a68e586097
gnu: diamond: Update to 0.9.13.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
2017-11-14 08:25:43 +10:00
5ccde2079e
gnu: Move test packages from perl to perl-check.
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* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
2017-11-13 23:03:01 +01:00
587d175266
gnu: ghc-tls: Move to (gnu packages tls).
...
* gnu/packages/haskell.scm (ghc-tls): Move from here...
* gnu/packages/tls.scm (ghc-tls): ...to here.
* gnu/packages/haskell-web.scm: Use (gnu packages tls).
2017-11-13 18:40:55 +01:00
f24eba89f4
gnu: Move crypto packages from haskell to haskell-crypto.
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* gnu/packages/haskell.scm (ghc-asn1-types, ghc-asn1-encoding, ghc-asn1-parse,
ghc-crypto-api, ghc-crypto-api-tests, ghc-cryptohash, ghc-cryptohash-md5,
ghc-cryptohash-sha1, ghc-cryptonite, ghc-digest, ghc-entropy, ghc-pem,
ghc-puremd5, ghc-sha, ghc-x509, ghc-x509-store, ghc-x509-validation,
ghc-x509-system): Move variables to ...
* gnu/packages/haskell-crypto.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/haskell-web.scm,
gnu/packages/version-control.scm: Include haskell-crypto module.
2017-11-13 18:36:51 +01:00
44b7374a22
gnu: Move web packages from haskell to haskell-web.
...
* gnu/packages/haskell.scm (ghc-tagsoup, ghc-cookie, ghc-http-types, ghc-http,
ghc-http-client, ghc-http-client-tls, ghc-http-date, ghc-http2,
ghc-http-conduit, ghc-wai, ghc-wai-logger, ghc-wai-extra, ghc-wai-conduit,
ghc-warp, ghc-warp-tls, ghc-xss-sanitize, ghc-css-text, ghc-mime-types,
ghc-html, ghc-xhtml, ghc-blaze-html, ghc-aeson, ghc-aeson-pretty,
ghc-aeson-qq, ghc-multipart): Move variables to ...
* gnu/packages/haskell-web.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-web module.
2017-11-13 18:12:37 +01:00
a06b9b5007
gnu: Move testing packages from haskell to haskell-check.
...
* gnu/packages/haskell.scm (ghc-clock-bootstrap, ghc-tasty-ant-xml,
ghc-tasty-smallcheck, ghc-tasty-quickcheck, ghc-tasty-golden, ghc-tasty,
ghc-tasty-hunit, ghc-tasty-kat, ghc-tasty-th, ghc-tasty-rerun,
ghc-quickcheck-instances, ghc-quickcheck-unicode, ghc-quickcheck-io,
ghc-quickcheck, ghc-test-framework, ghc-test-framework-hunit,
ghc-test-framework-quickcheck2, ghc-test-framework-th, ghc-hunit,
hspec-discover, ghc-hspec-core, ghc-hspec-meta, ghc-hspec, ghc-hspec-contrib,
ghc-hspec-expectations): Move variables to ...
* gnu/packages/haskell-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/haskell.scm,
gnu/packages/idris.scm,
gnu/packages/version-control.scm,
gnu/packages/wm.scm: Include haskell-check module.
2017-11-13 18:12:27 +01:00
d4735e8c65
gnu: cd-hit: Update source tarball hash.
...
* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
2017-11-13 16:02:35 +01:00
62f0806f4c
Revert "gnu: totem: Enable parallel build."
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This reverts commit e5f748a6c0
2017-11-13 07:47:23 -05:00
a0fea77dbb
services: guix: Remove dependency on 'lsof'.
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This is a followup to b8f59cdc20e9d83ce63523ef917e95fcee07f134:
'list-runtime-roots' no longer depends on 'lsof'.
* gnu/services/base.scm (<guix-configuration>)[lsof]: Remove.
(guix-shepherd-service): Adjust accordingly.
* doc/guix.texi (Base Services): Adjust accordingly.
* gnu/system.scm (%base-packages): Remove LSOF.
2017-11-13 11:36:28 +01:00
b918473189
gnu: guix: Update snapshot.
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* gnu/packages/package-management.scm (guix): Update to ff23b47
2017-11-13 11:31:27 +01:00
ff23b47dbe
tests: 'guix-gc.sh' passes even when 'out' or 'drv' are defined as env vars.
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This fixes a test failure exhibited by
fb17a89912
2017-11-13 10:10:13 +01:00
6b7490b340
gnu: ibus: Update to 1.5.17.
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* gnu/packages/ibus.scm (ibus): Update to 1.5.17.
2017-11-13 10:19:26 +02:00
ce12b31157
gnu: ibus: Enable wayland support.
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* gnu/packages/ibus.scm (ibus)[arguments]: Add configure flag to enable
wayland support.
[inputs]: Add wayland.
2017-11-13 10:19:26 +02:00
f35bb0711c
gnu: libsoup: Update to 2.60.2.
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* gnu/packages/gnome.scm (libsoup): Update to 2.60.2.
2017-11-12 21:20:24 -05:00
856b68bda9
list-runtime-roots: Ignore PIDs we cannot access.
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This allows running as non-root.
Fixes a regression introduced in b8f59cdc20
2017-11-12 23:53:12 +01:00
d0b87779f0
download: Use HTTPS for the first ImageMagick mirror.
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* guix/download.scm (%mirrors)[imagemagick]: Use HTTPS for <sunsite.icm.edu.pl>.
2017-11-12 17:50:01 -05:00
ecc585711e
download: Try FTP servers last.
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* guix/download.scm (%mirrors)[savannah, kernel.org, apache, xorg, imagemagick]:
Re-arrange so that FTP is last.
2017-11-12 17:50:01 -05:00
c0d1fa64d0
gnu: imagemagick: Update to 6.9.9-23.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-23.
2017-11-12 17:50:01 -05:00
fb17a89912
list-runtime-roots: Canonicalize store items.
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Looking at 'addAdditionalRoots' in libstore/gc.cc, it looks like it
should always have been this way. In practice it probably doesn't make
much of a difference.
* nix/scripts/list-runtime-roots.in (canonicalize-store-item): New
procedure.
<top level>: Use it.
2017-11-12 22:42:17 +01:00
b8f59cdc20
list-runtime-roots: Do not use 'lsof'.
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This makes things a bit faster (0.8s instead of 1.4s on my laptop).
* nix/scripts/list-runtime-roots.in (lsof-roots): Remove.
(proc-fd-roots): Return the empty list when 'scandir' returns #f.
(referenced-files): New procedure.
Use it at the top level.
2017-11-12 22:42:17 +01:00
6a98b9f34e
doc: Better explain GC roots.
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Fixes <https://bugs.gnu.org/24194 >.
Reported by J. Eppler <j.eppler@openmailbox.org>.
* doc/guix.texi (Invoking guix-daemon): Add index entries for GC roots.
Add xref to "Invoking guix gc".
(Invoking guix gc): Add the string "GC roots"; mention /var/guix/gcroots.
(Additional Build Options): Add index entries. Better explain --root.
(Invoking guix environment): Add xref to "Invoking guix gc".
2017-11-12 22:42:17 +01:00
2560aa7adb
gnu: Remove unrar.
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This package is abandoned upstream and contains serious bugs:
http://seclists.org/oss-sec/2017/q3/329
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14120
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14121
https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-14122
* gnu/packages/compression.scm (unrar): Remove variable.
2017-11-12 16:17:08 -05:00
8420c7a356
gnu: linux-libre: Change URL to HTTPS.
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* gnu/packages/linux.scm (linux-libre): Change URL to HTTPS.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-11-12 15:46:44 -05:00
1650cf9284
gnu: mupdf: Unbundle mujs.
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* gnu/packages/pdf.scm (mupdf)[source]: Remove bundled mujs.
[inputs]: Add mujs.
2017-11-12 19:39:21 +02:00
89ba894eb3
gnu: Add mujs.
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* gnu/packages/javascript.scm (mujs): New variable.
2017-11-12 19:39:20 +02:00
76379dcace
gnu: mupdf: Use https.
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* gnu/packages/pdf.scm (mupdf)[source]: Use https.
[home-page]: Same.
2017-11-12 19:39:20 +02:00
31f248fa2c
gnu: pdf.scm: Arrange modules alphabetically.
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* gnu/packages/pdf.scm: Arrange modules alphabetically.
2017-11-12 19:39:17 +02:00
b07bfd06ee
gnu: lash: Don't build static libraries.
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* gnu/packages/audio.scm (lash)[arguments]: Add configure-flag to
disable static libraries.
2017-11-12 12:04:49 +02:00
44df780768
gnu: lash: Don't build lashd.
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This fixes bug#28174.
* gnu/packages/audio.scm (lash)[arguments]: Add phase to skip building lashd.
2017-11-12 12:04:46 +02:00
c7b433de47
gnu: glib-networking: Update to 2.54.1.
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* gnu/packages/gnome.scm (glib-networking): Update to 2.54.1.
2017-11-12 01:17:10 -05:00
1e2a36e1b0
gnu: ffmpeg: Reduce the size of the closure.
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* gnu/packages/video.scm (ffmpeg)[arguments]: Add new configure flags to
disable the html man pages and the static libraries.
2017-11-12 07:11:29 +02:00
7e0d513fb9
gnu: mupdf: Use Texinfo for the description.
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* gnu/packages/pdf.scm (mupdf)[description]: Use Texinfo to mark up the
description.
2017-11-12 07:11:25 +02:00
b7ca42aa99
gnu: w3m: Find an editor in the environment.
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* gnu/packages/w3m.scm (w3m)[arguments]: Pass an empty value for --with-editor
in #:configure-flags.
[source]: Use git-file-name.
2017-11-11 23:04:39 -05:00
882d921344
gnu: mupdf: Actually fix CVE-2017-15587.
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The original fix could be removed by an optimizing compiler.
* gnu/packages/patches/mupdf-CVE-2017-15587.patch: Revise patch.
2017-11-11 22:34:24 -05:00
07cc9245e6
gnu: libusb-compat: Use the same home page as libusb.
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* gnu/packages/libusb.scm (libusb-compat)[home-page]: Update.
2017-11-12 03:25:49 +01:00
5ade9bc769
gnu: fcgi: Fix typo in description.
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* gnu/packages/web.scm (fcgi)[description]: Fix typo.
2017-11-12 03:25:48 +01:00
d1b5043947
gnu: fcgi: Use archived home page fork.
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* gnu/packages/web.scm (fcgi)[home-page]: Use archived version.
2017-11-12 03:25:48 +01:00
9c2917f9e7
gnu: lynx: Use new home page.
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* gnu/packages/web-browsers.scm (lynx)[home-page]: Update.
2017-11-12 03:25:47 +01:00
6862e4bfe7
gnu: perl-mime-types: Update to 2.14.
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* gnu/packages/perl.scm (perl-mime-types): Update to 2.14.
2017-11-12 03:25:47 +01:00
f9035ef213
gnu: mailutils: Update to 3.4.
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* gnu/packages/mail.scm (mailutils): Update to 3.4.
2017-11-11 23:21:54 +01:00
cda2e2c719
gnu: emacs-emms: Update to 4.4.
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* gnu/packages/emacs.scm (emms): Update to 4.4.
2017-11-11 23:21:54 +01:00
327df26fbf
gnu: nyacc: Update to 0.82.4.
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* gnu/packages/mes.scm (nyacc): Update to 0.82.4.
2017-11-11 23:11:04 +01:00
b1488c7653
git: Check whether 'clone-init-options' is defined.
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This is a followup to 195f0d05c3
2017-11-11 20:09:25 +01:00
4564782c3d
gnu: nvi: Build with support for Unicode text.
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* gnu/packages/nvi.scm (nvi)[arguments]: Pass '--enable-widechar'
to #:configure-flags.
2017-11-11 12:00:37 -05:00
ae0307f7c2
tests: Adjust to new unbound-variable error message.
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This is a followup to dc856223f5
2017-11-11 15:33:47 +01:00
4ad3a3f995
tests: Refer to "time@1.8".
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This is a followup to dd00e0919f
2017-11-11 15:33:04 +01:00
65a19abf3f
download: Work around more bogus HTTP handling in Guile 2.2 <= 2.2.2.
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Reported by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00190.html >.
* guix/build/download.scm (guile-2.2) [write-request-line]: Backport
Guile commit 6ad28ae3bc6a6d9e95ab7d70510d12c97673a143.
2017-11-11 15:20:02 +01:00
56f35d92f5
gnu: lvm2: Update to 2.02.176.
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* gnu/packages/linux.scm (lvm2): Update to 2.02.176.
2017-11-11 07:40:55 +01:00
ec03062171
gnu: libstaroffice: Update to 0.0.5.
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* gnu/packages/libreoffice.scm (libstaroffice): Update to 0.0.5.
2017-11-11 07:18:34 +01:00
45d5c80253
gnu: libvisio: Update to 0.1.6.
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* gnu/packages/libreoffice.scm (libvisio): Update to 0.1.6.
[source](patches): Remove.
* gnu/packages/patches/libvisio-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-11 07:15:39 +01:00
Ben Woodcroft
Ricardo Wurmus
Kei Kebreau
Ludovic Courtès
Efraim Flashner
Leo Famulari
Rutger Helling
Tobias Geerinckx-Rice
Jan Nieuwenhuizen
Marius Bakke