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26012 Commits (60c8a14b8a2dddf9ef00624fcd9b607863987e56)

Author SHA1 Message Date
Ricardo Wurmus 33dc54b08c
gnu: Move date/time packages from python.scm to time.scm.
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
2017-11-18 12:45:19 +01:00
Ricardo Wurmus 762b5a89c2
gnu: Move more testing packages from python.scm to check.scm.
* gnu/packages/python.scm (python-flexmock, python2-flexmock,
python-freezegun, python2-freezegun, python-flaky, python2-flaky): Move from
here...
* gnu/packages/check.scm: ...to here.
2017-11-18 12:45:19 +01:00
Julien Lepiller a0837294ab
gnu: Add java-plexus-container-default.
* gnu/packages/java.scm (java-plexus-container-default): New variable.
2017-11-18 11:30:25 +01:00
Julien Lepiller b51df3ca6f
gnu: Add java-plexus-archiver.
* gnu/packages/java.scm (java-plexus-archiver): New variable.
2017-11-18 11:30:15 +01:00
Julien Lepiller 0858b9dc9d
gnu: Add java-plexus-io.
* gnu/packages/java.scm (java-plexus-io): New variable.
2017-11-18 11:30:13 +01:00
Julien Lepiller 0726d4ea7c
gnu: Add java-plexus-container-default-bootstrap.
* gnu/packages/java.scm (java-plexus-container-default-bootstrap): New
variable.
2017-11-18 11:30:10 +01:00
Julien Lepiller b80027e5e7
gnu: Add java-tukaani-xz.
* gnu/packages/java.scm (java-tukaani-xz): New variable.
2017-11-18 11:30:08 +01:00
Julien Lepiller 78745d331d
gnu: Add java-geronimo-xbean-reflect.
* gnu/packages/java.scm (java-geronimo-xbean-reflect): New variable.
2017-11-18 11:30:05 +01:00
Julien Lepiller 0b54e190ab
gnu: Add java-jdom.
* gnu/packages/java.scm (java-jdom): New variable.
2017-11-18 11:30:03 +01:00
Julien Lepiller 2caf873e86
gnu: Add java-log4j-1.2-api.
* gnu/packages/java.scm (java-log4j-1.2-api): New variable.
2017-11-18 11:30:01 +01:00
Julien Lepiller dfef4231f7
gnu: Add java-log4j-core.
* gnu/packages/java.scm (java-log4j-core): New variable.
2017-11-18 11:29:58 +01:00
Julien Lepiller 46c6905a22
gnu: Add java-kafka-clients.
* gnu/packages/java.scm (java-kafka-clients): New variable.
2017-11-18 11:29:55 +01:00
Julien Lepiller 5aa2f3f44b
gnu: Add java-commons-beanutils.
* gnu/packages/java.scm (java-commons-beanutils): New variable.
2017-11-18 11:29:53 +01:00
Julien Lepiller 229a9864b6
gnu: Add java-commons-collections.
* gnu/packages/java.scm (java-commons-collections): New variable.
2017-11-18 11:29:51 +01:00
Julien Lepiller 51263ff5d2
gnu: Add java-commons-csv.
* gnu/packages/java.scm (java-commons-csv): New variable.
2017-11-18 11:29:48 +01:00
Julien Lepiller 217b20e4db
gnu: Add java-jeromq.
* gnu/packages/java.scm (java-jeromq): New variable.
2017-11-18 11:29:45 +01:00
Julien Lepiller 3ff47c6665
gnu: Add java-mail.
* gnu/packages/java.scm (java-mail): New variable.
2017-11-18 11:29:42 +01:00
Julien Lepiller 5fb3e82217
gnu: Add java-jboss-jms-api-spec.
* gnu/packages/java.scm (java-jboss-jms-api-spec): New variable.
2017-11-18 11:29:38 +01:00
Julien Lepiller 965ba54be0
licenses: Add cddl1.1.
* guix/licenses.scm (cddl1.1): New variable.
2017-11-18 11:29:36 +01:00
Julien Lepiller 823997e969
gnu: Add java-iq80-snappy.
* gnu/packages/compression.scm (java-iq80-snappy): New variable.
2017-11-18 11:29:34 +01:00
Julien Lepiller cea8346688
gnu: Add java-snappy.
* gnu/packages/compression.scm (java-snappy): New variable.
2017-11-18 11:29:31 +01:00
Julien Lepiller 9869bb1296
gnu: Add bitshuffle.
* gnu/packages/compression.scm (bitshuffle): New variable.
2017-11-18 11:29:25 +01:00
Ricardo Wurmus 82af2c2f0f
build-system: texlive: Only make a union of directories.
* guix/build/texlive-build-system.scm (configure): Filter the input
directories to ensure that source tarballs are excluded.
2017-11-18 11:18:42 +01:00
Ricardo Wurmus c5a8ecb6d3
gnu: Remove duplicates from (gnu packages tex).
* gnu/packages/tex.scm (texlive-latex-hyperref, texlive-latex-fancyvrb):
Remove duplicates.
2017-11-18 11:18:41 +01:00
Ricardo Wurmus 261b38a978
gnu: r-genomeinfodbdata: Update to 0.99.1.
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 0.99.1.
2017-11-18 11:18:41 +01:00
Ricardo Wurmus 592f4a9434
gnu: r-go-db: Update to 3.5.0.
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.5.0.
2017-11-18 11:18:41 +01:00
Ricardo Wurmus e4664290ce
gnu: r-org-ce-eg-db: Update to 3.5.0.
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
Ricardo Wurmus 19fc299f68
gnu: r-org-dm-eg-db: Update to 3.5.0.
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
Ricardo Wurmus f3569f5218
gnu: r-org-mm-eg-db: Update to 3.5.0.
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.5.0.
2017-11-18 11:18:40 +01:00
Ricardo Wurmus 57dc9b58db
gnu: r-genomationdata: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.10.0.
2017-11-18 11:18:39 +01:00
Ricardo Wurmus 9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics).
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
2017-11-18 11:18:39 +01:00
Ricardo Wurmus 9c2d0a0369
gnu: Remove duplicate from (gnu packages gnupg).
* gnu/packages/gnupg.scm (perl-gnupg-interface): Remove duplicate.
2017-11-18 11:18:39 +01:00
Ricardo Wurmus 90dbd984f8
gnu: Remove duplicate from (gnu packages bioinformatics).
* gnu/packages/bioinformatics.scm (r-annotationfilter): Remove duplicate.
2017-11-18 11:18:39 +01:00
Ricardo Wurmus c151b0b633
gnu: Remove duplicate from (gnu packages cran).
* gnu/packages/cran.scm (r-bbmle): Remove duplicate.
2017-11-18 11:18:38 +01:00
Ricardo Wurmus 4982d0ac41
gnu: Remove duplicates from (gnu packages java).
* gnu/packages/java.scm (java-commons-net, java-asm): Remove duplicates.
2017-11-18 11:18:38 +01:00
Ricardo Wurmus 676507e388
gnu: r-org-hs-eg-db: Clarify description.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db)[description]: Clarify.
2017-11-18 11:18:38 +01:00
Ricardo Wurmus d595fed33d
gnu: r-org-hs-eg-db: Update to 3.5.0.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.5.0.
2017-11-18 11:18:37 +01:00
Ricardo Wurmus ccedfd3a43
gnu: r-org-hs-eg-db: Remove duplicate package definition.
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Remove duplicate variable.
2017-11-18 11:18:37 +01:00
Mark H Weaver b9f23702eb
gnu: linux-libre: Remove Tegra DRM from arm configuration.
The code fails to compile on armhf using our configuration.
See <https://patchwork.kernel.org/patch/9688615/> for details.

* gnu/packages/aux-files/linux-libre/4.14-arm.conf: Remove Tegra DRM support.
2017-11-18 04:31:32 -05:00
Mark H Weaver f10120d40b
gnu: linux-libre: Remove Nouveau from arm configuration.
The Nouveau code fails to compile on armhf with our configuration.

* gnu/packages/aux-files/linux-libre/4.14-arm.conf: Disable Nouveau.
2017-11-18 04:30:45 -05:00
Ricardo Wurmus b3b07df403
gnu: dino: Update to 0.0-2-2a514d096.
* gnu/packages/messaging.scm (dino): Update to 0.0-2-2a514d096.
[source]: Do not fetch libsignal-protocol-c submodule.
[arguments]: Add phase "unpack-sources" to unpack our sources for
libsignal-protocol-c.
[native-inputs]: Add "libsignal-protocol-c-source".
2017-11-18 07:44:27 +01:00
Leo Famulari d8e257113c
build-system/go: Don't let Go executables refer to the Go compiler.
* guix/build/go-build-system.scm (remove-store-reference, remove-go-references):
New procedures.
(%standard-phases): Add 'remove-go-references' phase.
* guix/build-system/go.scm (go-build): Add allow-go-reference? key.
2017-11-17 18:25:20 -05:00
Leo Famulari 25811886f1
gnu: vim: Update to 8.0.1300.
* gnu/packages/vim.scm (vim): Update to 8.0.1300.
2017-11-17 18:25:16 -05:00
Ricardo Wurmus 40f372af3e
gnu: tuxguitar: Build with icedtea-8.
* gnu/packages/music.scm (tuxguitar)[arguments]: Use icedtea-8.
2017-11-17 23:18:50 +01:00
Ricardo Wurmus 8710d4dd73
gnu: java-swt: Update to 4.7.1a.
* gnu/packages/java.scm (java-swt): Update to 4.7.1a.
[arguments]: Build with icedtea-8.
[inputs]: Remove "icecat".
2017-11-17 23:18:50 +01:00
Ricardo Wurmus d72f76df11
gnu: eolie: Update to 0.9.12.
* gnu/packages/gnome.scm (eolie): Update to 0.9.12.
[inputs]: Add python-dateutil.
2017-11-17 23:18:50 +01:00
Marco van Hulten 45eee2dd62
doc: Write "file system" instead of "partition" as appopriate.
* doc/guix.texi (Preparing for Installation): Write "file system" instead
of "partition" as appopriate.
2017-11-17 23:04:52 +01:00
Ricardo Wurmus a8714bf680
gnu: Move database packages from python.scm to databases.scm.
* gnu/packages/python.scm (python-ccm, python2-ccm, python2-pysqlite,
python-sqlalchemy, python2-sqlalchemy, python-sqlalchemy-utils,
python2-sqlalchemy-utils, python-alembic, python2-alembic,
python-pickleshare, python2-pickleshare, python-apsw, python2-apsw,
python2-neo4j-driver, python2-py2neo, python-psycopg2, python2-psycopg2,
python-sadisplay, python2-sadisplay, python-mysqlclient,
python2-mysqlclient, python-hiredis, python2-hiredis, python-fakeredis,
python2-fakeredis, python-redis, python2-redis, python-rq, python2-rq,
python-trollius-redis, python2-trollius-redis, python-sqlparse,
python2-sqlparse, python-sql, python2-sql): Move from here...
* gnu/packages/databases.scm: ...to here.
* gnu/packages/tryton.scm,
gnu/packages/python-web.scm,
gnu/packages/nutrition.scm,
gnu/packages/medical.scm: Adjust accordingly.
2017-11-17 22:36:27 +01:00
Ricardo Wurmus be6eb2f1e6
gnu: python-scikit-learn: Move from python.scm to machine-learning.scm.
* gnu/packages/python.scm (python-scikit-learn, python2-scikit-learn): Move
from here...
* gnu/packages/machine-learning.scm: ...to here.
2017-11-17 22:36:26 +01:00
Ricardo Wurmus 98c6a02573
gnu: Move more web packages from python.scm to python-web.scm.
* gnu/packages/python.scm (python-pastescript, python2-pastescript,
python-paste, python2-paste, python-werkzeug, python2-werkzeug, python-bottle,
python2-bottle, python-wtforms, python2-wtforms): Move from here...
* gnu/packages/python-web.scm: ...to here.
2017-11-17 22:36:26 +01:00