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Author SHA1 Message Date
Ricardo Wurmus f592a0a4ee
gnu: r-biocfilecache: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 2a9f215cd1
gnu: r-arrmnormalization: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.34.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 5d77708905
gnu: r-progeny: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.16.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus ba9573b14e
gnu: r-rbowtie2: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.0.0.
[inputs]: Add samtools.
[propagated-inputs]: Add r-magrittr and r-rsamtools.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus efbe72addb
gnu: r-zfpkm: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.16.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus eb5f243f1b
gnu: r-zinbwave: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.16.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus d43703c41a
gnu: r-webbioc: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.66.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus b058ff1f75
gnu: r-widgettools: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.72.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus a4ab371edf
gnu: r-wiggleplotr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.18.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus 2704f4d596
gnu: r-wrench: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.12.0.
 2021-11-07 22:34:49 +00:00
Ricardo Wurmus e06acf2682
gnu: r-xcms: Update to 3.16.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.0.
[propagated-inputs]: Add r-msfeatures.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 482cec7a53
gnu: r-massspecwavelet: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 972e9f4224
gnu: r-roar: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.30.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus b00d8a1e74
gnu: r-yarn: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.20.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 13d51fe643
gnu: r-quantro: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.28.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 7fc5084e00
gnu: r-gcrma: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.66.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 240e1f0598
gnu: r-yapsa: Update to 1.19.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.19.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 2b769d0981
gnu: r-somaticsignatures: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.30.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus cb48316936
gnu: r-gtrellis: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.26.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 6a4b381268
gnu: r-yamss: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.20.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 4c18a6b644
gnu: r-ebimage: Update to 4.36.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.36.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus a69776dcb5
gnu: r-aucell: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.16.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 7b6e7ac7bf
gnu: r-allelicimbalance: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.32.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus 776c53a967
gnu: r-annotationtools: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.68.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus e79f4779ce
gnu: r-abaenrichment: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.24.0.
 2021-11-07 22:34:48 +00:00
Ricardo Wurmus b7057dbac6
gnu: r-gofuncr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.14.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 46de5a7503
gnu: r-atacseqqc: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 2ba1756960
gnu: r-genomicscores: Update to 2.6.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 0b8b2b63a2
gnu: r-motifstack: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.38.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 9a27f82d03
gnu: r-motifbreakr: Update to 2.8.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.8.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus a906e93378
gnu: r-motifdb: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.36.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 38ca6643c4
gnu: r-rgadem: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 4f6f03fd6e
gnu: r-bacon: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.22.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 6b27532fea
gnu: r-abseqr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.12.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 172cddcbec
gnu: r-a4: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus c0207d4f7c
gnu: r-a4base: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 9b249fc8a9
gnu: r-a4reporting: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 0b06e8ee13
gnu: r-a4preproc: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus c179aae47e
gnu: r-a4classif: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.42.0.
 2021-11-07 22:34:47 +00:00
Ricardo Wurmus 5785c45e01
gnu: r-a4core: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.42.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 85c2a802f9
gnu: r-annaffy: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.66.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 58c2b7978f
gnu: r-mlinterfaces: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.74.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus b4127b3490
gnu: r-clusterexperiment: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.14.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 2e9821cd11
gnu: r-clusterprofiler: Update to 4.2.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 498f45bcad
gnu: r-enrichplot: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.1.
[propagated-inputs]: Remove r-cowplot; add r-aplot and r-yulab-utils.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 9b6dee4c0d
gnu: r-dose: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 6dbc856518
gnu: r-fgsea: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus bca9a6b4c1
gnu: r-fcscan: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.8.0.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 7ac356d337
gnu: r-sigpathway: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.62.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus bc406e02bb
gnu: r-anota: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.42.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 46c97a358f
gnu: r-gosemsim: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.20.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 75f1085c2f
gnu: r-heatplus: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.2.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus a2b346ab13
gnu: r-varianttools: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.36.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 07e49dac6f
gnu: r-tradeseq: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.8.0.
[propagated-inputs]: Remove r-monocle; add r-mass and r-trajectoryutils.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 06c89769c6
gnu: r-ioniser: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.18.0.
 2021-11-07 22:34:46 +00:00
Ricardo Wurmus 327371f61f
gnu: r-linnorm: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.18.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus f151723cb6
gnu: r-lumi: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.46.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus d9c9ec4396
gnu: r-methylumi: Update to 2.40.1. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.40.1.
[propagated-inputs]: Add r-genomicfeatures.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 74ea385c8a
gnu: r-minfi: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.40.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 56f8449df1
gnu: r-bumphunter: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.36.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 328050f083
gnu: r-siggenes: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.68.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus dc7a2b3b96
gnu: r-illuminaio: Update to 0.36.0. 
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.36.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus c14e90b2e0
gnu: r-geoquery: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.0.
[propagated-inputs]: Add r-data-table.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus cf5a3022c9
gnu: r-scone: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scone): Update to 1.18.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus d06be34abd
gnu: r-scdd: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.18.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus b5235660c8
gnu: r-noiseq: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.38.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 2b78b19ed8
gnu: r-monocle: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.22.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus aa5a9e5d63
gnu: r-mast: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-mast): Update to 1.20.0.
 2021-11-07 22:34:45 +00:00
Ricardo Wurmus 78018d3c5c
gnu: r-batchelor: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.10.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 2953aac54a
gnu: r-residualmatrix: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.4.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 25dc8fb984
gnu: r-icobra: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 3835d77db3
gnu: r-ihw: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.22.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus b5e67f5747
gnu: r-lpsymphony: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.22.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 2b0a656fd7
gnu: r-karyoploter: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus d9b6a42297
gnu: r-ebseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-ebseq): Update to 1.34.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus e639d03112
gnu: r-dnacopy: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.68.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus efb1b28f32
gnu: r-copynumber: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-copynumber): Update to 1.34.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 7c4992115c
gnu: r-chipexoqual: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-chipexoqual): Update to 1.18.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 5c53d21450
gnu: r-savr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-savr): Update to 1.32.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 8c6a0221fb
gnu: r-biocsingular: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.10.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus fae42c164b
gnu: r-metapod: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-metapod): Update to 1.2.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 9a79db434a
gnu: r-ggtree: Update to 3.2.0. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus eb7a7bacbc
gnu: r-treeio: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.0.
 2021-11-07 22:34:44 +00:00
Ricardo Wurmus 496260ddf1
gnu: r-scaledmatrix: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.2.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 651d54ef51
gnu: r-biocneighbors: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.12.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 7ec0b978de
gnu: r-ruvseq: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.28.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 6f2ef7761a
gnu: r-dnabarcodes: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus fff0fe2ec9
gnu: r-inspect: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 92f690c1b0
gnu: r-plgem: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.66.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus e5cd10e99d
gnu: r-rots: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.22.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 9050a5c7f6
gnu: r-glimma: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.4.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 6ad43d2d78
gnu: r-goseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.46.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus e9feedb902
gnu: r-ctc: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.68.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 6371513fd0
gnu: r-genomicinteractions: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.28.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 3dac6963f9
gnu: r-interactionset: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.22.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 56da30065a
gnu: r-riboseqr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.28.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 765052f5dc
gnu: r-riboprofiling: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus 4f094515b0
gnu: r-chipcomp: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.24.0.
 2021-11-07 22:34:43 +00:00
Ricardo Wurmus f1cc328101
gnu: r-bayseq: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.28.0.
 2021-11-07 22:34:42 +00:00
Ricardo Wurmus 29bfd56aa0
gnu: r-qdnaseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.30.0.
[propagated-inputs]: Remove r-future.
 2021-11-07 22:34:42 +00:00