64213a0b66
deploy: Fix error message.
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* guix/scripts/deploy.scm (guix-deploy): Fix error message.
2022-10-04 16:46:33 +04:00
ba84c8c448
gnu: augustus: Update to 3.2.0.
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* gnu/packages/games.scm (augustus): Update to 3.2.0.
[inputs]: Add expat.
[snippet]: Unbundle it. Drop trailing #t.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:43 +02:00
31e19fd874
gnu: emacs-lsp-mode: Update to 26c4d3e.
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* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:43 +02:00
7e9534150b
gnu: emacs-nov-el: Update to 0.4.0 and use gexps.
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* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0.
[arguments]: Use gexps.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:42 +02:00
df5a021f66
gnu: emacs-modus-themes: Update to 2.7.1.
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* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1.
2022-10-04 13:37:42 +02:00
5e8221822e
gnu: emacs-org-mime: Update to 0.3.2.
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* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2.
2022-10-04 13:37:42 +02:00
fd7c34f2bf
gnu: Add emacs-circadian.
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* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-10-04 13:37:41 +02:00
17134b9ec1
gnu: r-tximeta: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
2022-10-03 19:08:09 +02:00
94693d1980
gnu: r-bionero: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2.
[propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
2022-10-03 19:08:09 +02:00
202fd44ca0
gnu: r-biodb: Update to 1.4.2.
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* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
2022-10-03 19:08:09 +02:00
87c097631f
gnu: r-biocdockermanager: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
6bf59194a6
gnu: r-basilisk: Update to 1.8.1.
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* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
2022-10-03 19:08:09 +02:00
2e7872f6c9
gnu: r-bgeecall: Update to 1.12.2.
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* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
2022-10-03 19:08:09 +02:00
869b1f9f5c
gnu: r-pathview: Update to 1.36.1.
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* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
2022-10-03 19:08:09 +02:00
547d4670e7
gnu: r-delayedmatrixstats: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
2022-10-03 19:08:08 +02:00
cc719399c9
gnu: r-scran: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
1527d2e9df
gnu: r-scuttle: Update to 1.6.3.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
2022-10-03 19:08:08 +02:00
d66a466909
gnu: r-hdf5array: Update to 1.24.2.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
2022-10-03 19:08:08 +02:00
78ff15ae42
gnu: r-biocpkgtools: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
2022-10-03 19:08:08 +02:00
9af834ad37
gnu: r-biocviews: Update to 1.64.1.
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* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
2022-10-03 19:08:08 +02:00
8441c1f9ea
gnu: r-bioccheck: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
2022-10-03 19:08:08 +02:00
e30b2aeaa2
gnu: r-cytoml: Update to 2.8.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
2022-10-03 19:08:08 +02:00
10c006c21d
gnu: r-opencyto: Update to 2.8.4.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
2022-10-03 19:08:08 +02:00
bceed10243
gnu: r-flowstats: Update to 4.8.2.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
2022-10-03 19:08:08 +02:00
eed76ad91a
gnu: r-flowviz: Update to 1.60.2.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
2022-10-03 19:08:08 +02:00
f82d20caae
gnu: r-ggcyto: Update to 1.24.1.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03 19:08:08 +02:00
1c3750c9ea
gnu: r-ncdfflow: Update to 2.42.1.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03 19:08:08 +02:00
23e42e77d4
gnu: r-rsubread: Update to 2.10.5.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03 19:08:07 +02:00
597106f234
gnu: r-rgadem: Update to 2.44.1.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03 19:08:07 +02:00
83f0c1a39d
gnu: r-enrichplot: Update to 1.16.2.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03 19:08:07 +02:00
842431a036
gnu: r-dose: Update to 3.22.1.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03 19:08:07 +02:00
2b4a7fa22e
gnu: r-residualmatrix: Update to 1.6.1.
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* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
2022-10-03 19:08:07 +02:00
1cb30ba714
gnu: r-ggtree: Update to 3.4.4.
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* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
2022-10-03 19:08:07 +02:00
a047448aad
gnu: r-treeio: Update to 1.20.2.
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* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
2022-10-03 19:08:07 +02:00
41f029c12a
gnu: r-scaledmatrix: Update to 1.4.1.
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* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
2022-10-03 19:08:07 +02:00
e581479be8
gnu: r-diffbind: Update to 3.6.4.
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* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
2022-10-03 19:08:07 +02:00
309cfcedca
gnu: r-zellkonverter: Update to 1.6.5.
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* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
2022-10-03 19:08:07 +02:00
039d894b9d
gnu: r-limma: Update to 3.52.4.
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* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
2022-10-03 19:08:07 +02:00
a16c87fae1
gnu: r-genomicfeatures: Update to 1.48.4.
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* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
2022-10-03 19:08:06 +02:00
a15ad5ebe3
gnu: r-genomeinfodb: Update to 1.32.4.
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* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
2022-10-03 19:08:06 +02:00
ba6a3e7d39
gnu: r-gage: Update to 2.46.1.
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* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
2022-10-03 19:08:06 +02:00
c82320aa21
gnu: r-complexheatmap: Update to 2.12.1.
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* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
2022-10-03 19:08:06 +02:00
038eeeaf2a
gnu: r-chipseeker: Update to 1.32.1.
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* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1.
[propagated-inputs]: Add r-ggvenndiagram.
2022-10-03 19:08:06 +02:00
15243c2f84
gnu: r-biostrings: Update to 2.64.1.
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* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
2022-10-03 19:08:06 +02:00
29a947216c
gnu: r-annotationforge: Update to 1.38.1.
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* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
2022-10-03 19:08:06 +02:00
96b560ac8b
gnu: r-dearseq: Update to 1.8.4.
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* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
2022-10-03 19:08:03 +02:00
d573494387
doc: Mention sourcing system profile when chrooting.
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* doc/guix.texi (Chrooting into an existing system): Add sourcing of system
profile along user profile.
2022-10-03 11:22:19 -04:00
06201b76e5
gnu: Remove ocaml-craml.
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The package doesn't build from source and is unmaintained according to its
maintainer:
https://github.com/realworldocaml/craml/pull/8#issuecomment-529235628 .
* gnu/packages/ocaml.scm (ocaml-craml): Delete variable.
2022-10-03 11:16:15 -04:00
67e9513e40
gnu: r-spams: Update to 2.6.1.
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* gnu/packages/statistics.scm (r-spams): Update to 2.6.1.
[source]: Migrate from gforge.inria.fr to gitlab.inria.fr, fetching from git.
[phases]: Use gexps.
{patch-paths, mkdist}: New phases.
{no-mtune}: Delete trailing #t.
[native-inputs]: New field.
[home-page]: Update URL.
2022-10-03 11:16:15 -04:00
1390e38264
gnu: ocaml-dose3: Migrate from gforce.inria.fr.
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* gnu/packages/ocaml.scm (ocaml-dose3) [source]: Fetch from git from inill's gitlab
instance.
2022-10-03 11:16:15 -04:00
Andrew Tropin
Timotej Lazar
jgart
Michael Rohleder
Nicolas Goaziou
kiasoc5
Ricardo Wurmus
Maxim Cournoyer