant arguments.
* gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity,
edirect, fasttree, rsem, samtools-0.1): Likewise.
* gnu/packages/code.scm (withershins): Likewise.
* gnu/packages/conky.scm (conky): Likewise.
* gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise.
* gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise.
* gnu/packages/engineering.scm (librecad): Likewise.
2017-03-15 22:19:39 +01:00
618e4bfbad
gnu: cryptsetup: Update to 1.7.4.
...
* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.4.
2017-03-15 22:19:39 +01:00
4e128dd582
gnu: man-pages: Update to 4.10.
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* gnu/packages/man.scm (man-pages): Update to 4.10.
[home-page]: Use HTTPS.
2017-03-15 22:19:38 +01:00
a829c6501b
gnu: Add profanity.
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* gnu/packages/messaging.scm (profanity): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
781d3b070c
gnu: Add libstrophe.
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* gnu/packages/messaging.scm (libstrophe): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
13292ee570
gnu: Add libmesode.
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* gnu/packages/messaging.scm (libmesode): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-15 17:17:06 -04:00
9e61d1534a
gnu: bitcoin-core: Update to 0.14.0.
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* gnu/packages/finance.scm (bitcoin-core): Update to 0.14.0.
2017-03-15 15:48:43 -04:00
608e42e7c9
build: Prefer Guile 2.2 over 2.0.
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* configure.ac: In 'GUILE_PKG', prefer 2.2 over 2.0. Remove warning
about 2.2 not being fully supported.
* doc/guix.texi (Requirements): Mention Guile 2.2.x.
2017-03-15 15:19:54 +01:00
13159c68ef
tests: Expect less accurate location info in 2.2.0.
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* tests/guix-system.sh: Work around inaccurate location info in 2.2.0.
2017-03-15 15:19:54 +01:00
a9a0227c01
store: Adjust UTF-8 test to Guile 2.2.
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* tests/store.scm ("current-build-output-port, UTF-8 + garbage"): On
Guile 2.2, expect REPLACEMENT CHARACTER instead of '?'.
2017-03-15 15:19:53 +01:00
70dfdd501a
syscalls: Adjust 'clone' to Guile 2.2.
...
Before that, something like:
(call-with-container
(lambda ()
(match (primitive-fork)
…)))
would hang in 'primitive-fork' as the child process (the one started in
the container) would try to pthread_join the finalization thread in
'stop_finalization_thread' in libguile, not knowing that this thread is
nonexistent.
* guix/build/syscalls.scm (%set-automatic-finalization-enabled?!): New
procedure.
(without-automatic-finalization): New macro.
(clone): Wrap PROC call in 'without-automatic-finalization'.
2017-03-15 15:19:53 +01:00
81a0f1cdf1
zlib: Don't rely on EBADF being ignored by 'fport_close'.
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In 2.2, 'fport_close' no longer swallows EBADF and instead raises a
'system-error' for this. This commit adjusts for 2.2.
* guix/zlib.scm (close-procedure): Remove.
(make-gzip-input-port): Use 'port->fdes' instead of 'fileno'.
Use 'gzclose' instead of 'close-procedure'.
(make-gzip-output-port): Likewise.
* tests/zlib.scm ("compression/decompression pipe"): Don't check whether
PARENT is closed using 'port-closed?'. Instead, use 'seek' on the
underlying FD and check for EBADF.
2017-03-15 15:19:53 +01:00
bc551cf32b
maint: Mention guix-patches@gnu.org in 'HACKING'.
...
Fixes <http://bugs.gnu.org/25899 >.
* HACKING: Mention guix-patches@gnu.org .
2017-03-15 15:19:53 +01:00
bd102157a1
gnu: mariadb: Update to 10.1.22 [fixes CVE-2017-3302 and CVE-2017-3313].
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* gnu/packages/databases.scm (mariadb): Update to 10.1.22.
2017-03-15 15:08:31 +01:00
27bf00e691
gnu: python-waf: Update to 1.9.8.
...
* gnu/packages/python.scm (python-waf, python2-waf): Update to 1.9.8.
[home-page]: Use https.
2017-03-15 13:08:56 +02:00
283234a309
gnu: direnv: Update to 2.11.3.
...
* gnu/packages/shellutils.scm (direnv): Update to 2.11.3.
2017-03-15 03:45:57 +01:00
68c10f31f9
gnu: conky: Update to 1.10.6.
...
* gnu/packages/conky.scm (conky): Update to 1.10.6.
2017-03-15 03:45:56 +01:00
708e76287c
gnu: obs: Update to 18.0.1.
...
* gnu/packages/video.scm (obs): Update to 18.0.1.
2017-03-15 03:45:56 +01:00
17753e6edb
gnu: youtube-dl: Update to 2017.03.15.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.15.
2017-03-15 03:45:55 +01:00
a988cbb766
gnu: stress-make: Fix description.
...
* gnu/packages/debug.scm (stress-make)[description]: Fix typo.
Avoid ambiguous use of ‘in order’.
2017-03-15 03:45:55 +01:00
d540156c69
gnu: znc: Update to 1.6.5.
...
* gnu/packages/messaging.scm (znc): Update to 1.6.5.
2017-03-15 03:43:21 +01:00
6d57723ac8
gnu: grue-hunter: Correctly install documentation.
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* gnu/packages/games.scm (grue-hunter)[arguments]: Install and populate
‘/share/doc/grue-hunter’ as a directory, not a plain file.
2017-03-15 01:10:31 +01:00
b2d748edff
gnu: samtools: End installation phases with truth.
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* gnu/packages/bioinformatics.scm (samtools, samtools-0.1)[arguments]:
Return #T instead of the undefined results of COPY-FILE or INSTALL-FILE.
2017-03-15 01:10:30 +01:00
35dcfed370
gnu: w3m: Update to 0.5.3+git20170102 [security fixes].
...
See 'NEWS' and 'ChangeLog' in the source distribution for more
information about the security-related bug fixes.
* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20170102.
2017-03-14 18:26:28 -04:00
2eab5db300
Revert "gnu: gitolite: Fix shebangs in hooks."
...
This change embedded store references in the shebangs of scripts that
were meant to be copied out of the store. Those scripts would break when
the interpreters expected by the shebangs were garbage collected.
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25966#28 >
This reverts commit d0c16adb19
2017-03-14 18:26:28 -04:00
850edd77f9
pack: Add unit test.
...
* guix/scripts/pack.scm (self-contained-tarball): Add #:tar option.
[build](tar-supports-sort?): New variable. Use it.
* tests/pack.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
2017-03-14 23:18:32 +01:00
36f213fb70
pack: Use maximum compression; use '-n' for gzip.
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* guix/scripts/pack.scm (<compressor>)[tar-option]: Remove.
[command]: New field.
(%compressors): Provide complete commands. Use '-9' or equivalent for
each compressor; use '-n' for gzip.
(self-contained-tarball)[build]: Adjust accordingly.
2017-03-14 23:18:32 +01:00
796d2f2d0b
Revert "gnu: nss: Use 'modify-phases' syntax."
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This reverts commit 87f1c7efc1
2017-03-14 22:29:18 +01:00
031349075a
Revert "gnu: nss, nss-certs: Update to 3.29.3."
...
Hydra failed to build this version. See discussion at
https://lists.gnu.org/archive/html/guix-devel/2017-03/msg00408.html .
This reverts commit 4f3dcdd99b
2017-03-14 22:26:18 +01:00
edda7ebec1
gnu: Add ocaml-ppx-typerep-conv.
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* gnu/packages/ocaml.scm (ocaml-ppx-typerep-conv): New variable.
2017-03-14 22:09:56 +01:00
d2203187fe
gnu: Add ocaml-ppx-let.
...
* gnu/packages/ocaml.scm (ocaml-ppx-let): New variable.
2017-03-14 22:09:50 +01:00
250ac438e7
gnu: Add ocaml-ppx-enumerate.
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* gnu/packages/ocaml.scm (ocaml-ppx-enumerate): New variable.
2017-03-14 22:09:48 +01:00
a43160ee6f
gnu: Add ocaml-ppx-assert.
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* gnu/packages/ocaml.scm (ocaml-ppx-assert): New variable.
2017-03-14 22:09:46 +01:00
651563bd71
gnu: Add ocaml-ppx-here.
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* gnu/packages/ocaml.scm (ocaml-ppx-here): New variable.
2017-03-14 22:09:44 +01:00
14af90cfbd
gnu: Add ocaml-ppx-variants-conv.
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* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): New variable.
2017-03-14 22:09:41 +01:00
Ricardo Wurmus
Tobias Geerinckx-Rice
Kei Kebreau
Gábor Boskovits
Andy Wingo
Leo Famulari
Mekeor Melire
Ludovic Courtès
Marius Bakke
Efraim Flashner
Julien Lepiller