68cff11d72
gnu: r-rsqlite: Update to 2.1.4.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.4.
2019-12-06 21:39:25 +01:00
8a4cba335a
gnu: r-plotrix: Update to 3.7-7.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-7.
2019-12-06 21:39:25 +01:00
d8d606300c
gnu: r-uwot: Update to 0.1.5.
...
* gnu/packages/cran.scm (r-uwot): Update to 0.1.5.
2019-12-06 21:39:25 +01:00
96fe120b4e
gnu: r-irkernel: Update to 1.1.
...
* gnu/packages/cran.scm (r-irkernel): Update to 1.1.
2019-12-06 21:39:24 +01:00
bf3ea5ec5e
gnu: r-listenv: Update to 0.8.0.
...
* gnu/packages/cran.scm (r-listenv): Update to 0.8.0.
2019-12-06 21:39:24 +01:00
3c8d39e5c0
gnu: r-spam: Update to 2.5-0.
...
* gnu/packages/cran.scm (r-spam): Update to 2.5-0.
2019-12-06 21:39:24 +01:00
b159b8a760
gnu: r-multicool: Update to 0.1-11.
...
* gnu/packages/cran.scm (r-multicool): Update to 0.1-11.
2019-12-06 21:39:24 +01:00
6051268076
gnu: r-factoextra: Update to 1.0.6.
...
* gnu/packages/cran.scm (r-factoextra): Update to 1.0.6.
2019-12-06 21:39:24 +01:00
9d617f53ab
gnu: r-renv: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-renv): Update to 0.9.0.
2019-12-06 21:39:24 +01:00
e8ae22a6e5
gnu: r-openxlsx: Update to 4.1.4.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.4.
[propagated-inputs]: Remove r-rlang.
2019-12-06 21:39:24 +01:00
91a38c56e4
gnu: r-heatmaply: Update to 1.0.0.
...
* gnu/packages/cran.scm (r-heatmaply): Update to 1.0.0.
[propagated-inputs]: Add r-egg.
2019-12-06 21:39:24 +01:00
0c836f58cf
gnu: Add r-egg.
...
* gnu/packages/cran.scm (r-egg): New variable.
2019-12-06 21:39:24 +01:00
75f021f4a6
gnu: r-cubature: Update to 2.0.4.
...
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.
2019-12-06 21:39:24 +01:00
ff653ace8f
gnu: r-geometry: Update to 0.4.5.
...
* gnu/packages/cran.scm (r-geometry): Update to 0.4.5.
2019-12-06 21:39:24 +01:00
103eef6442
gnu: r-htmltable: Update to 1.13.3.
...
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.3.
2019-12-06 21:39:24 +01:00
92dddf6ba1
gnu: ruby-i18n: Update to 1.7.0.
...
* gnu/packages/ruby.scm (ruby-i18n): Update to 1.7.0.
[home-page]: Update to new location.
2019-12-06 20:09:15 +01:00
9de12df788
gnu: ruby-public-suffix: Update to 4.0.1.
...
* gnu/packages/ruby.scm (ruby-public-suffix): Update to 4.0.1.
2019-12-06 20:09:15 +01:00
91f7ee8738
gnu: ruby-addressable: Update to 2.7.0.
...
* gnu/packages/ruby.scm (ruby-addressable): Update to 2.7.0.
2019-12-06 20:09:14 +01:00
b2244c6849
gnu: ruby-rspec-its: Update to 1.3.0.
...
* gnu/packages/ruby.scm (ruby-rspec-its): Update to 1.3.0.
[source]: Remove patch.
[arguments]: Add phase to fix ffi-dependency-version.
[native-inputs]: Add ruby-ffi.
2019-12-06 20:09:14 +01:00
0a71e34e49
gnu: Add python-geoip2.
...
* gnu/packages/geo.scm (python-geoip2): New variable.
2019-12-06 19:38:56 +01:00
b1414a8136
gnu: Add python-maxminddb.
...
* gnu/packages/geo.scm (python-maxminddb): New variable.
2019-12-06 19:38:56 +01:00
53c9b39850
gnu: Add libmaxminddb.
...
* gnu/packages/geo.scm (libmaxminddb): New variable.
2019-12-06 19:38:56 +01:00
a7469d1602
gnu: Add gunicorn.
...
* gnu/packages/python-web.scm (gunicorn): New variable
2019-12-06 19:38:56 +01:00
9720104c43
gnu: Add ncompress.
...
* gnu/packages/compression.scm (ncompress): New variable.
* gnu/packages/patches/compress-fix-softlinks.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-12-06 06:52:36 +01:00
d4d7bf60e8
gnu: linux-libre: Update to 5.3.15.
...
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.15.
(linux-libre-5.3-pristine-source): Update hash.
2019-12-05 14:29:45 -05:00
4dcd63d5a5
gnu: linux-libre@4.19: Update to 4.19.88.
...
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.88.
(linux-libre-4.19-pristine-source): Update hash.
2019-12-05 14:29:10 -05:00
1c90bc7ee6
gnu: linux-libre@4.14: Update to 4.14.158.
...
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.158.
(linux-libre-4.14-pristine-source): Update hash.
2019-12-05 14:28:34 -05:00
5ecee81290
gnu: linux-libre@4.9: Update to 4.9.206.
...
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.206.
(linux-libre-4.9-pristine-source): Update hash.
2019-12-05 14:27:58 -05:00
2eec86e145
gnu: linux-libre@4.4: Update to 4.4.206.
...
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.206.
(linux-libre-4.4-pristine-source): Update hash.
2019-12-05 14:26:46 -05:00
2c2fc24b89
gnu: Add west.
...
* gnu/packages/embedded.scm (west): New variable.
2019-12-05 16:54:59 +01:00
34bf686952
gnu: Add python-pykwalify.
...
* gnu/packages/python-xyz.scm (python-pykwalify): New variable.
2019-12-05 16:54:59 +01:00
88f06fd015
gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
...
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
javascript module instead of lisp.
2019-12-05 16:23:06 +01:00
ba362ec867
gnu: libimagequant: Update to 2.12.5.
...
* gnu/packages/image.scm (libimagequant): Update to 2.12.5.
2019-12-05 15:38:52 +01:00
252f44ffd9
gnu: procenv: Update to 0.51.
...
* gnu/packages/linux.scm (procenv): Update to 0.51.
2019-12-05 15:38:52 +01:00
d9544d91a6
Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm."
...
This reverts commit ac1ee30f4f
2019-12-05 15:38:52 +01:00
b665a24619
gnu: librsvg-next: Use generate-all-checksums.
...
* gnu/packages/gnome.scm (librsvg-next)[arguments]: Use
generate-all-checksums instead of manually traversing the directories.
2019-12-05 16:31:21 +02:00
ac1ee30f4f
gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.
...
* gnu/local.mk: Include lisp-xyz.scm.
* gnu/packages/lisp-xyz.scm: New file.
* gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to
javascript.scm and stumpwm to wm.scm.
* gnu/packages/javascript.scm: Add uglify-js.
* gnu/packages/wm.scm: Add stumpwm.
* gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm.
* gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu/packages/web.scm: Find uglify-js in javascript.scm.
* gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* guix/build-system/minify.scm (default-uglify-js): Find uglify-js in
javascript module instead of lisp.
2019-12-05 13:48:47 +01:00
29e621a013
gnu: Remove unused module import.
...
* gnu/packages/image.scm: Do not import (gnu packages gcc).
2019-12-04 23:18:24 +01:00
0fa9f29a51
gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.
...
* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image.scm (libjpeg-turbo/fixed): New variable.
(libjpeg-turbo)[replacement]: New field.
2019-12-04 23:18:24 +01:00
4fe7adcbcc
gnu: pd: Update to 0.50-2.
...
* gnu/packages/music.scm (pd): Update to 0.50-2.
2019-12-04 23:10:21 +01:00
ce63a3b90a
gnu: libgig: Update to 4.2.0.
...
* gnu/packages/music.scm (libgig): Update to 4.2.0.
2019-12-04 23:10:21 +01:00
29a87ed18c
gnu: imapfilter: Update to 2.6.16.
...
* gnu/packages/mail.scm (imapfilter): Update to 2.6.16.
[arguments]: Remove ‘fix-include-path’ phase.
2019-12-04 23:10:21 +01:00
8f15c1c9fe
gnu: mpop: Update to 1.4.6.
...
* gnu/packages/mail.scm (mpop): Update to 1.4.6.
2019-12-04 23:10:21 +01:00
f3d4015385
gnu: girara: Fetch sources from git.
...
The tarball URI is having server issues. Use the upstream git
repository instead until this is resolved.
Reported by Marius Bakke <mbakke@fastmail.com>.
* gnu/packages/gtk.scm (girara)[source]: Switch to GIT-FETCH.
2019-12-04 23:10:21 +01:00
6b84a31d90
gnu: emacs-org-contrib: Fix build.
...
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Refer to the updated
installation directory.
2019-12-04 22:29:38 +01:00
e18aeb416d
gnu: emacs-scel: Fix build.
...
* gnu/packages/emacs-xyz.scm (emacs-scel): Refer to the updated installation
directory.
2019-12-04 22:29:38 +01:00
c63d4725d1
gnu: knot: Update to 2.9.1 [fixes CVE-2019-19331].
...
* gnu/packages/dns.scm (knot): Update to 2.9.1.
2019-12-04 16:09:20 -05:00
1cd9149938
gnu: notmuch: Fix build.
...
* gnu/packages/mail.scm (notmuch): Refer to the updated installation
directory.
2019-12-04 21:57:12 +01:00
66c15f72f8
gnu: ffmpeg: Update to 3.4.7.
...
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.7.
2019-12-04 21:26:56 +01:00
63e8df382f
gnu: feh: Update to 3.3.
...
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/image-viewers.scm (feh): Update to 3.3.
[source](patches): Remove.
2019-12-04 21:26:50 +01:00
33b59c1a3e
Merge branch 'staging'
2019-12-04 20:12:41 +01:00
936aa05209
gnu: Remove duplicate nlohmann-json-cpp package.
...
* gnu/packages/serialization.scm (nlohmann-json-cpp): Move variable ...
* gnu/packages/cpp.scm (nlohmann-json-cpp): ... here. Mark as deprecated by
JSON-MODERN-CXX.
* gnu/packages/jupyter.scm (xeus)[inputs]: Change NLOHMANN-JSON-CPP to
JSON-MODERN-CXX.
* gnu/packages/video.scm (mkvtoolnix)[inputs]: Likewise.
2019-12-04 20:10:34 +01:00
208e743415
gnu: sunxi-tools: Simplify build.
...
* gnu/packages/admin.scm (sunxi-tools-source): New procedure.
(sunxi-target-tools): New variable.
(sunxi-tools)[source]: Use sunxi-tools-source.
[native-inputs]: Remove cross-gcc, cross-libc, cross-libc-static.
Add sunxi-target-tools.
[arguments]<#:make-flags>: Modify.
[arguments]<#:phases>[set-environment-up]: Delete phase.
[build-armhf]: Delete phase.
[install]: Modify.
2019-12-04 18:56:31 +01:00
d75540473f
gnu: bitlbee: Use Python 3.
...
* gnu/packages/messaging.scm (bitlbee)[inputs]: Replace python-2 with python.
[arguments]: Set the PYTHON environment variable before configuring.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-12-04 18:16:08 +01:00
8548b3dd87
gnu: ncmpc: Update to 0.36.
...
* gnu/packages/mpd.scm (ncmpc): Update to 0.36.
2019-12-04 10:20:28 -05:00
e71513f74b
gnu: MPD: Update to 0.21.16.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.16.
2019-12-04 10:20:24 -05:00
d9447779c7
gnu: tmux: Update to 3.0a.
...
* gnu/packages/tmux.scm (tmux): Update to 3.0a.
2019-12-04 08:33:31 -05:00
34369f3103
gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes].
...
Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008,
CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012.
* gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update hash for the firefox source tarball. Update to the
latest from gnuzilla.git. Don't apply icecat-gnuzilla-fixes.patch. Remove
determinism fix in makeicecat that is now upstream. Tweak a status message.
(icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt.
2019-12-04 06:36:45 -05:00
269c827c69
gnu: emacs-transient: Refer to the updated installation directory.
...
* gnu/packages/emacs-xyz.scm (emacs-transient)[arguments]: Refer to the
updated installation directory.
2019-12-04 12:13:16 +01:00
8f523eb99d
gnuL librsvg-next: Unvendor some rust crates.
...
* gnu/packages/gnome.scm (computed-origin-method, librsvg-next-source):
New variables.
(librsvg-next)[source]: Use computed librsvg-next-source.
[arguments]: Import %cargo-build-modules. Enable 'patch-source-shebangs,
'patch-generated-source-shebangs, 'patch-user-bin-file phases. Change
custom phase to patch cargo checksums and Cargo.lock.
2019-12-04 12:32:40 +02:00
4c503ed503
gnu: emacs-emacsql: Fix build.
...
* gnu/packages/emacs-xyz.scm (emacs-emacsql): Refer to the updated
installation directory.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2019-12-04 11:06:49 +01:00
7185a8dac4
gnu: emacs-ert-runner: Fix build.
...
* gnu/packages/emacs-xyz.scm (emacs-ert-runner): Refer to the updated
installation directory.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2019-12-04 11:06:49 +01:00
903765f0d9
gnu: emacs: Use load-path instead of EMACSLOADPATH.
...
This enables the use of the subdirs.el feature of Emacs, where specifying a
directory in EMACSLOADPATH translates into a `load-path' variable containing
the directory and all its sub-directories.
* gnu/packages/aux-files/emacs/guix-emacs.el (guix-emacs-autoload-packages):
Use `load-path' directly instead of parsing EMACSLOADPATH.
Reported-by: Leo Prikler <leo.prikler@student.tugraz.at>
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2019-12-04 11:06:49 +01:00
c320acd633
gnu: emacs: Fix guix-emacs.el indentation.
...
* gnu/packages/aux-files/emacs/guix-emacs.el: Fix indentation.
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2019-12-04 11:06:49 +01:00
9aca5ceac8
gnu: emacs: Simplify the EMACSLOADPATH search path specification.
...
The EMACSLOADPATH can be greatly simplified by relying on a subdirs.el file
that causes Emacs to search recursively a directory found in EMACSLOADPATH.
* gnu/packages/emacs.scm (emacs)[native-search-paths]: Remove the match-all
file pattern regexp. Remove the versioned site-lisp directory from searched
files, as it appears unused by Emacs.
Reported-by: Leo Prikler <leo.prikler@student.tugraz.at>
Signed-off-by: Clément Lassieur <clement@lassieur.org>
2019-12-04 11:06:49 +01:00
6ea613ce63
gnu: r-catterplots: Update to 0-3.ae17cd5.
...
* gnu/packages/statistics.scm (r-catterplots): Update to 0-3.ae17cd5.
2019-12-04 10:07:50 +01:00
9e21a1c803
gnu: hexchat: Fix up inputs.
...
* gnu/packages/messaging.scm (hexchat)[inputs]: Move glib:bin ...
[native-inputs]: ... to here.
2019-12-04 10:56:04 +02:00
5045821e2a
gnu: ocaml-gen: Don't use unstable tarball.
...
* gnu/packages/ocaml.scm (ocaml-gen)[source]: Download using git-fetch.
2019-12-04 10:55:29 +02:00
0f4f5715a4
gnu: p7zip: Move *asm inputs to native-inputs.
...
* gnu/packages/compression.scm (p7zip)[inputs]: Move yasm, nasm ...
[native-inputs]: ... to here.
2019-12-04 10:55:28 +02:00
bcda07797a
gnu: lablgtk: Use a source file-name.
...
* gnu/packages/ocaml.scm (lablgtk)[source]: Add 'file-name'.
2019-12-04 10:55:28 +02:00
e21b668e52
gnu: r-rversions: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-rversions): Update to 2.0.1.
2019-12-04 09:39:43 +01:00
14ebd6f762
gnu: r-survival: Update to 3.1-8.
...
* gnu/packages/statistics.scm (r-survival): Update to 3.1-8.
2019-12-04 09:39:36 +01:00
41728d234b
gnu: r-all: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-all)[source]: Use bioconductor-uri.
2019-12-04 09:36:34 +01:00
545e67ac03
gnu: r-hsmmsinglecell: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-hsmmsinglecell)[source]: Use
bioconductor-uri.
2019-12-04 09:36:15 +01:00
b86f77469b
gnu: r-arrmdata: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-arrmdata)[source]: Use bioconductor-uri.
2019-12-04 09:35:59 +01:00
ced61edf5d
gnu: r-abadata: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-abadata)[source]: Use bioconductor-uri.
2019-12-04 09:35:44 +01:00
eed2766a45
gnu: r-do-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-do-db)[source]: Use bioconductor-uri.
2019-12-04 09:35:26 +01:00
25f567a85a
gnu: r-illuminahumanmethylationepicmanifest: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest)[source]:
Use bioconductor-uri.
2019-12-04 09:35:08 +01:00
6aca4054e0
gnu: r-fdb-infiniummethylation-hg19: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19)[source]: Use
bioconductor-uri.
2019-12-04 09:34:47 +01:00
c271d99025
gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:34:13 +01:00
1afdf41b49
gnu: r-txdb-mmusculus-ucsc-mm9-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:54 +01:00
d78db08862
gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
2019-12-04 09:33:35 +01:00
f2580a1385
gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:33:09 +01:00
717d7cda9d
gnu: r-genelendatabase: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
2019-12-04 09:32:48 +01:00
e7a8cf2e6e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:32:22 +01:00
411be88bf3
gnu: r-org-mm-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:32:03 +01:00
f53becc6d8
gnu: r-org-hs-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:46 +01:00
7bb65a2227
gnu: r-org-dr-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:31:19 +01:00
b0dfc79b0d
gnu: r-org-dm-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:58 +01:00
1c05e637a4
gnu: r-org-ce-eg-db: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
2019-12-04 09:30:35 +01:00
f83404bc5b
gnu: r-bsgenome-mmusculus-ucsc-mm10: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:29:56 +01:00
51dc4a2d70
gnu: r-bsgenome-mmusculus-ucsc-mm9-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:29:26 +01:00
21f6dae73d
gnu: r-bsgenome-mmusculus-ucsc-mm9: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:28:54 +01:00
a47646bd05
gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:28:34 +01:00
88e7c7db59
gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:28:04 +01:00
bf05ece1a2
gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
2019-12-04 09:27:15 +01:00
87073b7ecb
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
2019-12-04 09:26:22 +01:00
149f351f38
gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
2019-12-04 09:25:10 +01:00
6998ecba74
gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.
...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
2019-12-04 09:24:09 +01:00
19e67f8216
gnu: emacs-olivetti: Update to 1.8.1.
...
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 1.8.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 09:00:38 +01:00
d6445fa690
gnu: emacs-irony-mode: Update to 1.4.0.
...
* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.4.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 09:00:31 +01:00
362e5f9408
gnu: emacs-elisp-demos: Update to 2019.12.01.
...
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2019.12.01.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 09:00:22 +01:00
17f88b9c01
gnu: emacs-doom-modeline: Update to 2.8.0.
...
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04 08:59:43 +01:00
312ec128af
gnu: python-pandas: Move to (gnu packages python-science).
...
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
2019-12-04 08:56:36 +01:00
dc3e62a494
gnu: handbrake: Upgrade to 1.3.0.
...
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove
patch.
[native-inputs]: Remove cmake and curl.
[inputs]: Add dav1d and numactl.
[arguments]: Add "--disable-nvenc" to configure flags in place of patch.
Adjust "bootstrap" phase in response to upstream changes.
Add "patch-SHELL" and "relax-reqs" phases.
2019-12-03 22:20:22 -06:00
4c16ffd383
gnu: tcc: Add search paths and drop the wrapper.
...
* gnu/packages/c.scm (tcc): Add native search paths.
(tcc-wrapper): Remove variable.
2019-12-03 22:18:08 +01:00
1b6c5e8039
gnu: cmocka: Update to 1.1.5.
...
* gnu/packages/check.scm (cmocka): Update to 1.1.5.
2019-12-03 21:50:04 +01:00
efa45291b7
gnu: girara: Update to 0.3.3.
...
* gnu/packages/gtk.scm (girara): Update to 0.3.3.
2019-12-03 21:50:04 +01:00
741b505307
gnu: libcdio: Update to 2.1.0.
...
* gnu/packages/cdrom.scm (libcdio): Update to 2.1.0.
2019-12-03 21:50:04 +01:00
a344a1af07
gnu: libcdio-paranoia: Update to 10.2+2.0.0.
...
* gnu/packages/cdrom.scm (libcdio-paranoia): Update to 10.2+2.0.0.
2019-12-03 21:50:03 +01:00
6b9ec7b0ef
gnu: libburn: Update to 1.5.2.
...
* gnu/packages/cdrom.scm (libburn): Update to 1.5.2.
2019-12-03 21:50:03 +01:00
dfe11a489b
gnu: r-rsqlite: Update to 2.1.3.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.3.
2019-12-03 14:54:20 +01:00
64d576e514
gnu: r-roxygen2: Update to 7.0.2.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.2.
2019-12-03 14:54:13 +01:00
3fff4de729
gnu: r-testthat: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.1.
2019-12-03 14:54:06 +01:00
6a7ac0a829
gnu: r-rspectra: Update to 0.16-0.
...
* gnu/packages/cran.scm (r-rspectra): Update to 0.16-0.
2019-12-03 14:53:59 +01:00
8aab9b98cf
gnu: r-sjplot: Update to 2.8.1.
...
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.1.
2019-12-03 14:53:50 +01:00
de5092bab0
gnu: r-bayesplot: Update to 1.7.1.
...
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.1.
2019-12-03 14:53:42 +01:00
27c2a6a160
gnu: r-maptools: Update to 0.9-9.
...
* gnu/packages/cran.scm (r-maptools): Update to 0.9-9.
2019-12-03 14:53:30 +01:00
a477a5c357
gnu: r-network: Update to 1.16.0.
...
* gnu/packages/cran.scm (r-network): Update to 1.16.0.
2019-12-03 14:53:22 +01:00
bce0fcae12
gnu: r-dendextend: Update to 1.13.2.
...
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.2.
2019-12-03 14:53:14 +01:00
ea5af6e74b
gnu: r-curl: Update to 4.3.
...
* gnu/packages/cran.scm (r-curl): Update to 4.3.
2019-12-03 14:53:01 +01:00
dc7e57833e
gnu: jp2a: Downgrade to 1.0.6.
...
* gnu/packages/image.scm (jp2a): Downgrade to 1.0.6.
[source]: Download from Debian's sources.
[inputs]: Add ncurses.
[native-inputs]: Remove autoconf, automake, pkg-config.
2019-12-03 11:09:47 +02:00
d507ec0994
gnu: toot: Make propagated-inputs regular inputs.
...
* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Move all ...
[inputs]: ... here.
2019-12-03 11:00:14 +02:00
324db47147
gnu: toot: Add missing input.
...
* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Add python-urwid.
2019-12-03 10:59:33 +02:00
0576681c79
gnu: emacs-diff-hl: Update to 1.8.7.
...
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.7.
2019-12-03 01:52:46 +01:00
8e936351d7
gnu: xlockmore: Update to 5.59.
...
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.59.
2019-12-03 01:52:46 +01:00
d539ca11b3
gnu: exo: Update to 0.12.10.
...
* gnu/packages/xfce.scm (exo): Update to 0.12.10.
2019-12-03 01:52:46 +01:00
378506a964
gnu: sysstat: Update to 12.2.0.
...
* gnu/packages/linux.scm (sysstat): Update to 12.2.0.
2019-12-03 01:52:45 +01:00
30954e61b2
gnu: mtr: Use @acronym{}.
...
* gnu/packages/networking.scm (mtr)[description]: Substitute @acronym
for @dfn.
2019-12-03 01:52:45 +01:00
3f80d7ced2
gnu: mtr: Don't use NAME in source URI.
...
* gnu/packages/networking.scm (mtr)[source]: Hard-code NAME.
2019-12-03 01:52:45 +01:00
a36eba4716
gnu: mtr: Update to 0.93.
...
* gnu/packages/networking.scm (mtr): Update to 0.93.
[native-inputs]: Remove now-unnecessary autoconf.
2019-12-03 01:52:45 +01:00
fc1ca29da3
gnu: microcom: Use HTTPS home page.
...
* gnu/packages/microcom.scm (microcom)[home-page]: Use HTTPS.
2019-12-03 01:52:45 +01:00
d9a746d43d
gnu: microcom: Update to 2017.03.0.
...
* gnu/packages/microcom.scm (microcom): Update to 2017.03.0.
2019-12-03 01:52:45 +01:00
b73a930703
gnu: microcom: Use GIT-FILE-NAME.
...
* gnu/packages/microcom.scm (microcom)[source]: Use GIT-FILE-NAME.
2019-12-03 01:52:45 +01:00
6deab02c78
gnu: less: Update to 551.
...
* gnu/packages/less.scm (less): Update to 551.
2019-12-03 01:52:45 +01:00
4e94744dd9
gnu: less: Add upstream source URI.
...
* gnu/packages/less.scm (less)[source]: Add the author's site.
2019-12-03 01:52:44 +01:00
df76e0524d
gnu: nsd: Update to 4.2.3.
...
* gnu/packages/dns.scm (nsd): Update to 4.2.3.
2019-12-03 01:52:44 +01:00
bc134c77e0
gnu: pugixml: Update to 1.10.
...
* gnu/packages/xml.scm (pugixml): Update to 1.10.
[source]: Remove obsolete patch.
* gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-03 01:52:44 +01:00
51058cb232
gnu: eid-mw: Update to 4.4.23.
...
* gnu/packages/security-token.scm (eid-mw): Update to 4.4.23.
2019-12-03 01:52:44 +01:00
468c2402c7
gnu: console-setup: Update to 1.194.
...
* gnu/packages/xorg.scm (console-setup): Update to 1.194.
2019-12-03 01:52:44 +01:00
c6df2f5817
gnu: xclock: Don't use NAME in source URI.
...
* gnu/packages/xorg.scm (xclock)[source]: Hard-code NAME.
2019-12-03 01:52:44 +01:00
fb0f4ab8ed
gnu: xclock: Update to 1.0.9.
...
* gnu/packages/xorg.scm (xclock): Update to 1.0.9.
2019-12-03 01:52:44 +01:00
c93bd94c49
gnu: soundtouch: Use HTTPS home page.
...
* gnu/packages/audio.scm (soundtouch)[home-page]: Use HTTPS.
2019-12-03 01:52:44 +01:00
b1d13e40fe
gnu: snd: Update to 19.9.
...
* gnu/packages/audio.scm (snd): Update to 19.9.
2019-12-03 01:52:43 +01:00
13125c5afe
gnu: Remove python2-socksipychain.
...
* gnu/packages/python-xyz.scm (python2-socksipychain): Remove variable.
2019-12-02 09:45:33 -06:00
8c655deb7d
gnu: pagekite: Update to 1.5.0.191126.
...
* gnu/packages/networking.scm (pagekite): Update to 1.5.0.191126.
[source]: Fetch from GitHub.
[arguments]: Build with Python 3.
[inputs]: Add python-six.
2019-12-02 09:45:32 -06:00
d97cdff18e
gnu: python-socksipychain: Update to 2.1.0.
...
* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.0.
2019-12-02 09:45:31 -06:00
ec1224a73b
gnu: python-scipy: Move to (gnu packages python-science).
...
* gnu/packages/python-xyz.scm (python-scipy, python2-scipy): Move these from
here...
* gnu/packages/python-science.scm (python-scipy, python2-scipy): ...to here.
* gnu/packages/bioinformatics.scm, gnu/packages/machine-learning.scm,
gnu/packages/statistics.scm: Adjust module imports.
2019-12-02 15:25:17 +01:00
ca7c365312
gnu: python-scikit-image: Move to (gnu packages python-science).
...
* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image):
Move these two from here...
* gnu/packages/python-science.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-12-02 15:25:12 +01:00
5fbdd917b7
gnu: python-pillow: Update to 6.2.1.
...
* gnu/packages/python-xyz.scm (python-pillow): Update to 6.2.1.
2019-12-02 15:12:50 +02:00
Ricardo Wurmus
Björn Höfling
Hartmut Goebel
Jan Nieuwenhuizen
Mark H Weaver
Clément Lassieur
Pierre Neidhardt
Tobias Geerinckx-Rice
Efraim Flashner
Marius Bakke
Leo Famulari
Danny Milosavljevic
Timotej Lazar
Maxim Cournoyer
Brett Gilio
Eric Bavier
Andreas Enge
Alex Griffin