e0268ff2e4
gnu: Add r-getoptlong.
...
* gnu/packages/cran.scm (r-getoptlong): New variable.
2017-08-17 17:26:08 +02:00
d3c67e1b45
gnu: Add r-dendextend.
...
* gnu/packages/cran.scm (r-dendextend): New variable.
2017-08-17 17:26:08 +02:00
0548660420
gnu: Add r-compare.
...
* gnu/packages/cran.scm (r-compare): New variable.
2017-08-17 17:26:08 +02:00
eb60149eee
gnu: Add r-png.
...
* gnu/packages/image.scm (r-png): New variable.
2017-08-17 17:26:08 +02:00
5cc79c9c50
gnu: Add r-powerlaw.
...
* gnu/packages/cran.scm (r-powerlaw): New variable.
2017-08-17 17:25:47 +02:00
2856369fad
gnu: Add r-circlize.
...
* gnu/packages/cran.scm (r-circlize): New variable.
2017-08-17 17:25:47 +02:00
4847a62ea9
gnu: Add r-globaloptions.
...
* gnu/packages/cran.scm (r-globaloptions): New variable.
2017-08-17 17:25:47 +02:00
2bdb5c3f78
gnu: Add r-shape.
...
* gnu/packages/cran.scm (r-shape): New variable.
2017-08-17 17:25:47 +02:00
c69d27db57
gnu: Add r-calibrate.
...
* gnu/packages/cran.scm (r-calibrate): New variable.
2017-08-17 17:25:47 +02:00
33ce12e293
gnu: Add r-auc.
...
* gnu/packages/cran.scm (r-auc): New variable.
2017-08-17 17:25:47 +02:00
4a007ffafe
gnu: Add r-annotationhub.
...
* gnu/packages/bioinformatics.scm (r-annotationhub): New variable.
2017-08-17 17:25:47 +02:00
5f96f30f5d
gnu: Add r-interactivedisplaybase.
...
* gnu/packages/bioinformatics.scm (r-interactivedisplaybase): New variable.
2017-08-17 17:25:46 +02:00
a71fd67175
gnu: american-fuzzy-lop: Update to 2.49b.
...
* gnu/packages/debug.scm (american-fuzzy-lop): Update to 2.49b.
2017-08-17 18:17:00 +03:00
aacefef222
gnu: american-fuzzy-lop: Add support for non-Intel architectures.
...
* gnu/packages/debug.scm (americal-fuzzy-lop): Add qemu target for
non-Intel targets.
[arguments]: On non-Intel systems, add phase to disable non-Intel
architecture warning and remove incompatible binaries.
2017-08-17 18:16:57 +03:00
721e1987d0
gnu: Add mgba.
...
* gnu/packages/games.scm (mgba): New public variable.
2017-08-17 10:56:04 +02:00
a6d05444ab
gnu: cuirass: Update to 0.0.1-7.6f85bc0.
...
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-7.6f85bc0.
[arguments]: Add guile-git and guile-bytestructures to the load path.
[inputs]: Remove git, add guile-git and guile-bytestructures.
2017-08-17 09:12:46 +02:00
e3b861ce38
gnu: python-cython: Update to 0.26.
...
* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.26.
[source]: Remove patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-17 06:46:06 +03:00
d6ef422fe7
gnu: Add fbreader.
...
* gnu/packages/ebook.scm (fbreader): New variable.
2017-08-17 02:00:51 +02:00
84a52639c9
gnu: Add liblinebreak.
...
* gnu/packages/ebook.scm (liblinebreak): New variable.
2017-08-17 01:56:38 +02:00
f73f1f0769
gnu: python-cryptography-vectors: Update to 2.0.3.
...
* gnu/packages/python.scm (python-cryptography-vectors): Update to 2.0.3.
2017-08-16 22:35:11 +02:00
f37995fa20
gnu: python-cryptography: Update to 2.0.3.
...
* gnu/packages/python.scm (python-cryptography): Update to 2.0.3.
2017-08-16 22:35:10 +02:00
f886e7cab1
gnu: limnoria: Update to 2017.08.03.
...
* gnu/packages/irc.scm (limnoria): Update to 2017.08.03.
2017-08-16 22:35:10 +02:00
e2a4c13023
gnu: cbatticon: Update to 1.6.6.
...
* gnu/packages/admin.scm (cbatticon): Update to 1.6.6.
2017-08-16 22:35:10 +02:00
f207984985
gnu: Add gpick.
...
* gnu/packages/image.scm (gpick): New variable.
2017-08-16 21:37:33 +03:00
d0b13d7b9b
gnu: fossil: Update to 2.2.
...
* gnu/packages/version-control.scm (fossil): Update to 2.2.
[source]: Add uri for older versions.
[arguments]: Enable previously disabled test.
2017-08-16 21:37:32 +03:00
ab1bd285db
gnu: connman: Update to 1.35.
...
* gnu/packages/connman.scm (connman): Update to 1.35.
2017-08-16 21:37:29 +03:00
e664200c0c
gnu: Add ltris.
...
* gnu/packages/games.scm (ltris): New variable.
2017-08-16 11:28:12 -04:00
af4db693db
gnu: Add ghc-gitrev.
...
* gnu/packages/haskell.scm (ghc-gitrev): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
e0ca14c7a8
gnu: Add ghc-geniplate-mirror.
...
* gnu/packages/haskell.scm (ghc-geniplate-mirror): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
298af2a8da
gnu: Add ghc-monadplus.
...
* gnu/packages/haskell.scm (ghc-monadplus): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
005a08e3dc
gnu: Add ghc-fail.
...
* gnu/packages/haskell.scm (ghc-fail): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
1eced2a7a8
gnu: Add ghc-edisoncore.
...
* gnu/packages/haskell.scm (ghc-edisoncore): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
212ae09541
gnu: Add ghc-edisonapi.
...
* gnu/packages/haskell.scm (ghc-edisonapi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:39 +02:00
a623fd7fed
gnu: Add ghc-murmur-hash.
...
* gnu/packages/haskell.scm (ghc-murmur-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
ca48a34594
gnu: Add ghc-data-hash.
...
* gnu/packages/haskell.scm (ghc-data-hash): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 17:07:38 +02:00
adcb30642c
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
96f23b62e0
gnu: Add ghc-equivalence.
...
* gnu/packages/haskell.scm (ghc-equivalence): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
3f8b8e731c
gnu: Add ghc-boxes.
...
* gnu/packages/haskell.scm (ghc-boxes): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
be04f8020a
gnu: Add ghc-edit-distance.
...
* gnu/packages/haskell.scm (ghc-edit-distance): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:13 +02:00
867ed9776c
gnu: Add ghc-stmonadtrans.
...
* gnu/packages/haskell.scm (ghc-stmonadtrans): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
f99a57dc28
gnu: Add ghc-strict.
...
* gnu/packages/haskell.scm (ghc-strict): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:12 +02:00
c12562e1e8
gnu: cpphs: Update to 1.20.8.
...
* gnu/packages/haskell.scm (cpphs): Update to 1.20.8.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:53:08 +02:00
2f7966c8e2
gnu: font-google-noto: Use font-build-system.
...
* gnu/packages/fonts.scm (font-google-noto)[build-system]: Use
font-build-system.
[source]: Use url-fetch/zipbomb.
[arguments]: Remove it.
[native-inputs]: Remove it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-08-16 16:18:50 +02:00
d534f3a4d3
gnu: r-mzr: Fix building on aarch64 and armhf.
...
* gnu/packages/bioinformatics.scm (r-mzr)[inputs]: Add boost.
2017-08-16 12:36:25 +03:00
953a12fa9b
gnu: hdf4: Fix building on aarch64.
...
* gnu/packages/maths.scm (hdf4)[arguments]: Add a phase to improve
detection and support for aarch64-linux.
2017-08-16 09:33:11 +03:00
8343d373d5
gnu: cgit: Don't build cgit's special 'git:src' input.
...
This special version of Git is only used within the build process of
cgit. We don't need to build it otherwise, so the package is removed
with this commit.
* gnu/packages/version-control.scm (cgit)[inputs]: Replace the git@2.10
package with an origin reference of the source code.
(git@2.10 ): Remove variable.
2017-08-15 17:59:22 -04:00
6230e155af
gnu: Fix memcached service startup.
...
Memcached changes to the memcached user from root before writing the PID
file. This means that it must be able to write the PID file as the memcached
user.
To make this work, create the /var/run/memcached directory when the service
starts, make it owned by memcached, and change memcached to write the PID file
to /var/run/memcached/pid.
This wasn't picked up by the system test as the "service running" part was too
permissive, and only failed on an error. Instead, test the response from
calling start-service and check that the PID is a number.
* gnu/services/databases.scm (memcached-activation): New variable.
(memcached-shepherd-service): Change PID file location.
(memcached-service-type): Extend the activation-service-type.
* gnu/tests/databases.scm (run-memcached-test)[test]: Change the "service
running" test to check the response from the shepherd.
2017-08-15 22:24:15 +01:00
2434f5cedf
gnu: Add dssi.
...
* gnu/packages/music.scm (dssi): New variable.
2017-08-15 20:58:03 +02:00
425d66f7a7
gnu: Add emacs-highlight-symbol.
...
* gnu/packages/emacs.scm (emacs-highlight-symbol): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:52:58 +02:00
be69176bbd
gnu: fish-guix: Use new download URL.
...
* gnu/packages/shells.scm (fish-guix)[source]: Adjust the download URL.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-15 20:41:23 +02:00
dca82aefbc
gnu: p11-kit: Update to 0.23.8.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.8.
2017-08-15 20:38:02 +02:00
6550e5ad64
gnu: signify: Update to 22.
...
* gnu/packages/crypto.scm (signify): Update to 22.
2017-08-15 13:27:30 -04:00
06f31e50b1
gnu: diamond: Update to 0.9.10.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.10.
2017-08-15 18:49:33 +10:00
3837108e40
gnu: bcftools: Fix building on aarch64.
...
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: New file.
* gnu/packages/bioinformatics.scm (bcftools)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-15 10:31:20 +03:00
2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
...
This FTBFS on x86_64 and i686.
This reverts commit f4c808df5b
2017-08-15 10:03:40 +03:00
14f366e58d
gnu: youtube-dl: Update to 2017.08.13.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.13.
2017-08-15 01:42:49 +02:00
f28fea1ca7
gnu: e2fsprogs: Update to 1.43.5.
...
* gnu/packages/patches/e2fsprogs-32bit-quota-warnings.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
[source]: Use patch.
2017-08-15 01:08:01 +02:00
15428168ea
gnu: cvs: Fix CVE-2017-12836.
...
* gnu/packages/patches/cvs-2017-12836.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/version-control.scm (cvs)[source]: Use it.
2017-08-14 15:55:31 -04:00
36bfcf7e3a
gnu: git@2.10: Update to 2.10.4 [fixes CVE-2017-1000117].
...
...also disable tests, since they broke after c9f4f56b24git@2.10 ): Update to 2.10.4.
[arguments]: New field.
2017-08-14 21:44:24 +02:00
2bccf1c0ec
gnu: gcc@7: Update to 7.2.0.
...
* gnu/packages/gcc.scm (gcc@7): Update to 7.2.0.
[source]: Switch to xz compression.
2017-08-14 22:30:07 +03:00
a547a6d560
Revert "gnu: e2fsprogs: Update to 1.43.5."
...
Fails to build on i686:
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00118.html >
This reverts commit 3ddaa7922b
2017-08-14 21:22:12 +02:00
1faf081b47
gnu: milkytracker: Update to 1.01.00.
...
* gnu/packages/music.scm (milkytracker): Update to 1.01.00.
2017-08-14 14:26:15 -04:00
9634804890
gnu: Add bismark.
...
* gnu/packages/bioinformatics.scm (bismark): New variable.
2017-08-14 12:00:56 +02:00
86763fdd70
gnu: Add r-dexseq.
...
* gnu/packages/bioinformatics.scm (r-dexseq): New variable.
2017-08-14 12:00:51 +02:00
233f4f43bf
gnu: Add perl-math-random-secure.
...
* gnu/packages/crypto.scm (perl-math-random-secure): New variable.
2017-08-14 11:50:42 +02:00
2023b79f59
gnu: Add perl-crypt-random-source.
...
* gnu/packages/crypto.scm (perl-crypt-random-source): New variable.
2017-08-14 11:50:13 +02:00
2bdc07c2a5
gnu: Add perl-type-tiny.
...
* gnu/packages/perl.scm (perl-type-tiny): New variable.
2017-08-14 11:46:23 +02:00
a0eb3104a9
gnu: Add perl-ref-util-xs.
...
* gnu/packages/perl.scm (perl-ref-util-xs): New variable.
2017-08-14 11:46:14 +02:00
44d37e43fe
gnu: Add perl-regexp-util.
...
* gnu/packages/perl.scm (perl-regexp-util): New variable.
2017-08-14 11:46:04 +02:00
413dd21084
gnu: Add perl-type-tie.
...
* gnu/packages/perl.scm (perl-type-tie): New variable.
2017-08-14 11:45:56 +02:00
649238cbc7
gnu: Add perl-math-random-isaac.
...
* gnu/packages/crypto.scm (perl-math-random-isaac): New variable.
2017-08-14 11:45:20 +02:00
d96e162aa9
gnu: Add perl-math-random-isaac-xs.
...
* gnu/packages/crypto.scm (perl-math-random-isaac-xs): New variable.
2017-08-14 11:44:15 +02:00
2fa2179135
gnu: Add perl-hash-fieldhash.
...
* gnu/packages/perl.scm (perl-hash-fieldhash): New variable.
2017-08-14 11:37:08 +02:00
28fd275caf
gnu: arandr: Use absolute path for xrandr.
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* gnu/packages/xdisorg.scm (arandr)[arguments]: Add configure phase.
2017-08-14 10:01:40 +02:00
9031d26aeb
gnu: linux-libre: Update to 4.12.7.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.7.
(%linux-libre-hash): Update hash.
2017-08-14 03:33:09 -04:00
e96b4378a2
gnu: linux-libre@4.9: Update to 4.9.43.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.43.
2017-08-14 03:32:26 -04:00
7aee6a311b
gnu: linux-libre@4.4: Update to 4.4.82.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.82.
2017-08-14 03:31:29 -04:00
3bfa7af417
gnu: libreoffice: Install .desktop files.
...
* gnu/packages/libreoffice.scm (libreoffice): Add phase to install .desktop
files to $out/share so that LibreOffice will show up in Gnome/KDE/etc and so
that it is associated with the various MIME types of interest.
2017-08-14 09:11:22 +02:00
ac2ddcc66f
gnu: wxmaxima: Update to 17.05.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.1.
[arguments]: Put "autoconf" phase after the "unpack" phase. Fix
indentation.
2017-08-13 18:18:27 -04:00
be6e2c3018
gnu: Update open-adventure to d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.
...
* gnu/packages/games.scm (open-adventure): Update to
d43854f0f6bb8e9eea7fbce80348150e7e7fc34d.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:39:47 -04:00
05af41a181
gnu: linenoise: Update to commit 2105ce445821381cf1bca87b6d386d4ea88ee20d.
...
* gnu/packages/shells.scm (linenoise): Update to commit
2105ce445821381cf1bca87b6d386d4ea88ee20d. Fix indentation.
[source]: change to git.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-08-13 15:29:45 -04:00
f152208b0d
gnu: qemu: Fix CVE-2017-{10664,10806,10911,11434}.
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* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-13 18:28:27 +02:00
d5daf6fbe0
gnu: curl: Fix i686 test failure.
...
* gnu/packages/patches/curl-bounds-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/curl.scm (curl-7.55.0)[source]: Use it.
2017-08-13 16:46:41 +02:00
9766082045
gnu: imagemagick: Update to 6.9.9-7.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-7.
2017-08-13 15:14:03 +02:00
f7e8302b4e
gnu: Add emacs-nix-mode.
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* gnu/packages/emacs.scm (emacs-nix-mode): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-13 13:20:30 +05:30
f4c808df5b
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-13 10:16:17 +03:00
06465d2ba4
gnu: Add mpd service.
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* doc/guix.texi: Add documentation.
* gnu/services/audio.scm (<mpd-configuration>): New record type.
(mpd-service-type): New service type.
* gnu/tests/audio.scm: New file.
* gnu/local.mk: Add new files.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-13 07:36:32 +01:00
c0761f2e7e
gnu: moreutils: Add more inputs to moreutils.
...
The included ts command requires the Time::Duration and Date::Parse perl
modules for the -r option.
* gnu/packages/moreutils.scm (moreutils)[inputs]: Add perl-timedate and
perl-time-duration.
[arguments]: Wrap ts with PERL5LIB.
2017-08-12 22:09:50 +01:00
861fd04baf
gnu: efl: Don't include gtk+@3 in enclosure.
...
* gnu/packages/enlightenment.scm (efl)[propagated-inputs]: Replace
libinput with libinput-minimal.
2017-08-12 23:10:38 +03:00
9be481f8b9
gnu: efl: Update to 1.20.2.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.2.
2017-08-12 23:10:36 +03:00
f814379463
gnu: linux-libre: Update to 4.12.6.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.6.
(%linux-libre-hash): Update hash.
2017-08-12 15:52:29 -04:00
5a8fc7de66
gnu: linux-libre@4.9: Update to 4.9.42.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.42.
2017-08-12 15:51:47 -04:00
7d7c84a7bf
gnu: linux-libre@4.4: Update to 4.4.81.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.81.
2017-08-12 15:51:00 -04:00
462ae6f612
gnu: python-pylint: Use Python2 variant system.
...
* gnu/packages/python.scm (python-pylint): Use Python2 variant system.
(python2-pylint): Strip Python2 variant system.
2017-08-12 16:30:16 +02:00
bfcdf88760
gnu: catdoc: Fix CVE-2017-11110.
...
* gnu/packages/patches/catdoc-CVE-2017-11110.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/textutils.scm (catdoc)[source]: Use it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-08-12 15:30:23 +02:00
3ddaa7922b
gnu: e2fsprogs: Update to 1.43.5.
...
* gnu/packages/linux.scm (e2fsprogs): Update to 1.43.5.
2017-08-12 14:07:41 +02:00
f1f2da6bce
gnu: feh: Update to 2.19.2.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.19.2.
2017-08-12 13:59:14 +02:00
3f09b46d93
gnu: dub: Update to 1.4.1.
...
* gnu/packages/ldc.scm (dub): Update to 1.4.1.
2017-08-11 16:46:00 +02:00
f7fc9667b2
gnu: Add cloc.
...
* gnu/packages/code.scm (cloc): New public variable.
2017-08-11 10:38:30 +02:00
d373c16f33
gnu: imagemagick: Update to 6.9.9-5.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-5.
2017-08-10 20:12:47 -04:00
1c865bfce5
gnu: mksh: Update to 56.
...
* gnu/packages/shells.scm (mksh): Update to 56.
2017-08-11 01:02:12 +02:00
eec0c587af
gnu: ruby-debug-inspector: Update to 0.0.3.
...
* gnu/packages/ruby.scm (ruby-debug-inspector): Update to 0.0.3.
2017-08-11 00:21:00 +02:00
c3b36fa161
gnu: ruby-listen: Update to 3.1.5.
...
* gnu/packages/ruby.scm (ruby-listen): Update to 3.1.5.
2017-08-11 00:20:59 +02:00
98ff58a53d
gnu: ruby-introspection: Update to 0.0.4.
...
* gnu/packages/ruby.scm (ruby-introspection): Update to 0.0.4.
2017-08-11 00:20:59 +02:00
a88f24d860
gnu: ruby-simplecov-html: Update to 0.10.1.
...
* gnu/packages/ruby.scm (ruby-simplecov-html): Update to 0.10.1.
2017-08-11 00:20:58 +02:00
ba074a85d0
gnu: ruby-net-http-digest-auth: Update to 1.4.1.
...
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): Update to 1.4.1.
2017-08-11 00:20:57 +02:00
12313cd071
gnu: ruby-nenv: Update to 0.3.0.
...
* gnu/packages/ruby.scm (ruby-nenv): Update to 0.3.0.
2017-08-11 00:20:57 +02:00
aeb4e61e75
gnu: ruby-rjb: Update to 1.5.5.
...
* gnu/packages/ruby.scm (ruby-rjb): Update to 1.5.5.
2017-08-11 00:20:56 +02:00
acbc506218
gnu: ruby-libxml: Update to 3.0.0.
...
* gnu/packages/ruby.scm (ruby-libxml): Update to 3.0.0.
2017-08-11 00:20:55 +02:00
6f9652b0a1
gnu: ruby-minitest-bacon: Update to 1.0.3.
...
* gnu/packages/ruby.scm (ruby-minitest-bacon): Update to 1.0.3.
2017-08-11 00:20:55 +02:00
fbefd6ffbf
gnu: ruby-tins: Update to 1.15.0.
...
* gnu/packages/ruby.scm (ruby-tins): Update to 1.15.0.
2017-08-11 00:20:54 +02:00
ceaff59ec7
gnu: ruby-git: Update to 1.3.0.
...
* gnu/packages/ruby.scm (ruby-git): Update to 1.3.0.
2017-08-11 00:20:53 +02:00
c9e261b7eb
gnu: ruby-minitest-bonus-assertions: Update to 3.0.
...
* gnu/packages/ruby.scm (ruby-minitest-bonus-assertions): Update to 3.0.
2017-08-11 00:20:52 +02:00
d21c6686d0
gnu: ruby-minitest-hooks: Update to 1.4.1.
...
* gnu/packages/ruby.scm (ruby-minitest-hooks): Update to 1.4.1.
2017-08-11 00:20:52 +02:00
d74d96e466
gnu: ruby-test-unit: Update to 3.2.5.
...
* gnu/packages/ruby.scm (ruby-test-unit): Update to 3.2.5.
2017-08-11 00:20:51 +02:00
2e8cd8624d
gnu: ruby-thor: Update to 0.19.4.
...
* gnu/packages/ruby.scm (ruby-thor): Update to 0.19.4.
2017-08-11 00:20:50 +02:00
1d60c436aa
gnu: ruby-packnga: Update to 1.0.4.
...
* gnu/packages/ruby.scm (ruby-packnga): Update to 1.0.4.
2017-08-11 00:20:50 +02:00
e32dfb7405
gnu: ruby-lumberjack: Update to 1.0.12.
...
* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.12.
2017-08-11 00:20:49 +02:00
185ea4465d
gnu: ruby-net-http-persistent: Update to 3.0.0.
...
* gnu/packages/ruby.scm (ruby-net-http-persistent): Update to 3.0.0.
2017-08-11 00:20:48 +02:00
04de0cb5a0
gnu: ruby-mail: Update to 2.6.6.
...
* gnu/packages/ruby.scm (ruby-mail): Update to 2.6.6.
2017-08-11 00:20:48 +02:00
263c0dbf00
gnu: ruby-ox: Update to 2.6.0.
...
* gnu/packages/ruby.scm (ruby-ox): Update to 2.6.0.
2017-08-11 00:20:47 +02:00
2a91494ed1
gnu: ruby-redcloth: Update to 4.3.2.
...
* gnu/packages/ruby.scm (ruby-redcloth): Update to 4.3.2.
2017-08-11 00:20:46 +02:00
a3179a7338
gnu: ruby-connection-pool: Update to 2.2.1.
...
* gnu/packages/ruby.scm (ruby-connection-pool): Update to 2.2.1.
2017-08-11 00:20:46 +02:00
56822223c1
gnu: ruby-fivemat: Update to 1.3.5.
...
* gnu/packages/ruby.scm (ruby-fivemat): Update to 1.3.5.
2017-08-11 00:20:45 +02:00
8d10918a43
gnu: ruby-daemons: Update to 1.2.4.
...
* gnu/packages/ruby.scm (ruby-daemons): Update to 1.2.4.
2017-08-11 00:20:44 +02:00
e2fcef3913
gnu: ruby-diff-lcs: Update to 1.3.
...
* gnu/packages/ruby.scm (ruby-diff-lcs): Update to 1.3.
2017-08-11 00:20:44 +02:00
313dd5ddc0
gnu: ruby-thread-safe: Update to 0.3.6.
...
* gnu/packages/ruby.scm (ruby-thread-safe): Update to 0.3.6.
2017-08-11 00:20:43 +02:00
884a80dd0a
gnu: ruby-pkg-config: Update to 1.2.5.
...
* gnu/packages/ruby.scm (ruby-pkg-config): Update to 1.2.5.
2017-08-11 00:20:43 +02:00
30caad5080
gnu: ruby-eventmachine: Update to 1.2.5.
...
* gnu/packages/ruby.scm (ruby-eventmachine): Update to 1.2.5.
2017-08-11 00:20:42 +02:00
f3a6311af4
gnu: ruby-term-ansicolor: Update to 1.6.0.
...
* gnu/packages/ruby.scm (ruby-term-ansicolor): Update to 1.6.0.
2017-08-11 00:20:41 +02:00
0cd7b8164d
gnu: ruby-rake-compiler: Update to 1.0.4.
...
* gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.4.
2017-08-11 00:20:40 +02:00
3b0e45c86d
gnu: ruby-useragent: Update to 0.16.8.
...
* gnu/packages/ruby.scm (ruby-useragent): Update to 0.16.8.
2017-08-11 00:20:40 +02:00
5620bd456f
gnu: ruby-domain-name: Update to 0.5.20170404.
...
* gnu/packages/ruby.scm (ruby-domain-name): Update to 0.5.20170404.
2017-08-11 00:20:39 +02:00
a7ca218cd5
gnu: ruby-notiffany: Update to 0.1.1.
...
* gnu/packages/ruby.scm (ruby-notiffany): Update to 0.1.1.
2017-08-11 00:20:39 +02:00
d5489a618d
gnu: ruby-byebug: Update to 9.0.6.
...
* gnu/packages/ruby.scm (ruby-byebug): Update to 9.0.6.
2017-08-11 00:20:38 +02:00
65a7f09ce0
gnu: ruby-sequel: Update to 4.49.0.
...
* gnu/packages/ruby.scm (ruby-sequel): Update to 4.49.0.
2017-08-11 00:20:38 +02:00
d1c1f36803
gnu: ruby-shoulda-matchers: Update to 3.1.2.
...
* gnu/packages/ruby.scm (ruby-shoulda-matchers): Update to 3.1.2.
2017-08-11 00:20:37 +02:00
8e5ff25042
gnu: ruby-arel: Update to 8.0.0.
...
* gnu/packages/ruby.scm (ruby-arel): Update to 8.0.0.
2017-08-11 00:20:37 +02:00
56ccada3c1
gnu: ruby-rb-fsevent: Update to 0.10.2.
...
* gnu/packages/ruby.scm (ruby-rb-fsevent): Update to 0.10.2.
2017-08-11 00:20:36 +02:00
cd698b6e20
gnu: ruby-utils: Update to 0.9.0.
...
* gnu/packages/ruby.scm (ruby-utils): Update to 0.9.0.
2017-08-11 00:20:35 +02:00
e322222ab4
gnu: ruby-tzinfo: Update to 1.2.3.
...
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.3.
2017-08-11 00:20:35 +02:00
32bbfea811
gnu: ruby-rb-inotify: Update to 0.9.10.
...
* gnu/packages/ruby.scm (ruby-rb-inotify): Update to 0.9.10.
2017-08-11 00:20:34 +02:00
8929f0a481
gnu: ruby-gherkin: Update to 4.1.3.
...
* gnu/packages/ruby.scm (ruby-gherkin): Update to 4.1.3.
2017-08-11 00:20:33 +02:00
3d4a5eb555
gnu: ruby-timecop: Update to 0.9.1.
...
* gnu/packages/ruby.scm (ruby-timecop): Update to 0.9.1.
2017-08-11 00:20:33 +02:00
483846ac6f
gnu: ruby-minitest: Update to 5.10.3.
...
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.3.
2017-08-11 00:20:32 +02:00
5ca48923f5
gnu: ruby-redcarpet: Update to 3.4.0.
...
* gnu/packages/ruby.scm (ruby-redcarpet): Update to 3.4.0.
2017-08-11 00:20:32 +02:00
dc97df2ef4
gnu: ruby-cucumber-core: Update to 2.0.0.
...
* gnu/packages/ruby.scm (ruby-cucumber-core): Update to 2.0.0.
2017-08-11 00:20:31 +02:00
ce5f523001
gnu: ruby-pg: Update to 0.21.0.
...
* gnu/packages/ruby.scm (ruby-pg): Update to 0.21.0.
2017-08-11 00:20:30 +02:00
d14e5eaa19
gnu: ruby-slop: Update to 4.5.0.
...
* gnu/packages/ruby.scm (ruby-slop): Update to 4.5.0.
2017-08-11 00:20:29 +02:00
c2f93e9c07
gnu: openjpeg: Update to 2.2.0 [security fixes].
...
In addition to the patches we already had (which are not mentioned in the
ChangeLog, but verified by following their respective GitHub issues) this
release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158,
CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628.
See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md > for details.
* gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch,
gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/image.scm (openjpeg): Update to 2.2.0.
[source](patches): Remove.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch
hard-coded openjpeg-2.1 path.
2017-08-10 22:23:31 +02:00
1a1558e88f
gnu: postgresql: Update to 9.6.4 [fixes CVE-2017-{7546,7547,7548}].
...
See <https://www.postgresql.org/about/news/1772/ > for more information.
* gnu/packages/databases.scm (postgresql): Update to 9.6.4.
2017-08-10 22:23:31 +02:00
1e07daa27a
gnu: mercurial: Update to 4.2.3 [fixes CVE-2017-1000116].
...
* gnu/packages/version-control.scm (mercurial): Update to 4.2.3.
2017-08-10 15:02:04 -04:00
38f8a882ab
gnu: git: Update to 2.14.1 [fixes CVE-2017-1000117].
...
* gnu/packages/version-control.scm (git): Update to 2.14.1.
2017-08-10 15:02:04 -04:00
5993f7c455
gnu: subversion: Update to 1.8.19 [fixes CVE-2017-9800].
...
* gnu/packages/version-control.scm (subversion): Update to 1.8.19.
[source]: Add alternate URL.
2017-08-10 15:02:04 -04:00
f262f44683
gnu: Add emacs-engine-mode.
...
* gnu/packages/emacs.scm (emacs-engine-mode): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 22:25:25 +05:30
783daa4982
gnu: libsoup: Update to 2.58.2 (fixes CVE-2017-2885).
...
* gnu/packages/gnome.scm (libsoup): Update to 2.58.2.
2017-08-10 12:25:31 -04:00
ddde3f6be1
gnu: catimg: Update to 2.4.0.
...
* gnu/packages/image-viewers.scm (catimg): Update to 2.4.0.
2017-08-10 17:26:08 +02:00
226685faa5
gnu: cppcheck: Update to 1.80.
...
* gnu/packages/check.scm (cppcheck): Update to 1.80.
2017-08-10 17:26:07 +02:00
c63b83a40f
gnu: vdirsyncer: Update to 0.16.1.
...
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.1.
2017-08-10 17:26:07 +02:00
37b08547e4
gnu: ruby-bio-commandeer: Update to 0.4.0.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.4.0.
2017-08-10 22:20:38 +10:00
27feda65e7
gnu: Add emacs-erc-hl-nicks.
...
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:55:09 +05:30
1ee879e967
gnu: Add emacs-gitpatch.
...
By the way, “gitpatch.el” says different version than release tarball.
Do I need to ask a developer?
--8<---------------cut here---------------start------------->8---
;; Author: Feng Shu <tumashu@163.com>
;; Homepage: https://github.com/tumashu/gitpatch
;; Keywords: convenience
;; Package-Requires: ((emacs "24.3"))
;; Version: 0.10
--8<---------------cut here---------------end--------------->8---
>From 9eddf07fa401468738c2f48a25e51ddef2a3ceed Mon Sep 17 00:00:00 2001
From: Oleg Pykhalov <go.wigust@gmail.com>
Date: Sat, 29 Jul 2017 14:22:48 +0300
Subject: [PATCH] gnu: Add emacs-gitpatch.
* gnu/packages/emacs.scm (emacs-gitpatch): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 14:37:17 +05:30
a88adeb343
gnu: Add emacs-git-messenger.
...
gnu/packages/emacs.scm (emacs-git-messenger): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-10 13:27:05 +05:30
1012056625
services: admin: Simplify the handling of the Tailon debug? option.
...
* gnu/services/admin.scm (tailon-configuration-file-compiler): Simplify the
handling of debug?.
2017-08-09 23:50:35 +01:00
91fdc8a574
services: Update the Tailon service for Tailon 1.3.0.
...
Tailon 1.3.0 (upgraded from 1.1.1) adds support for HTTP authentication.
* gnu/services/admin.scm (<tailon-configuration-file>): Add http-auth and
users configuration values.
(tailon-configuration-file-http-auth, tailon-configuration-file-users): New
procedures.
(tailon-configuration-file-compiler): Add support for the http-auth and
users configuration options.
* doc/guix.texi (Monitoring Services): Document authentication for Tailon.
2017-08-09 23:50:31 +01:00
f2d8e7f720
services: Add missing wrap-lines option to tailon.
...
* gnu/services/admin.scm (<tailon-configuration-file>): Add wrap-lines.
(tailon-configuration-wrap-lines): New procedure.
(tailon-configuration-file-compiler): Add support for wrap-lines.
* doc/guix.texi (Monitoring Services): Document the wrap-lines Tailon
configuration option.
2017-08-09 23:50:27 +01:00
761f5865c8
gnu: Update tailon to version 1.3.0.
...
From version 1.1.1.
* gnu/packages/logging.scm (tailon)[version]: Change to 1.3.0.
[inputs]: Add python-tornado-http-auth.
2017-08-09 23:50:23 +01:00
c795bc79d9
gnu: Add python-tornado-http-auth.
...
* gnu/packages/python.scm (python-tornado-http-auth): New variable.
2017-08-09 23:50:10 +01:00
4c6c683862
gnu: nmap: Update to 7.60.
...
* gnu/packages/admin.scm (nmap): Update to 7.60.
2017-08-10 00:15:35 +02:00
79d9525071
gnu: curl: Update replacement to 7.55.0. [security fixes]
...
Fixes CVE-2017-1000099, CVE-2017-1000100, and CVE-2017-100101.
See <https://curl.haxx.se/docs/security.html > for details.
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.55.0.
(curl-7.54.1): Rename to ...
(curl-7.55.0): ... this.
[source]: Update source URI to match upstream compression method change.
[arguments]: Add 'fix-Makefile' phase.
2017-08-10 00:15:35 +02:00
2e8c61fcf0
gnu: samba: Update to 4.6.7.
...
* gnu/packages/samba.scm (samba): Update to 4.6.7.
2017-08-10 00:15:34 +02:00
ae7f246cf1
gnu: python-nbformat: Update to 4.3.0.
...
* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0.
2017-08-09 16:52:51 -04:00
10756b9ed1
gnu: gnupg: Update to 2.1.23.
...
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23.
[arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now
the default.
2017-08-09 16:01:33 -04:00
1b22ecdac4
gnu: r-wgcna: Update to 1.61.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61.
[propagated-inputs]: Add r-rcpp, r-robust, r-survival.
2017-08-09 20:08:13 +02:00
c5f744a68d
gnu: Add r-robust.
...
* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
5d0afe8849
gnu: Add r-fit-models.
...
* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
0bae5fd6a7
gnu: Add r-rrcov.
...
* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
23841b2573
gnu: Add r-pcapp.
...
* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
0ecd065839
gnu: r-gdtools: Update to 0.1.5.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
...
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
ea0277abcd
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802,
CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for
CVE-2017-7779.
2017-08-09 13:16:52 -04:00
12025fb9b0
gnu: icecat: Rename patches to reflect CVE assignments.
...
Document that our existing patches include fixes for CVE-2017-7753,
CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792,
CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23
changesets for CVE-2017-7779.
* gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE
assignments.
2017-08-09 13:16:43 -04:00
28e12d6c81
gnu: gnurl: Update to 7.55.0.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-08-09 18:16:51 +02:00
a4afc536f9
gnu: virt-manager: Update to 1.4.2.
...
* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2.
2017-08-09 16:45:32 +02:00
448052b713
gnu: libgdata: Disable failing tests.
...
* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’
phase.
2017-08-09 16:31:06 +02:00
18f5d2a70a
gnu: Add reference to (gnu packages graph).
...
This is a follow-up to 1738138cb3
2017-08-09 15:43:35 +02:00
1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
...
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
31476df32e
gnu: Add python-igraph.
...
* gnu/packages/graph.scm (python-igraph): New variable.
2017-08-09 14:47:47 +02:00
e57fffad90
gnu: Add igraph.
...
* gnu/packages/graph.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-08-09 14:47:47 +02:00
ea77385c4c
gnu: viewnior: Don't build icon-theme.cache.
...
* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to
disable building the icon-theme.cache.
2017-08-09 14:09:43 +03:00
2d5bf32b8a
gnu: googletest: Build shared libraries.
...
* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON"
in #:configure-flags.
2017-08-09 13:53:29 +03:00
c608fe8cf3
gnu: Add ois.
...
* gnu/packages/game-development.scm (ois): New variable.
2017-08-09 13:53:16 +03:00
d84b09e937
gnu: dealii: Update to 8.5.0.
...
* gnu/packages/maths.scm (dealii): Update to 8.5.0.
[arguments]: Delete 'hint-example-prefix phase, which would need adjusting for
this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'.
Adjust configuration flags.
2017-08-09 01:56:53 -05:00
05cca6ce90
gnu: stress-make: Patch default shell.
...
* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell
phase.
2017-08-09 01:56:53 -05:00
bd5b5ac0c5
gnu: suitesparse: Update to 4.5.5.
...
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5.
[source]: Add 'modules' and 'snippet' field to remove bundled source.
[arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis.
Make build parallel, since it now appears to be safe.
[inputs]: Add metis.
2017-08-09 01:56:53 -05:00
2509522c4f
gnu: suitesparse: Use modify-phases.
...
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09 01:56:53 -05:00
9731c412e9
gnu: petsc, slepc: Use 'parallel-job-count'.
...
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to
override default unlimited '-j'.
(petsc)[arguments]: Scrub build machine cores from installed files in
'clean-local-references' phase.
2017-08-09 01:56:53 -05:00
baeaf8821d
gnu: slepc: Update to 3.7.4.
...
* gnu/packages/maths.scm (slepc): Update to 3.7.4.
[source]: Use direct source link. Remove 'file-name' field.
2017-08-09 01:56:52 -05:00
41a46a5035
gnu: petsc: Update to 3.7.6.
...
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-09 01:56:46 -05:00
026051953d
gnu: epiphany: Update to 3.24.3.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.24.3.
2017-08-09 07:20:57 +02:00
Ricardo Wurmus
Efraim Flashner
Nicolas Goaziou
Danny Milosavljevic
Tobias Geerinckx-Rice
Julien Lepiller
ng0
Kei Kebreau
Alex Vong
ng0
Leo Famulari
Christopher Baines
Oleg Pykhalov
Marius Bakke
Ben Woodcroft
Ricardo Wurmus
Arun Isaac
Mark H Weaver
Andy Wingo
Peter Mikkelsen
Manolis Ragkousis
Eric Bavier