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Author SHA1 Message Date
Liliana Marie Prikler 60c97924e9
gnu: emacs-pdf-tools: Build autoloads before installing them. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools)[#:phases]: Move
‘emacs-make-autoloads’ after ‘enter-lisp-dir’.
 2023-11-01 20:44:29 +01:00
Liliana Marie Prikler ec7d68bcef
gnu: emacs-eweouz: Build autoloads before installing them. 
* gnu/packages/emacs-xyz.scm (emacs-eweouz)[#:phases]: Move
‘emacs-make-autoloads’ after ‘enter-lisp-dir’.
 2023-11-01 20:44:29 +01:00
Liliana Marie Prikler 95fec09d4b
gnu: emacs-libgit: Adjust to changes in emacs-build-system. 
* gnu/packages/emacs-xyz.scm (emacs-libgit)[#:phases]: Move ‘make-autoloads’
after ‘unpack’.  Drop ‘enable-autoloads-compilation’.  Move ‘emacs-build’
after ‘install’.
 2023-11-01 20:44:29 +01:00
Liliana Marie Prikler 927eee08de
gnu: emacs-geiser-chez: Process autoloads in-tree. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-chez)[#:phases]<patch-autoloads>:
Resolve "geiser-chez-autoloads.el" in the current working directory.
 2023-11-01 20:44:29 +01:00
Liliana Marie Prikler 32446edab0
gnu: emacs-geiser-racket: Process autoloads in-tree. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-racket)[#:phases]<patch-autoloads>:
Resolve "geiser-racket-autoloads.el" in the current working directory.
 2023-11-01 20:44:29 +01:00
Liliana Marie Prikler 9335307b91
gnu: emacs-geiser-gauche: Process autoloads in-tree. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-gauche)[#:phases]<patch-autoloads>:
Resolve "geiser-gauche-autoloads.el" in the current working directory.
 2023-11-01 20:44:29 +01:00
Liliana Marie Prikler d9d7259764
gnu: emacs-geiser-guile: Process autoloads in-tree. 
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile)[#:phases]<patch-autoloads>:
Resolve "geiser-guile-autoloads.el" in the current working directory.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler b520ad2781
gnu: uim: Keep Emacs files in subdirectory. 
* gnu/packages/xorg.scm (uim)[arguments]<#:configure-flags>: Drop
“--with-lispdir”.
<#:phases>: Drop ‘fix-install-path’.  Adjust ‘make-autoloads’ accordingly.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler 5a780b1b1a
gnu: guile-wisp: Build autoloads before installing them. 
* gnu/packages/guile-xyz.scm (guile-wisp)[#:phases]: Move ‘make-autoloads’
after ‘unpack’.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler c36a91284b
gnu: crm114: Adjust to changes in emacs-build-system. 
* gnu/packages/mail.scm (crm114)[#:phases]: Move ‘make-autoloads’ after
‘unpack’.  Delete ‘enable-autoloads-compilation’.  Adjust ordering of other
phases accordingly.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler a5eb6fa52f
gnu: emacs-mew: Adjust to changes in emacs-build-system. 
* gnu/packages/mail.scm (emacs-mew)[arguments]: Only let-bind icon-dir.
<#:modules>: Add (guix build emacs-build-system).
<#:imported-modules>: Use %emacs-build-system-modules.
<#:configure-flags>: Set elispdir with emacs:elpa-directory.
<#:phases>: Move ‘generate-autoloads’ after ‘unpack’.
Generate the autoloads locally.
Also enable compilation.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler d1b98d7c92
gnu: translate-shell: Compile emacs bytecode. 
* gnu/packages/dictionaries.scm (translate-shell)[#:phases]: Add ‘emacs-build’.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler 84f4105877
gnu: translate-shell: Build autoloads before installing them. 
* gnu/packages/dictionaries.scm (translate-shell)[#:phases]: Move
‘emacs-make-autoloads’ before ‘unpack’.  Drop  ‘emacs-autoload-compilation’.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler 61832f00a1
gnu: skktools: Build autoloads before installing them. 
* gnu/packages/language.scm (skktools)[#:phases]: Move ‘make-autoloads’ after ‘unpack’.
 2023-11-01 20:44:28 +01:00
Liliana Marie Prikler 5de8779ad9
guix: emacs-build-system: Process package source in build tree. 
* guix/build/emacs-build-system.scm (ensure-package-description)
(patch-el-files, make-autoloads): Operate on the current working directory,
either implicitly, or through (getcwd).
(enable-autoloads-compilation): Deleted variable, logic moved into
make-autoloads.
(%standard-phases): Adjust accordingly.
 2023-11-01 20:44:28 +01:00
Ricardo Wurmus 0647f308b4
gnu: r-rjava: Use OpenJDK 11. 
See https://github.com/s-u/rJava/issues/307.

* gnu/packages/cran.scm (r-rjava)[arguments]: Use search-input-file.
[inputs]: Replace icedtea-8 with openjdk11.

Change-Id: I9e67210f1bfd585fb53845dad55a56a639a5d806
 2023-11-01 19:33:38 +01:00
Maxim Cournoyer a96f1c1bc0
teams.scm: Add file-local variable prop line for the mode. 
This tells Emacs to use the scheme-mode to edit the file.

* etc/teams.scm (mode): New file-local variable.

Change-Id: I9a48f552e831317402673d95cf6c1de506d388b5
 2023-11-01 12:24:29 -04:00
Julien Lepiller c95104c2e9
doc: contributiong: Fix ref usage. 
Previous usage renders as "see See Teams".

* doc/contributing.texi: Fix ref usage.

Change-Id: I97a91697ecb87d07cc3c962a79d87dd290a70a7c
 2023-11-01 17:20:17 +01:00
Florian Pelz 938a47c86d
nls: Update translations. 
Change-Id: I432aec0ea31ead192d6444c96dc42038f5c7ab9a
 2023-10-31 23:01:37 +01:00
Simon Tournier 3991d9e4d9
Revert "gnu: lvm2: Remove systemd rule." 
This reverts commit c0895371c5, which does not
correctly fix the issue, as reported by Josselin Poiret <dev@jpoiret.xyz> in
<https://issues.guix.gnu.org/issue/66586#6>.
 2023-10-31 22:15:33 +01:00
Afkhami, Navid b963bf6b1d
gnu: python-baltica: Add missing R inputs. 
* gnu/packages/bioinformatics.scm (python-baltica)[propagated-inputs]: Add
r-biocmanager, r-dplyr, r-genomicranges, r-here, r-openxlsx, r-optparse,
r-readr, r-rsamtools, r-stringr, r-tidyr, r-upsetr, and r-yaml.
[description]: Add an extra space after a period.

Change-Id: I8c1bb556048b406b95e081155a46da17a6be5676
 2023-10-31 22:03:24 +01:00
Ricardo Wurmus 4254269ad5
gnu: r-logspline: Update to 2.1.21. 
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.21.

Change-Id: Ib4ec6124282851bcc52eb87f7e30027e801f0531
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus 0858b9c472
gnu: r-withr: Update to 2.5.2. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.2.

Change-Id: Ie4265bc4a6d9c54e3f64ab12ae0d14c716b4e03f
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus 90a8594c7b
gnu: r-checkmate: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-checkmate): Update to 2.3.0.

Change-Id: I0599e3a4e174cc311c37d7c334087eda15deafc1
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus 76a12b07d1
gnu: r-dbplyr: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 2.4.0.

Change-Id: I8cf5c1b47b47a41b606e76d0b5e14425946f0903
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus e2d4dd5e1c
gnu: r-knitr: Update to 1.45. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.45.

Change-Id: I1317366a0041f29b284e24d056734498f9d35cd7
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus 4f4ab05dc4
gnu: r-strex: Update to 1.6.1. 
* gnu/packages/cran.scm (r-strex): Update to 1.6.1.

Change-Id: Id37ef19901a3548128816e2677148405b5845297
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus a14e534dbd
gnu: r-seuratobject: Update to 5.0.0. 
* gnu/packages/cran.scm (r-seuratobject): Update to 5.0.0.
[propagated-inputs]: Add r-generics, r-lifecycle, and r-spam.

Change-Id: I8486d42c1f9d3e5f4b9fc091a4d4aab7b1c803b6
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus 75db05d7db
gnu: r-rfast: Update to 2.0.9. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.9.
[propagated-inputs]: Add r-rcppparallel.

Change-Id: I551a2b1745b937454b5aad99f4620839f9a89902
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus d0013cb066
gnu: r-spatstat: Update to 3.0-7. 
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-7.

Change-Id: I8c54279b92acb7532b1050613a60ba2e96c115eb
 2023-10-31 21:57:59 +01:00
Ricardo Wurmus 12167e57e8
gnu: r-spatstat-linnet: Update to 3.1-3. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-3.

Change-Id: I7f1dadd2e8fecf03cbde3c56de3a3384ba8cf24d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 8638f87510
gnu: r-posterior: Update to 1.5.0. 
* gnu/packages/cran.scm (r-posterior): Update to 1.5.0.

Change-Id: I3fa7adca749efcbe0d8b6ab0f707e70a1e895d2d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus bd15e8babf
gnu: r-adagio: Update to 0.9.2. 
* gnu/packages/cran.scm (r-adagio): Update to 0.9.2.

Change-Id: I2131b973194fcf710fed1ac4c425717278269308
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 199f6a9967
gnu: r-rintrojs: Update to 0.3.3. 
* gnu/packages/cran.scm (r-rintrojs): Update to 0.3.3.

Change-Id: I184740e9bd1ed8d087c2985d08b12f4fe31d72b7
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 8aafa8bd45
gnu: r-sampling: Update to 2.10. 
* gnu/packages/cran.scm (r-sampling): Update to 2.10.

Change-Id: I7a3407c77fb71a8a4355415beeee09edc2a8908c
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 8ab1ea6850
gnu: r-polspline: Update to 1.1.24. 
* gnu/packages/cran.scm (r-polspline): Update to 1.1.24.

Change-Id: I323fc3b50c1d215d749cd814a684463810e4bfc4
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus d034d0a1a0
gnu: r-grimport2: Update to 0.3-1. 
* gnu/packages/cran.scm (r-grimport2): Update to 0.3-1.

Change-Id: I6b7de08f4d24a3398e8b788fbe726792ac38a59a
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 2fec2b0a7a
gnu: r-gridpattern: Update to 1.1.1. 
* gnu/packages/cran.scm (r-gridpattern): Update to 1.1.1.

Change-Id: I63bc1df4fc6f8f5e9931a6a82db68df0e933a1cb
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 05e2f170f7
gnu: r-performance: Update to 0.10.8. 
* gnu/packages/cran.scm (r-performance): Update to 0.10.8.

Change-Id: Ic0c7a1f1402ae5a63bf433fd2f874e24eab5a216
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus d7244ece08
gnu: r-wrs2: Update to 1.1-5. 
* gnu/packages/cran.scm (r-wrs2): Update to 1.1-5.
[propagated-inputs]: Remove r-mc2d.

Change-Id: I0346e018b401143b4f9cf65845cf4d3b210ed54b
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 62ad4b2566
gnu: r-rbibutils: Update to 2.2.16. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.16.

Change-Id: I188dddbb7fa03f43574e50d43f741c5398e7c331
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus d941cec521
gnu: r-lambertw: Update to 0.6.9. 
* gnu/packages/cran.scm (r-lambertw): Update to 0.6.9.

Change-Id: Ia36a96ddd78585768b88ab662d5c5ba31aa40744
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus e11a490138
gnu: r-mbess: Update to 4.9.3. 
* gnu/packages/cran.scm (r-mbess): Update to 4.9.3.

Change-Id: I8ada8e1a56b7497145409de82865d5d9d83da6e3
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 8e44a14be6
gnu: r-poorman: Update to 0.2.7. 
* gnu/packages/cran.scm (r-poorman): Update to 0.2.7.

Change-Id: I9c23bd2bbba0eb6f6b2b6b6ac1cc11524b5c6980
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 03c1f71501
gnu: r-consort: Update to 1.2.1. 
* gnu/packages/cran.scm (r-consort): Update to 1.2.1.

Change-Id: I28d1749044a38f9a9144eeb5675d6607bf973c53
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus 221b9422fc
gnu: r-abn: Update to 3.0.2. 
* gnu/packages/bioconductor.scm (r-abn): Update to 3.0.2.

Change-Id: Icf3de104b61e79b9a7c9fbfecb0e071d6e46ef9d
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus a9ee95aec1
gnu: r-htmltable: Update to 2.4.2. 
* gnu/packages/cran.scm (r-htmltable): Update to 2.4.2.
[arguments]: Replace minified JavaScript.
[native-inputs]: Add esbuild and js-jquery.

Change-Id: Iacc17957c2a773ca651d3a9e980a3e4281874829
 2023-10-31 21:57:58 +01:00
Ricardo Wurmus dfd3934b6b
gnu: r-rsqlite: Update to 2.3.2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.2.

Change-Id: I97532cd5834e0aad84d7072f7f93bae612ad93bf
 2023-10-31 21:57:58 +01:00
Efraim Flashner e82b700228
gnu: b43-tools: Use make-flags. 
* gnu/packages/firmware.scm (b43-tools)[arguments]: Add make-flags.
Use make-flags in custom 'build and 'install phases.  Remove trailing #t
from phases.

Change-Id: I8576351ecd571d191598943a2d143ab3e3e9da09
 2023-10-31 22:32:53 +02:00
Maxim Cournoyer d96a9c7473
gnu: python-radio-beam: Update to 0.3.6. 
* gnu/packages/astronomy.scm (python-radio-beam): Update to 0.3.6.
[native-inputs]: Add python-setuptools-scm.

Change-Id: I3be87a22b701119699d37104f8df4f3fab44d0c8
 2023-10-31 13:15:25 -04:00