6e75790fc0
import/cran: Fix Bioconductor updater.
...
* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION
instead of VERSION, which is always #F.
2023-01-09 22:32:58 +01:00
387c486591
gnu: r-fpc: Update to 2.2-10.
...
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-10.
2023-01-09 22:30:51 +01:00
bd0da7c791
gnu: r-statmod: Update to 1.5.0.
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* gnu/packages/statistics.scm (r-statmod): Update to 1.5.0.
2023-01-09 22:30:51 +01:00
1e3990d313
gnu: r-sendmailr: Update to 1.3-2.
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* gnu/packages/statistics.scm (r-sendmailr): Update to 1.3-2.
2023-01-09 22:30:51 +01:00
8c33135953
gnu: r-bien: Update to 1.2.6.
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* gnu/packages/cran.scm (r-bien): Update to 1.2.6.
[propagated-inputs]: Remove r-rgdal, r-rgeos, and r-sp; add r-terra.
2023-01-09 22:30:51 +01:00
5aacc2bd98
gnu: r-rtweet: Update to 1.1.0.
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* gnu/packages/cran.scm (r-rtweet): Update to 1.1.0.
[propagated-inputs]: Add r-httr2.
2023-01-09 22:30:51 +01:00
fa0dc85d40
gnu: r-mlr3learners: Update to 0.5.6.
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* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.6.
2023-01-09 22:30:51 +01:00
302f55fd9d
gnu: r-qtl: Update to 1.58.
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* gnu/packages/cran.scm (r-qtl): Update to 1.58.
2023-01-09 22:30:51 +01:00
848c318aa0
gnu: r-tidytext: Update to 0.4.1.
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* gnu/packages/cran.scm (r-tidytext): Update to 0.4.1.
2023-01-09 22:30:51 +01:00
63921834e9
gnu: r-forecast: Update to 8.20.
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* gnu/packages/cran.scm (r-forecast): Update to 8.20.
2023-01-09 22:30:51 +01:00
20e6139df3
gnu: r-qqconf: Update to 1.3.1.
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* gnu/packages/cran.scm (r-qqconf): Update to 1.3.1.
2023-01-09 22:30:50 +01:00
dcf8c29277
gnu: r-gkmsvm: Update to 0.82.0.
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* gnu/packages/cran.scm (r-gkmsvm): Update to 0.82.0.
2023-01-09 22:30:50 +01:00
a2c77eec88
gnu: r-lavaan: Update to 0.6-13.
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* gnu/packages/cran.scm (r-lavaan): Update to 0.6-13.
2023-01-09 22:30:50 +01:00
8b7de31e7a
gnu: r-rncl: Update to 0.8.7.
...
* gnu/packages/cran.scm (r-rncl): Update to 0.8.7.
2023-01-09 22:30:50 +01:00
b24219443d
gnu: r-fmsb: Update to 0.7.5.
...
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.5.
2023-01-09 22:30:50 +01:00
4e69d047c8
gnu: r-rgl: Update to 0.111.6.
...
* gnu/packages/cran.scm (r-rgl): Update to 0.111.6.
2023-01-09 22:30:50 +01:00
4f9b35d55c
gnu: r-ncdf4: Update to 1.21.
...
* gnu/packages/cran.scm (r-ncdf4): Update to 1.21.
2023-01-09 22:30:50 +01:00
1ce7003fb1
gnu: r-afex: Update to 1.2-1.
...
* gnu/packages/cran.scm (r-afex): Update to 1.2-1.
2023-01-09 22:30:50 +01:00
c63bbd4348
gnu: r-raster: Update to 3.6-13.
...
* gnu/packages/cran.scm (r-raster): Update to 3.6-13.
2023-01-09 22:30:50 +01:00
fd82a783eb
gnu: r-drtmle: Update to 1.1.2.
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* gnu/packages/cran.scm (r-drtmle): Update to 1.1.2.
2023-01-09 22:30:50 +01:00
8b322c5967
gnu: r-netrep: Update to 1.2.6.
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* gnu/packages/cran.scm (r-netrep): Update to 1.2.6.
2023-01-09 22:30:49 +01:00
8d696f2728
gnu: r-precrec: Update to 0.14.1.
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* gnu/packages/cran.scm (r-precrec): Update to 0.14.1.
[propagated-inputs]: Add r-rlang.
2023-01-09 22:30:49 +01:00
fa9f02dc9f
gnu: r-writexl: Update to 1.4.2.
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* gnu/packages/cran.scm (r-writexl): Update to 1.4.2.
2023-01-09 22:30:49 +01:00
c7d61d2077
gnu: r-officer: Update to 0.5.1.
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* gnu/packages/cran.scm (r-officer): Update to 0.5.1.
[propagated-inputs]: Add r-openssl.
2023-01-09 22:30:49 +01:00
18ea1e2085
gnu: r-billboarder: Update to 0.4.0.
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* gnu/packages/cran.scm (r-billboarder): Update to 0.4.0.
[native-inputs]: Update js-billboard to 3.6.3.
2023-01-09 22:30:49 +01:00
3090a07f90
gnu: r-reticulate: Update to 1.27.
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* gnu/packages/cran.scm (r-reticulate): Update to 1.27.
2023-01-09 22:30:49 +01:00
0943ee5c9c
gnu: r-rastervis: Update to 0.51.5.
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* gnu/packages/cran.scm (r-rastervis): Update to 0.51.5.
2023-01-09 22:30:49 +01:00
e758675070
gnu: r-heatmaply: Update to 1.4.2.
...
* gnu/packages/cran.scm (r-heatmaply): Update to 1.4.2.
2023-01-09 22:30:49 +01:00
407f58a9ad
gnu: r-expm: Update to 0.999-7.
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* gnu/packages/cran.scm (r-expm): Update to 0.999-7.
2023-01-09 22:30:49 +01:00
a161409264
gnu: r-zlog: Update to 1.0.2.
...
* gnu/packages/cran.scm (r-zlog): Update to 1.0.2.
2023-01-09 22:30:49 +01:00
f05c1a46ff
gnu: r-seriation: Update to 1.4.1.
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* gnu/packages/cran.scm (r-seriation): Update to 1.4.1.
2023-01-09 22:30:48 +01:00
77895d9d6b
gnu: r-mitml: Update to 0.4-4.
...
* gnu/packages/cran.scm (r-mitml): Update to 0.4-4.
2023-01-09 22:30:48 +01:00
ba4117bf61
gnu: r-timedate: Update to 4022.108.
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* gnu/packages/cran.scm (r-timedate): Update to 4022.108.
2023-01-09 22:30:48 +01:00
8c83db6a38
gnu: r-lava: Update to 1.7.1.
...
* gnu/packages/cran.scm (r-lava): Update to 1.7.1.
2023-01-09 22:30:48 +01:00
47184a91f1
gnu: r-rstpm2: Update to 1.5.9.
...
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.9.
2023-01-09 22:30:48 +01:00
15b612a328
gnu: r-htmlwidgets: Update to 1.6.1.
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* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.1.
2023-01-09 22:30:48 +01:00
b147c4a7f3
gnu: r-collections: Update to 0.3.7.
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* gnu/packages/cran.scm (r-collections): Update to 0.3.7.
2023-01-09 22:30:48 +01:00
b688e283dc
gnu: Add r-httr2.
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* gnu/packages/cran.scm (r-httr2): New variable.
2023-01-09 22:30:42 +01:00
f62ac25ca3
news: Add 'de' translation.
...
* etc/news.scm: Add German translation of entry about
linux-libre 4.9 removal.
2023-01-09 18:48:12 +01:00
84f117f495
gnu: LLVM, Clang, libomp, lld: Update to 15.0.6.
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* gnu/packages/llvm.scm (llvm-15, clang-15, libomp-15, lld-15):
Update to 15.0.6.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-09 17:40:54 +01:00
735e915bbd
gnu: Add minetest-mobs-monster.
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* gnu/packages/minetest.scm (minetest-mobs-monster): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-09 17:40:54 +01:00
e8b90b1d5d
gnu: Add minetest-wielded-light.
...
* gnu/packages/minetest.scm (minetest-wielded-light): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-09 17:40:54 +01:00
6c343d0d0f
read-print: Do not use extended notation when printing '1+', '1-', etc.
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* guix/read-print.scm (%special-non-extended-symbols): New variable.
(symbol->display-string): New procedure.
(pretty-print-with-comments): Use it in lieu of 'string->symbol'.
* tests/read-print.scm: Add test.
2023-01-09 17:40:54 +01:00
407175a1d0
daemon: Improve error message for wrong hash sizes.
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* nix/libutil/hash.cc (parseHash): Show the hash algorithm name and
expected size in the error message.
* tests/derivations.scm ("fixed-output derivation, invalid hash size"):
New test.
2023-01-09 17:40:54 +01:00
5d24e57a61
derivations: 'read-derivation' correctly handles case with empty hash.
...
Reported by Stephen Paul Weber <singpolyma@singpolyma.net> at
<https://lists.gnu.org/archive/html/guix-devel/2023-01/msg00035.html >.
* guix/derivations.scm (read-derivation)[outputs->alist]: Treat the
empty hash case as non-fixed-output whether or not the hash algorithm is
the empty string, and preserve the hash algorithm in <derivation-output>.
* tests/derivations.scm ("'download' built-in builder, no fixed-output hash")
("fixed-output-derivation?, no hash", "read-derivation with hash = #f"): New tests.
2023-01-09 17:40:53 +01:00
007e697560
substitute: Parse '_NIX_OPTIONS' once.
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* guix/scripts/substitute.scm (find-daemon-option): Arrange to call
'daemon-options' only once.
2023-01-09 17:40:53 +01:00
47c1de22df
doc: cookbook: Add "Installing Guix on a Cluster" chapter.
...
This is derived from the article at
<https://hpc.guix.info/blog/2017/11/installing-guix-on-a-cluster/ >, with
clarifications and updates.
* doc/guix-cookbook.texi (Installing Guix on a Cluster): New chapter.
2023-01-09 17:40:53 +01:00
8b314efd50
services: base: Add environment support to guix-configuration.
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* gnu/services/base.scm (<guix-configuration>)[extra-env]: New field.
(guix-shepherd-service): Honor it.
* doc/guix.texi (Base Services): Document it.
2023-01-09 17:15:28 +01:00
de48bcee07
gnu: Add r-gg3d.
...
* gnu/packages/bioinformatics.scm (r-gg3d): New variable.
2023-01-09 14:50:26 +01:00
35ecbb418c
home: environment-variables: Fix escaping.
...
* gnu/home/services.scm (environment-variable-shell-definitions): Fix
escaping.
* tests/guix-home.sh: Add STRING_WITH_ESCAPES environment variable and test
its value.
Reported-by: elevnkb
2023-01-09 12:22:56 +04:00
Ricardo Wurmus
Florian Pelz
Greg Hogan
Vivien Kraus
Ludovic Courtès
Ludovic Courtès
Mathieu Othacehe
Andrew Tropin