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119622 Commits (5f86eebd240958001ab4f178005f355d24d9b7f1)

Author SHA1 Message Date
Timothy Sample 5f86eebd24
gnu: disarchive: Update to 0.6.0. 
* gnu/packages/backup.scm (disarchive): Update to 0.6.0; add
'guile-bzip2' as an input.
* gnu/packages/package-management.scm (guix): Add 'guile-bzip2' as
an input to enable bzip2 support when using Disarchive.
* guix/self.scm (%packages): Add 'guile-bzip2'.
(compiled-guix): Include 'guile-bzip2' as a dependency when building
the 'guix' command.
* etc/disarchive-manifest.scm (tarball-origin?): Include bzip2
tarballs.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
Change-Id: I4da479054f6bef225f5ea979c091152f8a9e51d5
 2024-02-12 21:26:01 -06:00
Timothy Sample 94c0eeea49
gnu: Add guile-bzip2. 
* gnu/packages/guile.scm (guile-bzip2): New package.

Change-Id: I450395f6699d4b622c8043c17a197c799255a9bb
 2024-02-12 21:25:55 -06:00
Sharlatan Hellseher ffc7650c11
gnu: nebula: Use G-expressions. 
* gnu/packages/networking.scm (nebula) [arguments]: Use G-expressions.
<#:phases>: Set version during build time.

Change-Id: I0cda81f952e3543ac2a01d5d917df4944ac82950
 2024-02-12 23:33:23 +00:00
Alexey Abramov ace1785c5d
gnu: nebula: Update to 1.8.2. 
* gnu/packages/networking.scm (nebula): Update to 1.8.2.
[arguments]: <#:go>: Use go-1.20.
[inputs]: Remove go-github-com-imdario-mergo. Add go-dario-cat-mergo.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ifab21622036f1d09dc61c687142f21515dd4f688
 2024-02-12 23:33:23 +00:00
Dominic Martinez 082e13017d
gnu: Add nebula. 
* gnu/packages/networking.scm (nebula): New variable.

Co-authored-by: Alexey Abramov <levenson@mmer.org>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I3b38d3e6255efd18d88b1762db7bf5c8b6f46b1c
 2024-02-12 23:33:23 +00:00
Alexey Abramov 062a4a49db
gnu: Add go-dario-cat-mergo. 
This is a new version of go-github-com-imdario-mergo. It was renamed and
now used as dario.cat/mergo in tests and other places.

* gnu/packages/golang.scm (go-dario-cat-mergo): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I10cf6c962441535493889820543d29a9a9b20e98
 2024-02-12 23:33:23 +00:00
Sharlatan Hellseher 9cdcf7c6f9
gnu: go-github-com-stathat-go: Move to golang-xyz. 
* gnu/packages/syncthing.scm (go-github-com-stathat-go): Move from here ...
* gnu/packages/golang-xyz.scm: ... to here.

Change-Id: I804043f512b60665233fba61da3f2225042d8d65
 2024-02-12 23:33:23 +00:00
Sharlatan Hellseher 3da105865c
gnu: go-github-com-rcrowley-go-metrics: Move to golang-xyz. 
* gnu/packages/syncthing.scm (go-github-com-rcrowley-go-metrics): Move
from here ...
* gnu/packages/golang-xyz.scm: ... to here.

Change-Id: Id153e4b8295c1430077941c5e4ee854ef28a56fa
 2024-02-12 23:33:23 +00:00
Sharlatan Hellseher ae60a953d6
gnu: go-github-com-prometheus-client-model: Move to golang-xyz. 
* gnu/packages/syncthing.scm (go-github-com-prometheus-client-model):
Move from here
* gnu/packages/golang-xyz.scm: ... to here.

* gnu/packages/golang.scm: Add (gnu packages golang-xyz) module.
* gnu/packages/ipfs.scm: As above.
* gnu/packages/networking.scm: As above.

Change-Id: Ibf79be7fd49acc8fc88bf2411a4d7d89b44713d0
 2024-02-12 23:33:23 +00:00
Dominic Martinez ac9044699a
gnu: Add go-github-com-skip2-go-qrcode. 
* gnu/packages/golang-xyz.scm (go-github-com-skip2-go-qrcode): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I3510982cdbc7b540281c0b0f074c1cb140ce249b
 2024-02-12 23:33:23 +00:00
Dominic Martinez 9a938589d1
gnu: Add go-github-com-songgao-water. 
* gnu/packages/golang-xyz.scm (go-github-com-songgao-water): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: If08b2994f932b604d2d537e7d3d02e90934542fb
 2024-02-12 23:33:23 +00:00
Dominic Martinez 7e4aebc39b
gnu: Add go-github-com-nbrownus-go-metrics-prometheus. 
* gnu/packages/golang-xyz.scm (go-github-com-nbrownus-go-metrics-prometheus): New
variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I1fbaa3a54c761bbdb440ca211d76f6c43b4434ce
 2024-02-12 23:33:22 +00:00
Dominic Martinez eeda1c1cbc
gnu: Add go-github-com-miekg-dns. 
* gnu/packages/golang-xyz.scm (go-github-com-miekg-dns): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I095c6a7a709614d2cbd1feb9488dfee47a35da57
 2024-02-12 23:33:22 +00:00
Dominic Martinez a90bc5030d
gnu: Add go-github-com-cyberdelia-go-metrics-graphite. 
* gnu/packages/golang-xyz.scm (go-github-com-cyberdelia-go-metrics-graphite): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Id77785387b23a8317b21c2a7f7114f1c1aa6328b
 2024-02-12 23:33:22 +00:00
Dominic Martinez 3fa6971f2c
gnu: Add go-github-com-armon-go-radix. 
* gnu/packages/golang-xyz.scm (go-github-com-armon-go-radix): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iee5b73c53cca088a05563377b691d607cc745b0e
 2024-02-12 23:33:22 +00:00
Dominic Martinez 0969cb0b48
gnu: Add go-github-com-anmitsu-go-shlex. 
* gnu/packages/golang-xyz.scm (go-github-com-anmitsu-go-shlex): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I75f63d866fb8c6cd8e80ac48fc207236d839a028
 2024-02-12 23:33:07 +00:00
Ricardo Wurmus bb4f0509b7
gnu: mutter: Disable one test when building for i686-linux. 
This test no longer fails in future versions, so this is only a temporary
workaround.

* gnu/packages/gnome.scm (mutter)[arguments]: Conditionally disable the
activation test on i686-linux.

Change-Id: Ic8552355971b9926b7f72c228edf881a1c0cea1e
 2024-02-12 22:04:22 +01:00
Denis 'GNUtoo' Carikli bb92a4d7bc
gnu: debootstrap: use trisquel-keyring. 
* gnu/packages/debian.scm (debootstrap): [arguments]: In 'patch-source'
phase, use trisquel-keyring.
[inputs]: Add trisquel-keyring, zstd.

Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: I43d5543db4374b373dac65f65cfcef6a3df3b5bf
 2024-02-12 14:41:46 +02:00
Denis 'GNUtoo' Carikli 15a9652e74
gnu: Add trisquel-keyring. 
* gnu/packages/debian.scm (trisquel-keyring): New variable.

Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2024-02-12 14:41:46 +02:00
Efraim Flashner 3876c3a7c2
gnu: rrdtool: Remove unneeded input. 
* gnu/packages/rrdtool.scm (rrdtool)[inputs]: Remove gtk+-2.

Change-Id: Iee01e038f1361e763ea0df62625fb06b65ce45d5
 2024-02-12 14:41:46 +02:00
Ludovic Courtès e0ade40c2b
services: virtual-build-machine: Use a larger partition by default. 
So far the partition had too little free space.

* gnu/services/virtualization.scm (%default-virtual-build-machine-image-size):
New variable.
(virtual-build-machine-default-image): Define ‘partitions’ field.

Change-Id: Iffe0f316eecad8754d29f8c811cdc4836a818a3f
 2024-02-12 12:03:52 +01:00
Ludovic Courtès 15fd5d6c3f
services: virtual-build-machine: Add base file systems to default OS. 
This provides /dev/pts and other things that are important for
builds (for example, Python 2.x has ‘openpty’ unit tests that can only
succeed when /dev/pts is available.)

* gnu/services/virtualization.scm (%virtual-build-machine-operating-system)
[file-systems]: Add %BASE-FILE-SYSTEMS.

Change-Id: I7d12a4cb491e957bf55e6c5f9dd09c013473ca42
 2024-02-12 12:03:52 +01:00
Remco van 't Veer faeae5114c
gnu: ruby-3.2: Update to 3.2.3. 
Fixes CVE-2023-36617 (ReDoS vulnerability in URI).

* gnu/packages/ruby.scm (ruby-3.2): Update to 3.2.3.

Signed-off-by: Andreas Enge <andreas@enge.fr>
Change-Id: I20d92f4b6e566466e5af087712e91d0ecc1735da
 2024-02-12 11:49:11 +01:00
Allan Adair bd9da70212
gnu: vpn-slice: Include required inputs "iproute" and "iptables". 
vpn-slice expects commands "ip" and "iptables" to be found according to FHS
paths.

* gnu/packages/vpn.scm (vpn-slice)[arguments]: Include inputs "iproute" and
"iptables" and patch "vpn_slice/linux.py" to use correct locations in the
store.

Change-Id: Ia06e2bb99f060108cc0758e89174294bcbb2848d
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2024-02-12 09:08:11 +01:00
Artyom V. Poptsov c4372f7ebf
gnu: guile-png: Update to 0.7.2. 
* gnu/packages/guile-xyz.scm (guile-png): Update to 0.7.2.

Change-Id: Ic84b1472bdfdf47db26e0954b6135054290e49b0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-11 21:12:52 +00:00
Sharlatan Hellseher ab3da80ae1
gnu: abjad-ext-rmakers: Simplify package. 
* gnu/packages/music.scm (abjad-ext-rmakers) [build-system]: Swap to
pyproject-build-system.
[arguments]: Use standard 'check phase.

Change-Id: Ic2591fbe35d7479e120048d334cc202a5e1c9243
 2024-02-11 21:03:07 +00:00
Sharlatan Hellseher d0671703b6
gnu: abjad-ext-rmakers: Fix build. 
* gnu/packages/music.scm (abjad-ext-rmakers) [native-inputs]: Add
python-sphinx-autodoc-typehints.

Change-Id: Ide0e00b3c12180d341f1ed8052fb4e10a6504499
 2024-02-11 21:03:07 +00:00
Sharlatan Hellseher 70a43b328f
gnu: abjad-ext-nauert: Simplify package. 
* gnu/packages/music.scm (abjad-ext-nauert) [build-system]: Swap to
pyproject-build-system.
[arguments]: Use standard 'check phase.

Change-Id: Ica32dd692964d200a81628e82a8333656dc10170
 2024-02-11 21:03:06 +00:00
Sharlatan Hellseher 850bf6d65f
gnu: abjad-ext-nauert: Fix build. 
* gnu/packages/music.scm (abjad-ext-nauert) [native-inputs]: Add
python-sphinx-autodoc-typehints.

Change-Id: Iec9dcbf1127ef7dc7b3bcd5a4be9eada51424f4a
 2024-02-11 21:03:06 +00:00
Sharlatan Hellseher 592a6e1ceb
gnu: python-pytest-socket: Simplify package, enable tests. 
* gnu/packages/python-check.scm (python-pytest-socket) [build-system]:
Swap to pyproject-build-system.
[arguments] <#:test-flags>: Disable tests requiring network
access. <#:phases>: Use standard phases.

Change-Id: Ib7fe0b3dab4e269c00856a10b8ca23acc8c8e180
 2024-02-11 21:03:06 +00:00
Sharlatan Hellseher 5ccae1ae44
gnu: python-pyinstrument: Enable tests. 
* gnu/packages/python-check.scm (python-pyinstrument) [build-system]:
Swap to pyproject-build-system.
[native-inputs]: Add python-greenlet.

Change-Id: I1cd0c3e906fbbdc561e66bae9fe35333f61801cf
 2024-02-11 21:03:06 +00:00
Sharlatan Hellseher bcd9a40c49
gnu: python-pyinstrument: Update to 4.6.2. 
* gnu/packages/python-check.scm (python-pyinstrument): Update to 4.6.2.

Change-Id: I28e147272f273c04f7221f6d4f70677aee9a3747
 2024-02-11 21:03:06 +00:00
Sharlatan Hellseher 120e2a64da
gnu: python-pytest-csv: Simplify package. 
* gnu/packages/python-check.scm (python-pytest-csv) [build-system]: Swap
to pyproejct-build-system.
[arguments]: Use standard 'check phase.

Change-Id: Iae04747b117bf5b5f9fb3c8b57cd40b8822edd77
 2024-02-11 21:03:06 +00:00
Sharlatan Hellseher a3f02bc780
gnu: python-beartype: Simplify package. 
* gnu/packages/python-check.scm (python-beartype) [build-system]: Swap
to pyproject-build-system.
[arguments]: Use standard 'check phase and <#:test-flags>.

Change-Id: I372c5be3b142f0e25d15fd2bac20fc9cd4d8030c
 2024-02-11 21:03:06 +00:00
Troy Figiel 579a1a8c02
gnu: Add python-pandas-vet. 
* gnu/packages/python-xyz.scm (python-pandas-vet): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2024-02-11 21:03:06 +00:00
Ricardo Wurmus 4bab3a2602
gnu: google-highway: Fix tests on i686-linux. 
The tests are supposed to be skipped when there are problems with excess
precision.

* gnu/packages/cpp.scm (google-highway)[arguments]: Modify phases when
building for i686-linux to conditionally patch the tests.

Change-Id: I6381a8c9f65196fd1d7d4e4130d784863b634df5
 2024-02-11 21:44:38 +01:00
Sören Tempel 16d2be6414
gnu: Add binsec. 
* gnu/packages/ocaml.scm (binsec): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Ifc57720f97f9ffa8c3558e3cd2d741cdbf73ee3a
 2024-02-11 17:30:33 +01:00
Sören Tempel 4221b50acb
gnu: Add ocaml-grain-dypgen. 
* gnu/packages/ocaml.scm (ocaml-grain-dypgen): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I9804cb17863c112d57f0f93b414e568707dae88d
 2024-02-11 17:30:22 +01:00
Sören Tempel ad2c1833a0
gnu: Add ocaml-toml. 
* gnu/packages/ocaml.scm (ocaml-toml): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: Ia3ec7d0261cd6950f1a73641fc65b3ef7ce98f24
 2024-02-11 17:28:59 +01:00
Sören Tempel 8b67932851
gnu: Add ocaml-iso8601 
* gnu/packages/ocaml.scm (ocaml-iso8601): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
Change-Id: I9463d6f6e3f8ffe43a0cfb1c95edea42fc770323
 2024-02-11 17:26:37 +01:00
Ricardo Wurmus a8930124d5
gnu: r-bionero: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.10.1.

Change-Id: I26b6c35d8966744bbcb79d98328c9734360f04f3
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus b61f052752
gnu: r-biocset: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.16.1.

Change-Id: Ib758189b9439ec822edb2e85d261b4ccd8618609
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus c23224da61
gnu: r-bgx: Update to 1.68.3. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.68.3.

Change-Id: I8aa747dd0a725f84dca1441693ce573a4567f70c
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus 823def76d4
gnu: r-gofuncr: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.22.2.

Change-Id: Iba4be0c63d792caddcea69ee77aa94ce6869c1d2
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus 666393ec34
gnu: r-glmgampoi: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.14.2.

Change-Id: Id7265b49246e75d23086dc159da9b4f69a756a7d
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus 579683f16f
gnu: r-trajectoryutils: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.10.1.

Change-Id: I18a94851cd139951c2987054c22f01809d2479b3
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus 95785f4587
gnu: r-rcas: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.28.3.
[propagated-inputs]: Remove r-ggseqlogo and pandoc; add r-seqlogo.

Change-Id: I8be7d8fc4278c8ec2db6932935f70292a4f47049
 2024-02-11 16:55:14 +01:00
Ricardo Wurmus d24ba5f374
gnu: r-genomeinfodb: Update to 1.38.6. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.6.

Change-Id: I57a53d4a73e9b4ce36d97092dab0789d6509484f
 2024-02-11 16:55:13 +01:00
Ricardo Wurmus 87110a22a9
gnu: r-dittoseq: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.14.2.

Change-Id: I8930f72b47ff92b3b798d9a45fc0598bec1ba53e
 2024-02-11 16:55:13 +01:00
Ricardo Wurmus 64eb32a2d0
gnu: r-bsgenome: Update to 1.70.2. 
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.70.2.

Change-Id: I45ba28279e0b843bcd635c2e30fb696e85195ce7
 2024-02-11 16:55:13 +01:00